Pub Date : 2025-02-25eCollection Date: 2025-01-01DOI: 10.62347/LNKO2367
Tong Zhou, Yanqiu Zhang, Jun Cao, Qingqin Tang, Yuting Liang, Sheng Zhang, Mengyuan Hu, Bin Feng, Jieyu Jin
Background: Breast cancer is one of the most common cancers in women with high morbidity and mortality. ZNF480, a member of the KRAB-ZNFs family, correlates with cancer progression. However, its role in the development and progression of breast cancer remains unclear.
Methods: We utilized transcriptomic and clinical data from The Cancer Genome Atlas (TCGA) and Genotype Tissue Expression (GTEx) databases of breast cancer patients to investigate the potential pro-cancer role of ZNF480, including differential expression of ZNF480 in breast cancer, prognostic value, clinicopathological features, immune cell infiltration relevance and function enrichment analysis.
Results: Our results indicate that ZNF480 is upregulated in breast cancer and is correlations with survival, clinical stage, race and tumor subtype in breast cancer patients. Additionally, immune infiltration analysis revealed significant negative correlations between ZNF480 expression and multiple tumor infiltrating immune cells, including aDC, B cells, CD8 T cells, Cytotoxic cells, DC, iDC, Macrophages, Neutrophils, NK CD56bright cells, NK CD56dim cells, NK cells, pDC, T cells, Tem, TFH and Th1 cells, whereas a significant positive correlation was observed with the infiltration of T helper cells, Tcm, Tgd and Th2 cells. Furthermore, functional enrichment analysis indicated that ZNF480 may be involved in Angiogenesis, Allograft rejection, TNFα signaling via NFκB, Coagulation, IL6 Jak STAT3 signaling, Inflammatory response, Interferon gamma response and other processes.
Conclusion: ZNF480 is highly expressed in breast cancer and correlates with immune cell infiltration, and may be a candidate prognostic biomarker, which may assist in breast cancer treatment.
背景:乳腺癌是女性最常见的癌症之一,发病率和死亡率都很高。ZNF480是KRAB-ZNFs家族的一员,与癌症进展相关。然而,它在乳腺癌发生和发展中的作用仍不清楚。方法:利用癌症基因组图谱(TCGA)和乳腺癌患者基因型组织表达(GTEx)数据库的转录组学和临床数据,研究ZNF480在乳腺癌中的差异表达、预后价值、临床病理特征、免疫细胞浸润相关性和功能富集分析等潜在的促癌作用。结果:ZNF480在乳腺癌中表达上调,并与乳腺癌患者的生存、临床分期、种族和肿瘤亚型相关。免疫浸润分析显示,ZNF480表达与多种肿瘤浸润免疫细胞(aDC、B细胞、CD8 T细胞、细胞毒细胞、DC、iDC、巨噬细胞、中性粒细胞、NK CD56bright细胞、NK CD56dim细胞、pDC细胞、T细胞、Tem、TFH和Th1细胞)呈显著负相关,与T辅助细胞、Tcm、Tgd和Th2细胞的浸润呈显著正相关。此外,功能富集分析表明,ZNF480可能参与血管生成、异体移植排斥、TNFα通过NFκB信号传导、凝血、IL6 Jak STAT3信号传导、炎症反应、干扰素γ反应等过程。结论:ZNF480在乳腺癌中高表达,与免疫细胞浸润相关,可能是一种候选的预后生物标志物,可能有助于乳腺癌的治疗。
{"title":"Identification of immune infiltration-related ZNF480 for predicting prognosis in breast cancer.","authors":"Tong Zhou, Yanqiu Zhang, Jun Cao, Qingqin Tang, Yuting Liang, Sheng Zhang, Mengyuan Hu, Bin Feng, Jieyu Jin","doi":"10.62347/LNKO2367","DOIUrl":"10.62347/LNKO2367","url":null,"abstract":"<p><strong>Background: </strong>Breast cancer is one of the most common cancers in women with high morbidity and mortality. ZNF480, a member of the KRAB-ZNFs family, correlates with cancer progression. However, its role in the development and progression of breast cancer remains unclear.</p><p><strong>Methods: </strong>We utilized transcriptomic and clinical data from The Cancer Genome Atlas (TCGA) and Genotype Tissue Expression (GTEx) databases of breast cancer patients to investigate the potential pro-cancer role of ZNF480, including differential expression of ZNF480 in breast cancer, prognostic value, clinicopathological features, immune cell infiltration relevance and function enrichment analysis.</p><p><strong>Results: </strong>Our results indicate that ZNF480 is upregulated in breast cancer and is correlations with survival, clinical stage, race and tumor subtype in breast cancer patients. Additionally, immune infiltration analysis revealed significant negative correlations between ZNF480 expression and multiple tumor infiltrating immune cells, including aDC, B cells, CD8 T cells, Cytotoxic cells, DC, iDC, Macrophages, Neutrophils, NK CD56bright cells, NK CD56dim cells, NK cells, pDC, T cells, Tem, TFH and Th1 cells, whereas a significant positive correlation was observed with the infiltration of T helper cells, Tcm, Tgd and Th2 cells. Furthermore, functional enrichment analysis indicated that ZNF480 may be involved in Angiogenesis, Allograft rejection, TNFα signaling via NFκB, Coagulation, IL6 Jak STAT3 signaling, Inflammatory response, Interferon gamma response and other processes.</p><p><strong>Conclusion: </strong>ZNF480 is highly expressed in breast cancer and correlates with immune cell infiltration, and may be a candidate prognostic biomarker, which may assist in breast cancer treatment.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"14 1","pages":"1-13"},"PeriodicalIF":1.4,"publicationDate":"2025-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11932063/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143712313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-25eCollection Date: 2025-01-01DOI: 10.62347/XVFP6530
Qingqin Tang, Yanqiu Zhang, Yuting Liang, Jun Qiu, Sheng Zhang, Jieyu Jin, Jun Cao, Longwei Qiao, Bin Feng
Background: Esophageal carcinoma (ESCA) is deemed a highly lethal malignancy with a grim prognosis and stands as the fourth leading cause of cancer-related mortality. Recent research has revealed the potential crucial role of fragile X mental retardation 1 (FMR1) protein in tumor development and progression. However, the correlation between FMR1 and immune regulation in ESCA remains unclear. In this study, we aimed to assess the clinicopathological and prognostic significance of FMR1 expression, and its relationship with immune cell infiltration, immune biomarkers and the pathway involved in ESCA.
Methods: The Cancer Genome Atlas (TCGA) pan-cancer data and the Gene Expression Omnibus (GEO) database were used to analyze the expression of FMR1. The correlation between FMR1 and cancer stage, time-dependent survival curve and receiver operating characteristic (ROC) curve were performed using R package. Immune cell infiltration was assessed using the samples found in TCGA. Functional enrichment analyses were performed to investigate the potential signaling pathway and biological functions.
Results: FMR1 was upregulated in 7 tumors and downregulated in 4 tumors. Overexpression of FMR1 considerably associated with cancer stage and poor prognosis in ESCA. The ROC area was 0.745 and 0.830 for 3-year and 5-year respectively. FMR1 exhibited a positive correlation with common lymphoid progenitor and T cell CD4+ Th2, and a negative correlation with B cell memory, B cell plasma, endothelial cell, monocyte, neutrophil, T cell CD4+ Th1, and T cell CD4+ effector memory in ESCA. The enrichment analysis revealed FMR1 was primarily associated with cell development and predominantly enriched in immune-related pathways.
Conclusion: FMR1 may act as a prognostic biomarker for ESCA and participate in immune regulation in ESCA.
背景:食管癌(ESCA)被认为是一种预后恶劣的高致死性恶性肿瘤,是癌症相关死亡的第四大原因。最近的研究揭示了脆性X智力迟钝1 (FMR1)蛋白在肿瘤发生和发展中的潜在关键作用。然而,FMR1与ESCA免疫调节之间的相关性尚不清楚。在本研究中,我们旨在评估FMR1表达的临床病理和预后意义,及其与免疫细胞浸润、免疫生物标志物和ESCA参与途径的关系。方法:采用Cancer Genome Atlas (TCGA)泛癌数据和Gene Expression Omnibus (GEO)数据库分析FMR1的表达。采用R包进行FMR1与肿瘤分期、时间依赖生存曲线、受试者工作特征(ROC)曲线的相关性分析。利用TCGA中发现的样本评估免疫细胞浸润。通过功能富集分析研究其潜在的信号通路和生物学功能。结果:FMR1在7例肿瘤中表达上调,在4例肿瘤中表达下调。FMR1的过表达与ESCA的癌症分期和不良预后显著相关。3年和5年的ROC面积分别为0.745和0.830。在ESCA中,FMR1与普通淋巴样祖细胞和T细胞CD4+ Th2呈正相关,与B细胞记忆、B细胞浆、内皮细胞、单核细胞、中性粒细胞、T细胞CD4+ Th1和T细胞CD4+效应记忆呈负相关。富集分析显示FMR1主要与细胞发育相关,主要富集于免疫相关途径。结论:FMR1可能作为ESCA的预后生物标志物,参与ESCA的免疫调节。
{"title":"The prognostic significance of FMR1 expression and its immunomodulatory implications in esophageal carcinoma.","authors":"Qingqin Tang, Yanqiu Zhang, Yuting Liang, Jun Qiu, Sheng Zhang, Jieyu Jin, Jun Cao, Longwei Qiao, Bin Feng","doi":"10.62347/XVFP6530","DOIUrl":"10.62347/XVFP6530","url":null,"abstract":"<p><strong>Background: </strong>Esophageal carcinoma (ESCA) is deemed a highly lethal malignancy with a grim prognosis and stands as the fourth leading cause of cancer-related mortality. Recent research has revealed the potential crucial role of fragile X mental retardation 1 (FMR1) protein in tumor development and progression. However, the correlation between FMR1 and immune regulation in ESCA remains unclear. In this study, we aimed to assess the clinicopathological and prognostic significance of FMR1 expression, and its relationship with immune cell infiltration, immune biomarkers and the pathway involved in ESCA.</p><p><strong>Methods: </strong>The Cancer Genome Atlas (TCGA) pan-cancer data and the Gene Expression Omnibus (GEO) database were used to analyze the expression of FMR1. The correlation between FMR1 and cancer stage, time-dependent survival curve and receiver operating characteristic (ROC) curve were performed using R package. Immune cell infiltration was assessed using the samples found in TCGA. Functional enrichment analyses were performed to investigate the potential signaling pathway and biological functions.</p><p><strong>Results: </strong>FMR1 was upregulated in 7 tumors and downregulated in 4 tumors. Overexpression of FMR1 considerably associated with cancer stage and poor prognosis in ESCA. The ROC area was 0.745 and 0.830 for 3-year and 5-year respectively. FMR1 exhibited a positive correlation with common lymphoid progenitor and T cell CD4+ Th2, and a negative correlation with B cell memory, B cell plasma, endothelial cell, monocyte, neutrophil, T cell CD4+ Th1, and T cell CD4+ effector memory in ESCA. The enrichment analysis revealed FMR1 was primarily associated with cell development and predominantly enriched in immune-related pathways.</p><p><strong>Conclusion: </strong>FMR1 may act as a prognostic biomarker for ESCA and participate in immune regulation in ESCA.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"14 1","pages":"14-22"},"PeriodicalIF":1.4,"publicationDate":"2025-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11932061/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143712328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-25eCollection Date: 2024-01-01DOI: 10.62347/FNLX9490
Abdullah Nasser AlShahrani, Thamir Al-Khlaiwi, Sultan Ayoub Meo, Intisar Ahmad Siddiqui, Bandar Alghanem, Feras Almourfi
Endocannabinoids (eCBs) play a crucial role in regulating the pathophysiological progression of chronic liver disease through hepatic cannabinoid receptor 2 (CB2). According to the literature, various treatment options are available for liver disease patients, including transplantation and physical activity both before and after the procedure. The aim of this study is to assess the response of endocannabinoids to pre- and post-therapeutic exercises in liver transplant patients (LTx). This analytical case-control longitudinal study was conducted on patients aged 18-70 at King Fahad Specialist Hospital in Dammam, Saudi Arabia. Participants were divided into two groups: an intervention group of LTx patients (n = 26) and a control group of end-stage liver disease patients (n = 23) who were not candidates for liver transplantation (LT). Blood samples were collected before the initiation of preoperative exercises, one month before LT, and three months after LT following postoperative exercises. The median arachidonoyl ethanolamide (AEA) levels in the control group were comparatively higher after therapeutic exercises compared to before; however, the Wilcoxon signed-rank test showed no significant differences (P = 0.212). In the LTx group, the median difference in AEA between pre- and post-therapeutic exercises was marginally significant (P = 0.091). Additionally, the Wilcoxon signed-rank test revealed a highly significant increase in median 2-arachidonoylglycerol (2-AG) levels after therapeutic exercises compared to before in the LTx group (P = 0.049), while the control group showed no significant change in post- vs. pre-therapeutic exercise median 2-AG levels (P = 0.346). The study's findings revealed an increased concentration of 2-AG after therapeutic exercises in LTx patients but not in the control group, while AEA levels were elevated after therapeutic exercises in both groups. The effect of post-therapeutic exercises on hematological and biochemical markers was significant between the control and LTx groups, particularly concerning platelet count, total bilirubin, total protein, albumin/globulin ratio, international normalized ratio, and calcium levels.
{"title":"Endocannabinoid and hematological responses to pre- and post-therapeutic exercises in liver transplant patients.","authors":"Abdullah Nasser AlShahrani, Thamir Al-Khlaiwi, Sultan Ayoub Meo, Intisar Ahmad Siddiqui, Bandar Alghanem, Feras Almourfi","doi":"10.62347/FNLX9490","DOIUrl":"10.62347/FNLX9490","url":null,"abstract":"<p><p>Endocannabinoids (eCBs) play a crucial role in regulating the pathophysiological progression of chronic liver disease through hepatic cannabinoid receptor 2 (CB2). According to the literature, various treatment options are available for liver disease patients, including transplantation and physical activity both before and after the procedure. The aim of this study is to assess the response of endocannabinoids to pre- and post-therapeutic exercises in liver transplant patients (LTx). This analytical case-control longitudinal study was conducted on patients aged 18-70 at King Fahad Specialist Hospital in Dammam, Saudi Arabia. Participants were divided into two groups: an intervention group of LTx patients (n = 26) and a control group of end-stage liver disease patients (n = 23) who were not candidates for liver transplantation (LT). Blood samples were collected before the initiation of preoperative exercises, one month before LT, and three months after LT following postoperative exercises. The median arachidonoyl ethanolamide (AEA) levels in the control group were comparatively higher after therapeutic exercises compared to before; however, the Wilcoxon signed-rank test showed no significant differences (P = 0.212). In the LTx group, the median difference in AEA between pre- and post-therapeutic exercises was marginally significant (P = 0.091). Additionally, the Wilcoxon signed-rank test revealed a highly significant increase in median 2-arachidonoylglycerol (2-AG) levels after therapeutic exercises compared to before in the LTx group (P = 0.049), while the control group showed no significant change in post- vs. pre-therapeutic exercise median 2-AG levels (P = 0.346). The study's findings revealed an increased concentration of 2-AG after therapeutic exercises in LTx patients but not in the control group, while AEA levels were elevated after therapeutic exercises in both groups. The effect of post-therapeutic exercises on hematological and biochemical markers was significant between the control and LTx groups, particularly concerning platelet count, total bilirubin, total protein, albumin/globulin ratio, international normalized ratio, and calcium levels.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 6","pages":"259-271"},"PeriodicalIF":1.4,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11744344/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017194","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-25eCollection Date: 2024-01-01DOI: 10.62347/BUIX3741
Yutong Lu, Wenhui Xue, Renxin Ji
Objective: This experiment aims to explore how foam rollers of different Shore hardness affect DOMS, providing insights for sports therapy.
Methods: Forty participants from Shanghai Sanda University who have no habit of strength training, no lower limb injury, and meet the health standards were selected to conduct three experiments under the conditions of no intervention, using a 50 Shore hardness foam roller, and using a 60 Shore hardness foam roller, respectively. Data were recorded before and after modeling, as well as 24, 48, and 72 hours later.
Results: There were no significant differences in various indicators among the three groups of subjects before and immediately after DOMS modeling (P>0.05). Following intervention, the 60 Shore hardness foam roller significantly reduced DOMS pain (NRS score) compared to the 50 Shore hardness roller, improved knee flexion range of motion, and increased standing long jump distance (P<0.05).
Conclusions: The 60 Shore hardness foam roller is superior to the 50 Shore hardness foam roller in alleviating DOMS, improving joint range of motion, and enhancing athletic performance.
{"title":"Observation on the therapeutic effect of rolling the target muscle groups of lower limbs with foam rollers of different shore hardness on DOMS.","authors":"Yutong Lu, Wenhui Xue, Renxin Ji","doi":"10.62347/BUIX3741","DOIUrl":"10.62347/BUIX3741","url":null,"abstract":"<p><strong>Objective: </strong>This experiment aims to explore how foam rollers of different Shore hardness affect DOMS, providing insights for sports therapy.</p><p><strong>Methods: </strong>Forty participants from Shanghai Sanda University who have no habit of strength training, no lower limb injury, and meet the health standards were selected to conduct three experiments under the conditions of no intervention, using a 50 Shore hardness foam roller, and using a 60 Shore hardness foam roller, respectively. Data were recorded before and after modeling, as well as 24, 48, and 72 hours later.</p><p><strong>Results: </strong>There were no significant differences in various indicators among the three groups of subjects before and immediately after DOMS modeling (<i>P</i>>0.05). Following intervention, the 60 Shore hardness foam roller significantly reduced DOMS pain (NRS score) compared to the 50 Shore hardness roller, improved knee flexion range of motion, and increased standing long jump distance (<i>P</i><0.05).</p><p><strong>Conclusions: </strong>The 60 Shore hardness foam roller is superior to the 50 Shore hardness foam roller in alleviating DOMS, improving joint range of motion, and enhancing athletic performance.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 6","pages":"272-277"},"PeriodicalIF":1.4,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11744345/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-25eCollection Date: 2024-01-01DOI: 10.62347/GRYY2849
Maya Vladova Gulubova, Stefan P Valkanov, Maria Magdalena K Ignatova, Georgi A Minkov
Tertiary lymphoid structures (TLS), formerly recognized as Crohn's-like structures, serve as crucial biomarkers for evaluating the progression of colorectal cancer (CRC). Understanding their spatial distribution, cellular composition, and interactions within CRC is paramount for comprehending the immune response in the tumor microenvironment (TME). TLS are comprised of a T-cellular compartment and a B-cellular compartment, the latter encompassing follicular dendritic cells (FDCs), high endothelial venules (HEVs), and lymphatic vessels. While T helper cells predominate in cancer TLS, the specific functions of their subpopulations remain inadequately understood. Notably, T follicular helper (Tfh) cells play a central role in the activation of CD8+ T cells, and both Tfh cells and Tfh-associated genes have been linked to enhanced CRC survival. In stage II CRC TLS, an escalation in the number of FoxP3+ T regulatory cells (Tregs) is regarded as a negative prognostic factor. Moreover, within TLS, T lymphocytes shield B lymphocytes from the immunosuppressive effects of the TME. B lymphocyte activation is succeeded by class recombination (CSR) and somatic hypermutation (SHM). Dendritic cells (DCs) constitute a vital cellular component of the TLS T compartment. During steady state and early stages of CRC, specialized antigen-presenting cells such as DCs migrate to regional lymph nodes through afferent lymphatics. They deliver MHC antigen-derived peptide complexes (tumor antigens) to naïve CD4+ and CD8+ T cells, which subsequently infiltrate the tumor site as antigen-specific T cells. Key DC markers studied in TLS include CD83 and DC-LAMP. Research has indicated that the DC-LAMP gene signature in tumor TLS reflects Th1 cell targeting, cytotoxicity, and T cell activation. This review comprehensively outlines the functions performed by distinct cell subsets within tertiary lymphoid structures (TLS) in tumors.
{"title":"Tertiary lymphoid structures in colorectal cancer - organization and immune cell interactions.","authors":"Maya Vladova Gulubova, Stefan P Valkanov, Maria Magdalena K Ignatova, Georgi A Minkov","doi":"10.62347/GRYY2849","DOIUrl":"10.62347/GRYY2849","url":null,"abstract":"<p><p>Tertiary lymphoid structures (TLS), formerly recognized as Crohn's-like structures, serve as crucial biomarkers for evaluating the progression of colorectal cancer (CRC). Understanding their spatial distribution, cellular composition, and interactions within CRC is paramount for comprehending the immune response in the tumor microenvironment (TME). TLS are comprised of a T-cellular compartment and a B-cellular compartment, the latter encompassing follicular dendritic cells (FDCs), high endothelial venules (HEVs), and lymphatic vessels. While T helper cells predominate in cancer TLS, the specific functions of their subpopulations remain inadequately understood. Notably, T follicular helper (Tfh) cells play a central role in the activation of CD8<sup>+</sup> T cells, and both Tfh cells and Tfh-associated genes have been linked to enhanced CRC survival. In stage II CRC TLS, an escalation in the number of FoxP3<sup>+</sup> T regulatory cells (Tregs) is regarded as a negative prognostic factor. Moreover, within TLS, T lymphocytes shield B lymphocytes from the immunosuppressive effects of the TME. B lymphocyte activation is succeeded by class recombination (CSR) and somatic hypermutation (SHM). Dendritic cells (DCs) constitute a vital cellular component of the TLS T compartment. During steady state and early stages of CRC, specialized antigen-presenting cells such as DCs migrate to regional lymph nodes through afferent lymphatics. They deliver MHC antigen-derived peptide complexes (tumor antigens) to naïve CD4<sup>+</sup> and CD8<sup>+</sup> T cells, which subsequently infiltrate the tumor site as antigen-specific T cells. Key DC markers studied in TLS include CD83 and DC-LAMP. Research has indicated that the DC-LAMP gene signature in tumor TLS reflects Th1 cell targeting, cytotoxicity, and T cell activation. This review comprehensively outlines the functions performed by distinct cell subsets within tertiary lymphoid structures (TLS) in tumors.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 6","pages":"236-245"},"PeriodicalIF":1.4,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11744347/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Genetic factors are effective reagents in susceptibility to multiple sclerosis (MS). Previous studies have shown the relationship between heat shock protein (HSP) gene polymorphisms. So, HSP70 single nucleotide polymorphisms (SNPs) were evaluated as MS risk factors. Here, DNA genotyping was done for HSP70 gene polymorphisms, including HSP70-1 +190 G>C, HSP70-1 -110 A>C, HSP70-1 +438 A>C, and HSP70-hom +2437 A>G in two groups including Iranian MS patients and controls. A standard phenol/chloroform method isolated DNA samples from peripheral blood. Sequence-specific amplification (SSP) polymerase chain reaction (PCR) was used for genotyping polymorphisms. Overall, 76 (35.80%) MS patients and 136 (65.10%) controls were studied with an age mean of 36.0 ± 8.0 years. Female/male was significantly higher in patients than in controls (4.43 vs. 0.10, P < 0.001). The average age was significantly lower in patients (P < 0.001). The most common clinical feature was relapsing-remitting (RR) MS; more than half of the population was Fars. Results showed that genotypes of HSP70-hom +2437 C>T had a significant relation with MS (OR = 2.0, 95% CI = 1.0-5.0, P = 0.03) and the same applies to HSP70-1 -110 A>C (OR = 0.0, 95% CI = 0.0-1.0, P < 0.001). Allele and genotype frequency of two other HSP70 SNPs (HSP70-1 +190 G>C, HSP70-1 +438 A>C) showed no significant differences between patients and controls. HSP70-hom +2437 C>T and HSP70-1 -110 A>C can be considered as risk factors for MS in our population. However, other HSP SNPs should be studied in a larger population in the future.
遗传因素是影响多发性硬化症易感性的有效因素。以往的研究已经证实了热休克蛋白(HSP)基因多态性之间的关系。因此,HSP70单核苷酸多态性(snp)被评价为MS的危险因素。在伊朗MS患者和对照组中,对HSP70基因多态性进行了DNA基因分型,包括HSP70-1 +190 G>C、HSP70-1 -110 A>C、HSP70-1 +438 A>C和HSP70- home +2437 A>G。标准的苯酚/氯仿法从外周血中分离DNA样本。序列特异性扩增(SSP)聚合酶链反应(PCR)用于基因分型多态性。总的来说,76例(35.80%)MS患者和136例(65.10%)对照者被研究,平均年龄为36.0±8.0岁。患者中女性/男性比例显著高于对照组(4.43 vs. 0.10, P < 0.001)。患者的平均年龄明显降低(P < 0.001)。最常见的临床特征是复发缓解型(RR) MS;一半以上的人口是法尔人。结果表明,HSP70-hom +2437 C>T基因型与MS有显著相关性(OR = 2.0, 95% CI = 1.0 ~ 5.0, P = 0.03), HSP70-1 -110 a >C基因型与MS有显著相关性(OR = 0.0, 95% CI = 0.0 ~ 1.0, P < 0.001)。另外两个HSP70 snp (HSP70-1 +190 G>C, HSP70-1 +438 A>C)的等位基因和基因型频率在患者和对照组之间无显著差异。hsp70 - hsp70 +2437℃和HSP70-1 -110℃可被认为是我们人群中多发性硬化症的危险因素。然而,其他的HSP snp需要在未来更大的人群中进行研究。
{"title":"Heat shock protein 70 gene polymorphisms in Iranian patients with Multiple sclerosis.","authors":"Azam Bakhshandeh, Alireza Kargar Dolatabadi, Touraj Farazmanfar, Majid Shahbazi","doi":"10.62347/CMYA9839","DOIUrl":"10.62347/CMYA9839","url":null,"abstract":"<p><p>Genetic factors are effective reagents in susceptibility to multiple sclerosis (MS). Previous studies have shown the relationship between heat shock protein (HSP) gene polymorphisms. So, HSP70 single nucleotide polymorphisms (SNPs) were evaluated as MS risk factors. Here, DNA genotyping was done for HSP70 gene polymorphisms, including HSP70-1 +190 G>C, HSP70-1 -110 A>C, HSP70-1 +438 A>C, and HSP70-hom +2437 A>G in two groups including Iranian MS patients and controls. A standard phenol/chloroform method isolated DNA samples from peripheral blood. Sequence-specific amplification (SSP) polymerase chain reaction (PCR) was used for genotyping polymorphisms. Overall, 76 (35.80%) MS patients and 136 (65.10%) controls were studied with an age mean of 36.0 ± 8.0 years. Female/male was significantly higher in patients than in controls (4.43 vs. 0.10, <i>P</i> < 0.001). The average age was significantly lower in patients (<i>P</i> < 0.001). The most common clinical feature was relapsing-remitting (RR) MS; more than half of the population was Fars. Results showed that genotypes of HSP70-hom +2437 C>T had a significant relation with MS (OR = 2.0, 95% CI = 1.0-5.0, P = 0.03) and the same applies to HSP70-1 -110 A>C (OR = 0.0, 95% CI = 0.0-1.0, P < 0.001). Allele and genotype frequency of two other HSP70 SNPs (HSP70-1 +190 G>C, HSP70-1 +438 A>C) showed no significant differences between patients and controls. HSP70-hom +2437 C>T and HSP70-1 -110 A>C can be considered as risk factors for MS in our population. However, other HSP SNPs should be studied in a larger population in the future.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 6","pages":"278-284"},"PeriodicalIF":1.4,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11744348/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-25eCollection Date: 2024-01-01DOI: 10.62347/ULTA9461
Judy Bai, Qing Li
Since the COVID-19 pandemic, a significant number of pediatric leukemia patients have shown to have also contracted COVID-19 several weeks or months prior to the development of their cancer. Current research indicates the expression of MDA5, encoded by IFIH1, is associated with increased immunity to COVID-19 in children. Children are also known to have a much lower risk of developing leukemia. Our hypothesis is that IFIH1 and its regulatory miRNAs are biomarkers associated with pediatric leukemia; the objective of our study is to identify genes, through miRNA targeting mechanisms, which may be biomarkers associated with COVID-19 infection and leukemia. The database TarBase was analyzed to identify miRNAs that target IFIH1, followed by the identification of other genes regulated by IFIH1's targeting miRNAs, to construct a gene-miRNA targeting network. Protein-Protein Interaction (PPI) analysis and DAVID/KEGG pathway analysis were conducted to identify genes with meaningful biological interactions and pathways. We identified two significant miRNAs, hsa-196a-5p and hsa-196b-5p, and 51 of their targeted and highly expressed genes reported in the Acute Myeloid Leukemia (AML) samples from The Cancer Genome Atlas (TCGA) RNA sequencing database. When conducting additional analysis using the Gene Constellation module of the Immunological Genome Project for the top three candidate genes, several other genes were identified to be highly correlated with STAT3 and IFIH1 in our study. Based on our investigation into co-expression analysis, we found that IFIH1 is a potential biomarker for AML. We are expanding our work to create a machine learning model to identify other biomarkers, examine the significance of various parameters (age, race, etc.), and perform comorbidity network analysis for other potential genes/miRNAs.
{"title":"Predicting candidate biomarkers for COVID-19 associated with leukemia in children.","authors":"Judy Bai, Qing Li","doi":"10.62347/ULTA9461","DOIUrl":"10.62347/ULTA9461","url":null,"abstract":"<p><p>Since the COVID-19 pandemic, a significant number of pediatric leukemia patients have shown to have also contracted COVID-19 several weeks or months prior to the development of their cancer. Current research indicates the expression of MDA5, encoded by <i>IFIH1</i>, is associated with increased immunity to COVID-19 in children. Children are also known to have a much lower risk of developing leukemia. Our hypothesis is that <i>IFIH1</i> and its regulatory miRNAs are biomarkers associated with pediatric leukemia; the objective of our study is to identify genes, through miRNA targeting mechanisms, which may be biomarkers associated with COVID-19 infection and leukemia. The database TarBase was analyzed to identify miRNAs that target <i>IFIH1</i>, followed by the identification of other genes regulated by <i>IFIH1</i>'s targeting miRNAs, to construct a gene-miRNA targeting network. Protein-Protein Interaction (PPI) analysis and DAVID/KEGG pathway analysis were conducted to identify genes with meaningful biological interactions and pathways. We identified two significant miRNAs, <i>hsa-196a-5p</i> and <i>hsa-196b-5p</i>, and 51 of their targeted and highly expressed genes reported in the Acute Myeloid Leukemia (AML) samples from The Cancer Genome Atlas (TCGA) RNA sequencing database. When conducting additional analysis using the Gene Constellation module of the Immunological Genome Project for the top three candidate genes, several other genes were identified to be highly correlated with <i>STAT3</i> and <i>IFIH1</i> in our study. Based on our investigation into co-expression analysis, we found that <i>IFIH1</i> is a potential biomarker for AML. We are expanding our work to create a machine learning model to identify other biomarkers, examine the significance of various parameters (age, race, etc.), and perform comorbidity network analysis for other potential genes/miRNAs.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 6","pages":"246-258"},"PeriodicalIF":1.4,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11744346/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017219","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25eCollection Date: 2024-01-01DOI: 10.62347/ITSO6879
Mengyuan Hu, Wenshi Hu, Ziyu Zhang
In recent years, complex interactions between intratumoral bacteria and neutrophils have been identified as significant factors in tumor occurrence and development. This commentary synthesizes findings from the past five years to explore these interactions. It is observed that during tumor progression, intratumoral bacteria promote neutrophil infiltration and the formation of neutrophil extracellular traps (NETs), which in turn drive tumor development and metastasis. Conversely, infiltrating neutrophils are also capable of slowing tumor progression by limiting the number of intratumoral bacteria. This dual role underscores a potential avenue for improving cancer treatment outcomes.
{"title":"Interaction between intratumoral microbiota and neutrophils influences tumor progression.","authors":"Mengyuan Hu, Wenshi Hu, Ziyu Zhang","doi":"10.62347/ITSO6879","DOIUrl":"10.62347/ITSO6879","url":null,"abstract":"<p><p>In recent years, complex interactions between intratumoral bacteria and neutrophils have been identified as significant factors in tumor occurrence and development. This commentary synthesizes findings from the past five years to explore these interactions. It is observed that during tumor progression, intratumoral bacteria promote neutrophil infiltration and the formation of neutrophil extracellular traps (NETs), which in turn drive tumor development and metastasis. Conversely, infiltrating neutrophils are also capable of slowing tumor progression by limiting the number of intratumoral bacteria. This dual role underscores a potential avenue for improving cancer treatment outcomes.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 5","pages":"233-235"},"PeriodicalIF":1.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11578806/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142712115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25eCollection Date: 2024-01-01DOI: 10.62347/XXUS7058
Xin He, Jiayi Liu, Renxin Ji
Objective: To investigate the efficacy of core stabilization training based on biofeedback for postpartum rectus abdominis muscle separation.
Methods: Thirty patients aged 20-35 years with rectus diastasis after pregnancy were randomly divided into experimental group and control group. The control group received routine core stabilization training, including abdominal breathing training, bridge exercises and kneeling abdominal exercises. The experimental group performed core stabilization training based on biofeedback. Before and after intervention, rectus abdominis muscle distance, waist circumference and abdominal circumference were evaluated in the two groups, and rectus abdominis muscle separation, waist circumference and abdominal circumference improvement were analyzed in the two groups.
Results: There was no significant difference between the two groups before treatment (P > 0.05), and there was significant difference between the two groups after treatment and before treatment. After treatment, the experimental group was further improved compared with the control group. After treatment, the distance between rectus muscles, abdominal circumference and waist circumference in both groups were decreased compared with those before treatment (P < 0.05). The distance between rectus muscles, abdominal circumference and waist circumference of the experimental group were smaller than those of the control group (P < 0.05).
Conclusion: Core stabilization training based on biofeedback can effectively improve the symptoms of patients with postpartum rectus diastasis, help to reduce waist circumference and abdominal circumference, and accelerate the recovery of postpartum body shape.
{"title":"Application research of core stability training based on biofeedback in postpartum rectus abdominis muscle separation.","authors":"Xin He, Jiayi Liu, Renxin Ji","doi":"10.62347/XXUS7058","DOIUrl":"10.62347/XXUS7058","url":null,"abstract":"<p><strong>Objective: </strong>To investigate the efficacy of core stabilization training based on biofeedback for postpartum rectus abdominis muscle separation.</p><p><strong>Methods: </strong>Thirty patients aged 20-35 years with rectus diastasis after pregnancy were randomly divided into experimental group and control group. The control group received routine core stabilization training, including abdominal breathing training, bridge exercises and kneeling abdominal exercises. The experimental group performed core stabilization training based on biofeedback. Before and after intervention, rectus abdominis muscle distance, waist circumference and abdominal circumference were evaluated in the two groups, and rectus abdominis muscle separation, waist circumference and abdominal circumference improvement were analyzed in the two groups.</p><p><strong>Results: </strong>There was no significant difference between the two groups before treatment (<i>P</i> > 0.05), and there was significant difference between the two groups after treatment and before treatment. After treatment, the experimental group was further improved compared with the control group. After treatment, the distance between rectus muscles, abdominal circumference and waist circumference in both groups were decreased compared with those before treatment (<i>P</i> < 0.05). The distance between rectus muscles, abdominal circumference and waist circumference of the experimental group were smaller than those of the control group (<i>P</i> < 0.05).</p><p><strong>Conclusion: </strong>Core stabilization training based on biofeedback can effectively improve the symptoms of patients with postpartum rectus diastasis, help to reduce waist circumference and abdominal circumference, and accelerate the recovery of postpartum body shape.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 5","pages":"226-232"},"PeriodicalIF":1.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11578805/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142712079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-25eCollection Date: 2024-01-01DOI: 10.62347/XNNO3661
Mohammed Alassiri, Asma Alanazi, Tlili Barhoumi, Bahauddeen Alrfaei, Maisa Alanazi, Mamoon Rashid, Aiman S Alhazmi, Mohammed Alasseiri, Abdulrahman AlMefleh, Mohammad Boudjelal, Hayat Shaibah, Khawlah Almuhalhil, Fatmah A Mansour, Zeyad Alehaideb, Bandar Alghanem
Background: Adiponectin (AQ) plays a role in regulating immune responses. Previous research indicates that B cells can affect T cell transmigration via the adiponectin-induced peptide PEPITEM in Caucasians. This study explores whether this mechanism is also applicable to Saudi populations, considering potential ethnic variations in immune response.
Methods: We conducted unbiased peptidomic screen on B cells, NK cells, and monocytes isolated from the peripheral blood of male healthy Saudi donors. The cells were stimulated with AQ, and the secretion of PEPITEM and other peptides was assessed using liquid chromatography-mass spectrometry (LC-MS/MS). Flow cytometry was utilized to confirm the purity of isolated cell populations and to verify the expression of adiponectin receptors AR1 and AR2.
Results: PEPITEM was not detected in the supernatants of AQ-stimulated B cells, NK cells, or monocytes. All three cell populations were isolated and purified with high purity, confirmed by flow cytometry showing AR1 and AR2 expression on the surface of these cells. Specifically, less than 47% of B cells expressed ARs, with AR1 at 12% and AR2 at 17%. AQ stimulation increased the number of identified peptides in B cells and monocytes but decreased peptide numbers in NK cells. Dimensionality reduction analysis demonstrated clear segregation of cell types, with strong reproducibility across technical replicates.
Conclusion: The inability of B cells to release PEPITEM in response to AQ stimulation is an interesting finding and it needs more confirmatory tests and experiments, however; a hypothesis about the impact of predisposing factors, such as ethnicity could be formulated and tested in the future.
背景:脂肪连接素(AQ)在调节免疫反应中发挥作用。以前的研究表明,在白种人中,B 细胞可通过脂肪连接素诱导的多肽 PEPITEM 影响 T 细胞的迁移。考虑到免疫反应中潜在的种族差异,本研究探讨了这一机制是否也适用于沙特人:我们对从沙特男性健康捐献者外周血中分离出的 B 细胞、NK 细胞和单核细胞进行了无偏见的肽组筛选。用 AQ 刺激细胞,并使用液相色谱-质谱联用仪(LC-MS/MS)评估 PEPITEM 和其他肽的分泌情况。利用流式细胞术确认分离细胞群的纯度,并验证脂肪素受体 AR1 和 AR2 的表达:结果:在AQ刺激的B细胞、NK细胞或单核细胞的上清液中均未检测到PEPITEM。流式细胞仪显示这些细胞表面均有 AR1 和 AR2 表达,从而证实了这三种细胞群的分离和纯化纯度都很高。具体来说,只有不到 47% 的 B 细胞表达 ARs,其中 AR1 为 12%,AR2 为 17%。AQ刺激增加了B细胞和单核细胞中识别出的肽的数量,但减少了NK细胞中肽的数量。降维分析显示了细胞类型的明显分离,并且在不同技术重复中具有很强的可重复性:B细胞在AQ刺激下不能释放PEPITEM是一个有趣的发现,需要更多的确认测试和实验。
{"title":"Preliminary findings on the absence of PEPITEM release in B cells isolated from Saudi donors: implications for expanded population studies.","authors":"Mohammed Alassiri, Asma Alanazi, Tlili Barhoumi, Bahauddeen Alrfaei, Maisa Alanazi, Mamoon Rashid, Aiman S Alhazmi, Mohammed Alasseiri, Abdulrahman AlMefleh, Mohammad Boudjelal, Hayat Shaibah, Khawlah Almuhalhil, Fatmah A Mansour, Zeyad Alehaideb, Bandar Alghanem","doi":"10.62347/XNNO3661","DOIUrl":"10.62347/XNNO3661","url":null,"abstract":"<p><strong>Background: </strong>Adiponectin (AQ) plays a role in regulating immune responses. Previous research indicates that B cells can affect T cell transmigration via the adiponectin-induced peptide PEPITEM in Caucasians. This study explores whether this mechanism is also applicable to Saudi populations, considering potential ethnic variations in immune response.</p><p><strong>Methods: </strong>We conducted unbiased peptidomic screen on B cells, NK cells, and monocytes isolated from the peripheral blood of male healthy Saudi donors. The cells were stimulated with AQ, and the secretion of PEPITEM and other peptides was assessed using liquid chromatography-mass spectrometry (LC-MS/MS). Flow cytometry was utilized to confirm the purity of isolated cell populations and to verify the expression of adiponectin receptors AR1 and AR2.</p><p><strong>Results: </strong>PEPITEM was not detected in the supernatants of AQ-stimulated B cells, NK cells, or monocytes. All three cell populations were isolated and purified with high purity, confirmed by flow cytometry showing AR1 and AR2 expression on the surface of these cells. Specifically, less than 47% of B cells expressed ARs, with AR1 at 12% and AR2 at 17%. AQ stimulation increased the number of identified peptides in B cells and monocytes but decreased peptide numbers in NK cells. Dimensionality reduction analysis demonstrated clear segregation of cell types, with strong reproducibility across technical replicates.</p><p><strong>Conclusion: </strong>The inability of B cells to release PEPITEM in response to AQ stimulation is an interesting finding and it needs more confirmatory tests and experiments, however; a hypothesis about the impact of predisposing factors, such as ethnicity could be formulated and tested in the future.</p>","PeriodicalId":72163,"journal":{"name":"American journal of clinical and experimental immunology","volume":"13 5","pages":"215-225"},"PeriodicalIF":1.4,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11578804/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142712123","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}