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TGF-β induces excessive pulmonary IL-6 secretion in cystic fibrosis via PI3K. TGFβ通过PI3K诱导囊性纤维化患者过度的肺IL-6分泌。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-09-08 DOI: 10.1152/ajplung.00183.2025
Grace Scharf, Cynthia R Davidson, Vladimir Ustiyan, Lauren G Falkenberg, Amulya Adavalli, Jessica D Meeker, Hunter Morgan, Alicia J Ostmann, Kristin M Hudock, John J Brewington, John P Clancy, Elizabeth L Kramer

Cystic fibrosis (CF) is characterized by impaired mucociliary clearance and pulmonary infections. Accumulating evidence suggests that fundamentally abnormal inflammatory responses also contribute to CF pathology. Transforming growth factor β (TGF-β), a pleiotropic cytokine, is a modifier of CF lung disease; its mechanism of action in CF is unclear. Previous studies have shown that TGF-β induces interleukin-6 (IL-6) secretion from lung epithelium, which may drive worse pulmonary outcomes in CF and other lung diseases. However, the nature of the TGF-β/IL-6 relationship in CF is not fully understood. In this study, we demonstrated that TGF-β and IL-6 concentrations were positively associated in bronchoalveolar lavage fluid from children with CF. Furthermore, pulmonary TGF-β exposure in a CF mouse model induced heightened IL-6 secretion when compared with non-CF mice. CF airway epithelial cells had increased IL-6 secretion and phosphoinositide 3-kinase (PI3K) signaling after TGF-β exposure. In wild-type airway epithelium, TGF-β exposure and cystic fibrosis transmembrane conductance regulator (CFTR) inhibition synergistically provoked IL-6 secretion. Restoration of CFTR function by a CFTR modulator and inhibition of PI3K signaling both normalized IL-6 secretion from CF airway epithelial cells. These data indicate that TGF-β drives abnormal IL-6 secretion via the PI3K pathway in the CF airway, demonstrating an inherent inflammatory abnormality in CF and suggesting potential therapeutic targets.NEW & NOTEWORTHY The etiology of IL-6 oversecretion in cystic fibrosis (CF) is unclear, as is the mechanism of CF lung disease modification by TGF-β. We show that TGF-β induces IL-6 oversecretion in human and mouse models of CF. In mechanistic studies, we further demonstrate that loss of CFTR function drives increased IL-6 secretion via the PI3K pathway downstream of TGF-β. Treatment of CF airway epithelial cells with a CFTR modulator rescues this IL-6 oversecretion.

囊性纤维化(CF)的特征是粘膜纤毛清除受损和肺部感染。越来越多的证据表明,从根本上说,异常的炎症反应也有助于CF病理。TGFβ是一种多效细胞因子,是CF肺病的调节剂;其在CF中的作用机制尚不清楚。先前的研究表明,TGFβ诱导肺上皮分泌IL-6,这可能导致CF和其他肺部疾病的肺部预后恶化。然而,TGFβ/IL-6在CF中的关系尚不完全清楚。在这项研究中,我们证明了CF患儿支气管肺泡灌洗液中TGFβ和IL-6浓度呈正相关。此外,与非CF小鼠相比,CF小鼠模型中暴露于肺部TGFβ可诱导IL-6分泌增加。TGFβ暴露后,CF气道上皮细胞IL-6分泌和PI3K信号传导增加。在野生型气道上皮中,TGFβ暴露和CFTR抑制协同刺激IL-6分泌。CFTR调节剂恢复CFTR功能和抑制PI3K信号均可使CF气道上皮细胞IL-6分泌正常化。这些数据表明,TGFβ通过PI3K途径驱动CF气道中IL-6分泌异常,表明CF存在固有的炎症异常,并提示潜在的治疗靶点。
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引用次数: 0
Corrigendum for Nwozor et al., volume 328, 2024, p. L724-L737. Nwozor等人的勘误表,第328卷,2024年,第L724-L737页。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 DOI: 10.1152/ajplung.00223.2024_COR
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引用次数: 0
High-fat diet obesity exacerbates acute lung injury-induced dysregulation of fatty acid oxidation in alveolar epithelial type 2 cells. 高脂肪饮食肥胖加重肺泡上皮2型细胞脂肪酸氧化失调引起的急性肺损伤。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-07-22 DOI: 10.1152/ajplung.00406.2024
Eleni Kallinos, Kuei-Pin Chung, Lisa K Torres, Divya Bhatia, Baran Ersoy, Peter Carmeliet, William Zhang, Heather W Stout-Delgado, Augustine M K Choi, Maria Plataki

Obesity is a risk factor for acute respiratory distress syndrome (ARDS). We previously showed that obesity is linked to increased lung injury and bronchoalveolar lavage fluid (BALF) fatty acids in a hyperoxic model of ARDS. We sought to expand our understanding of this association and examined the effect of obesity on β-oxidation (FAO), the mitochondrial process of breaking down fatty acids, in alveolar epithelial type 2 cells (AEC2s) in hyperoxia-induced ARDS. AEC2 were isolated from mice receiving 60% versus 10% fat diet. Carnitine palmitoyltransferase 1A (CPT1A) mediates the transport of fatty acids into mitochondria for subsequent FAO. Cpt1aloxp/loxpSftpcCreERT2+/- mice were generated with AEC2-specific CPT1A downregulation. Obesity was associated with intracellular lipid accumulation and increased expression of CPT1A in AEC2 after hyperoxia. Mitochondrial FAO; however, was significantly transcriptionally downregulated in AEC2 of obese mice compared with lean mice after hyperoxia. AEC2 from obese mice exhibited more severe mitochondrial bioenergetic failure and reduced ATP production after hyperoxia compared with lean mice. Consistent with earlier reports linking FAO perturbation to surfactant impairment, we also observed that high-fat diet was associated with reduced surfactant-related phospholipids in hyperoxic AEC2 and increased BALF surface tension, although obese Cpt1aloxp/loxpSftpcCreERT2+/- mice were not protected from increased lung injury. In a reanalysis of a human single-cell lung atlas of COVID-19 ARDS, the downregulation of the FAO signature in AEC2 was significant only in obese, and not lean, patients with ARDS compared with controls. These findings demonstrate a previously underappreciated effect of diet on AEC2 function in acute lung injury.NEW & NOTEWORTHY High-fat diet obesity is linked to increased lung injury and bronchoalveolar lavage fluid (BALF) fatty acids in a hyperoxic ARDS model. In the present study, obesity not only upregulated intracellular lipids and effectors of fatty acid mitochondrial import but also was associated with downregulated fatty acid oxidation and reduced ATP production in alveolar epithelial type 2 cells after injury. Hyperoxic AEC2 from obese mice had reduced phospholipids, and obese mice had increased BALF surface tension after injury.

肥胖是急性呼吸窘迫综合征(ARDS)的危险因素。我们之前在ARDS高氧模型中发现肥胖与肺损伤和支气管肺泡灌洗液(BALF)脂肪酸增加有关。我们试图扩大我们对这种关联的理解,并研究了肥胖对高氧诱导的ARDS中肺泡上皮2型细胞(AEC2) β-氧化(FAO)的影响,这是一种线粒体分解脂肪酸的过程。分别从脂肪含量为60%和10%的小鼠中分离出AEC2。肉毒碱棕榈酰基转移酶1A (CPT1A)介导脂肪酸向线粒体的转运,以供随后的FAO使用。Cpt1aloxp/loxpSftpcCreERT2+/-小鼠产生AEC2特异性CPT1A下调。肥胖与高氧后AEC2细胞内脂质积累和CPT1A表达增加有关。然而,与低氧小鼠相比,肥胖小鼠AEC2中的线粒体FAO在转录上明显下调。与瘦小鼠相比,肥胖小鼠的AEC2在高氧后表现出更严重的线粒体生物能量衰竭和ATP产生减少。与先前将FAO扰动与表面活性剂损伤联系起来的报道一致,我们还观察到高脂肪饮食与高氧AEC2中表面活性剂相关磷脂的减少和BALF表面张力的增加有关,尽管肥胖的Cpt1aloxp/loxpSftpcCreERT2+/-小鼠并没有受到肺损伤增加的保护。在对covid - 19 ARDS人类单细胞肺图谱的重新分析中,与对照组相比,AEC2中FAO特征的下调仅在肥胖ARDS患者中显着,而在瘦弱ARDS患者中则不显着。这些发现表明,在急性肺损伤中,饮食对AEC2功能的影响以前未被充分认识。
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引用次数: 0
The pathophysiology of acute lung injury following intestinal ischemia-reperfusion. 肠缺血再灌注后急性肺损伤的病理生理学研究。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-08-06 DOI: 10.1152/ajplung.00052.2025
Mickael Palmier, Sylvain Fraineau, Angela Sutton, Hanna Hlawaty, Jeremy Bellien, Didier Plissonnier

Acute mesenteric ischemia (AMI) is a severe and life-threatening condition with a mortality rate of up to 50%. Its treatment, which depends on the etiology, focuses on preserving intestinal viability through prompt restoration of blood flow. Although it is well established that intestinal ischemia-reperfusion results in significant local tissue damage, it is less recognized that it can also lead to remote tissue injuries, particularly in the lungs. Acute lung injury following intestinal ischemia-reperfusion is a severe complication that affects nearly 30% of patients with acute mesenteric ischemia and significantly contributes to mortality. The underlying pathophysiology of this injury is complex and multifactorial, yet it remains poorly understood. Neutrophil-endothelial interactions, regulated by both systemic and local mediators, play a pivotal role. Among the contributing factors, the intestinal ischemia-reperfusion process itself appears to be the most significant. Reperfusion of the ischemic intestine allows the release of mediators generated during ischemia into the systemic circulation. This triggers a cascade of biological events, including elevated levels of proinflammatory cytokines, overproduction of reactive oxygen species (ROS), nitric oxide imbalance, neutrophil activation, mitochondrial damage, and the initiation of cell death pathways. Here, we review the current knowledge on the various pathophysiological pathways explored in clinical and animal models of acute lung injury induced by intestinal ischemia-reperfusion, with the aim of providing therapeutic insights.

急性肠系膜缺血是一种严重的危及生命的疾病,死亡率高达50%。其治疗取决于病因,重点是通过迅速恢复血液流动来保持肠道活力。众所周知,肠缺血再灌注会导致显著的局部组织损伤,但很少有人认识到它也会导致远端组织损伤,尤其是肺组织损伤。肠缺血再灌注后急性肺损伤是影响近30%急性肠系膜缺血患者的严重并发症,是导致死亡率的重要因素。这种损伤的潜在病理生理学是复杂和多因素的,但它仍然知之甚少。中性粒细胞-内皮相互作用,由系统和局部介质调节,发挥关键作用。其中,肠道缺血再灌注过程本身似乎是最重要的因素。缺血肠的再灌注使缺血过程中产生的介质释放到体循环中。这引发了一系列生物事件,包括促炎细胞因子水平升高、活性氧(ROS)过量产生、一氧化氮失衡、中性粒细胞激活、线粒体损伤和细胞死亡途径的启动。在这里,我们回顾了目前在肠缺血再灌注引起的急性肺损伤的临床和动物模型中探索的各种病理生理途径的知识,旨在提供治疗见解。
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引用次数: 0
The value of deep inspirations. 深刻灵感的价值。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-08-01 DOI: 10.1152/ajplung.00249.2025
Gary C Sieck
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引用次数: 0
Opportunity knocks: the fourth cohort of the American Journal of Physiology-Lung Cellular and Molecular Physiology Early Career Editorial Fellowship Program. 机会敲门:美国生理学杂志-肺细胞和分子生理学早期职业编辑奖学金计划的第四届队列。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-07-23 DOI: 10.1152/ajplung.00238.2025
Larissa A Shimoda, Cristina M Alvira, Julie A Bastarache, Rodney D Britt, Rachel S Knipe, Wolfgang M Kuebler, Thiago S Moreira, Eric P Schmidt
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引用次数: 0
Bioenergetics and metabolism of the pulmonary endothelium. Scientific session I: ReSPIRE 2025. 肺内皮的生物能量学和代谢:科学会议1,呼吸2025。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-08-11 DOI: 10.1152/ajplung.00222.2025
Reece P Stevens, Justin T Roberts, Wolfgang M Kuebler, Ji Young Lee, Karthik Suresh, Rebecca F Hough

Session I of the inaugural biennial Research Symposium on Pulmonary Injury and Repair of the Endothelium (ReSPIRE) highlighted recent advances in endothelial bioenergetics and metabolism and their role in pulmonary vascular diseases. Emerging evidence suggests that the maladaptation of metabolic pathways in the lung endothelium contributes to the progression of the acute respiratory distress syndrome (ARDS) and pulmonary arterial hypertension (PAH). The conference highlighted several new aspects of endothelial metabolism, including the use of alternative fuel sources such as fructose and fatty acids, inflammatory signaling mediated by mitochondrial depolarization, bioenergetic reprogramming through isoform switching of genes during hypoxia, and feedback regulation of metabolism by hypercapnia. Ultimately, these findings point to future research directions aimed at identifying mechanisms of dysregulated endothelial metabolism, which could serve as therapeutic targets for pulmonary vascular diseases.

首届两年一次的肺损伤和内皮修复研究研讨会(ReSPIRE)第一届会议强调了内皮生物能量学和代谢及其在肺血管疾病中的作用的最新进展。新出现的证据表明,肺内皮代谢途径的不适应有助于急性呼吸窘迫综合征(ARDS)和肺动脉高压(PAH)的进展。会议强调了内皮代谢的几个新方面,包括果糖和脂肪酸等替代燃料来源的使用,线粒体去极化介导的炎症信号,缺氧时通过基因异型开关进行的生物能量重编程,以及高碳酸血症对代谢的反馈调节。最终,这些发现指出了未来的研究方向,旨在确定内皮代谢失调的机制,从而作为肺血管疾病的治疗靶点。
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引用次数: 0
Functional modulation of retrotrapezoid neurons drives fentanyl-induced respiratory depression. 后梯形神经元的功能调节驱动芬太尼诱导的呼吸抑制。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-07-22 DOI: 10.1152/ajplung.00025.2025
Thiago S Moreira, Nicholas J Burgraff, Ana C Takakura, Luiz M Oliveira, Emmanuel V de Araujo, Steven Guan, Jan-Marino Ramirez

The primary cause of death from opioid overdose is opioid-induced respiratory depression (OIRD), characterized by severe suppression of respiratory rate, destabilized breathing patterns, hypercapnia, and heightened risk of apnea. The retrotrapezoid nucleus (RTN), a critical chemosensitive brainstem region in the rostral ventrolateral medullary reticular formation, contains Phox2b+/neuromedin-B (Nmb) propriobulbar neurons. These neurons, stimulated by CO2/H+, regulate breathing to prevent respiratory acidosis. Since the RTN shows limited expression of opioid receptors, we expected that opioid-induced hypoventilation should activate these neurons to restore ventilation and stabilize arterial blood gases. However, the ability of the RTN to stimulate ventilation during OIRD has never been tested. We used optogenetic and pharmacogenetic approaches, to activate and inhibit RTN Phox2b+/Nmb+ neurons before and after fentanyl administration. As expected, fentanyl (500 µg/kg ip) suppressed respiratory rate and destabilized breathing. Before fentanyl, optogenetic stimulation of Phox2b+/Nmb+ or chemogenetic inhibition of Nmb+ cells increased and decreased breathing activity, respectively. Surprisingly, optogenetic stimulation after fentanyl administration caused a significantly greater increase in breathing activity compared with prefentanyl levels. In contrast, chemogenetic inhibition of RTN Nmb neurons caused profound hypoventilation and breathing instability after fentanyl. The results suggest that fentanyl does not inhibit the ability of Phox2b+/Nmb+ cells within the RTN region to stimulate breathing. Thus, this study highlights the potential of stimulating RTN neurons as a possible therapeutic approach to restore respiratory function in cases of opioid-induced respiratory depression (OIRD).NEW & NOTEWORTHY Opioid-induced respiratory depression (OIRD) suppresses breathing and destabilizes ventilation. Using optogenetic and chemogenetic tools, we demonstrated that stimulating retrotrapezoid nucleus (RTN) Phox2b+/Nmb+ neurons enhances breathing, even after fentanyl administration, whereas their inhibition exacerbates hypoventilation. These findings reveal that RTN neurons retain their ability to drive ventilation during OIRD, highlighting their potential as a therapeutic target to restore respiratory function in opioid overdose cases.

阿片类药物过量死亡的主要原因是阿片类药物引起的呼吸抑制(OIRD),其特征是呼吸频率严重抑制、呼吸模式不稳定、高碳酸血症和呼吸暂停风险增加。后梯形核(RTN)是吻侧腹侧延髓网状结构中一个关键的化学敏感脑干区域,含有Phox2b+/Neuromedin-B (Nmb)本体球神经元。这些神经元受到CO2/H+的刺激,调节呼吸,防止呼吸性酸中毒。由于RTN显示阿片受体的表达有限,我们预计阿片诱导的低通气应该激活这些神经元以恢复通气并稳定动脉血气。然而,RTN在OIRD期间刺激通气的能力从未被测试过。我们采用光遗传学和药物遗传学方法,在芬太尼给药前后激活和抑制RTN Phox2b+/Nmb+神经元。正如预期的那样,芬太尼(500 μg/kg, ip)抑制呼吸频率和呼吸不稳定。在芬太尼之前,光遗传刺激Phox2b+/Nmb+或化学发生抑制Nmb+细胞分别增加和减少呼吸活动。令人惊讶的是,与芬太尼前相比,芬太尼给药后的光遗传刺激导致呼吸活动显著增加。相比之下,芬太尼对RTN Nmb神经元的化学发生抑制导致深度低通气和呼吸不稳定。结果表明,芬太尼不会抑制RTN区域内Phox2b+/Nmb+细胞刺激呼吸的能力。因此,本研究强调了刺激RTN神经元作为恢复OIRD病例呼吸功能的可能治疗方法的潜力。
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引用次数: 0
A cannabinoid receptor 1 inverse agonist induces weight loss and reduces airway hyperresponsiveness in a mouse model of obese asthma. 大麻素受体1逆激动剂在肥胖哮喘小鼠模型中诱导体重减轻并降低气道高反应性。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-07-24 DOI: 10.1152/ajplung.00049.2025
Carolyn R Morris, Ravishankar Chandrasekaran, Isabella M Butzirus, Nirav Daphtary, Minara Aliyeva, Allison M Manuel, William G Tharp, Jason H T Bates, Vikas Anathy, Matthew E Poynter, Jianmin Duan, Geneviève Gaucher, Glenn D Crater, Anne E Dixon

Most people with severe asthma have obesity. Metabolic dysfunction, often associated with obesity, is particularly associated with severe asthma. Mechanisms linking metabolic dysfunction with asthma, and whether improving metabolic function can affect asthma, are not known. The endocannabinoid system plays a significant role in metabolism; inhibition of cannabinoid receptor 1 (CB1R) induces weight loss and improves serum lipid profiles. We used a CB1R inverse agonist, INV-202, in a mouse model of obese asthma and investigated changes in weight, inflammation, airway reactivity, and surfactant lipids. Mice were fed low or high-fat diets (LFD, HFD), and house dust mite (HDM) extract was delivered intranasally to induce allergic airway inflammation. Mice received INV-202 by oral gavage. Airway hyperresponsiveness was measured by FlexiVent, and lung tissue cytokines were measured by ELISA. Leukocytes and lipids in the bronchoalveolar lavage fluid (BALF) were analyzed by flow cytometry and mass spectroscopy, respectively. LFD and HFD mice lost an average of 11% and 27% of their body weight, respectively. LFD mice had a 33% decrease in CCL20 in lung tissue and a 55% decrease in neutrophils in BALF. LFD and HFD mice had improvements in airway hyperresponsiveness, particularly as measured by reduced elastance. Phosphatidylglycerol in BALF increased with INV-202, which significantly correlated with compliance in LFD mice. This study supports a significant contribution of metabolic factors related to the endocannabinoid system in lung compliance and airway reactivity, in part through effects on surfactant lipid composition, and demonstrates the potential of CB1R inverse agonists to treat obese asthma.NEW & NOTEWORTHY Inhibition of the cannabinoid receptor 1, through a pharmacological inverse agonist, not only induces weight loss in a mouse model of obese asthma but also reduces airway hyperresponsiveness, particularly through decreasing elastance/increasing compliance.

大多数患有严重哮喘的人都患有肥胖症。代谢功能障碍通常与肥胖有关,尤其与严重哮喘有关。代谢功能障碍与哮喘之间的联系机制,以及改善代谢功能是否能影响哮喘,目前尚不清楚。内源性大麻素系统在代谢中起重要作用;抑制大麻素受体1 (CB1R)诱导体重减轻和改善血脂谱。我们在肥胖哮喘小鼠模型中使用了CB1R逆激动剂INV-202,并研究了体重、炎症、气道反应性和表面活性剂脂质的变化。小鼠分别饲喂低脂或高脂饲粮(低脂、高脂),并经鼻给予屋尘螨提取物(HDM)诱导过敏性气道炎症。小鼠经灌胃注射INV-202。采用柔度法检测气道高反应性,ELISA法检测肺组织细胞因子。用流式细胞术和质谱法分别分析支气管肺泡灌洗液(BALF)中的白细胞和脂质。LFD和HFD小鼠平均分别减轻了11%和27%的体重。LFD小鼠肺组织中CCL20减少33%,BALF中中性粒细胞减少55%。LFD和HFD小鼠的气道高反应性有所改善,特别是通过降低弹性来测量。vv -202增加了LFD小鼠BALF中磷脂酰甘油的含量,与依从性显著相关。本研究支持了与内源性大麻素系统相关的代谢因子对肺顺应性和气道反应性的重要贡献,部分通过对表面活性剂脂质组成的影响,并证明了CB1R逆激动剂治疗肥胖哮喘的潜力。
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引用次数: 0
A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity. 跨发育和疾病严重程度的急性新生儿肺损伤的空间转录组图谱。
IF 3.5 2区 医学 Q1 PHYSIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-08-01 DOI: 10.1152/ajplung.00191.2025
Saahithi Mallapragada, Ruqian Lyu, Arianna L Williams-Katek, Brandon K Fischer, Annika Vannan, Niran Hadad, Evan D Mee, Shawyon P Shirazi, Christopher S Jetter, Nicholas M Negretti, Anne Hilgendorff, Laurie C Eldredge, Gail H Deutsch, Davis J McCarthy, Jonathan A Kropski, Jennifer M S Sucre, Nicholas E Banovich

A molecular understanding of lung organogenesis requires delineation of the timing and regulation of the cellular transitions that ultimately form and support a surface capable of gas exchange. Although the advent of single-cell transcriptomics has allowed for the discovery and identification of transcriptionally distinct cell populations present during lung development, the spatiotemporal dynamics of these transcriptional shifts remain undefined. With imaging-based spatial transcriptomics, we analyzed the gene expression patterns in 17 human infant lungs at varying stages of development and injury, creating a spatial transcriptomic atlas of approximately 1.2 million cells. We applied computational clustering approaches to identify shared molecular patterns among this cohort, informing how tissue architecture and molecular spatial relationships are coordinated during development and disrupted in disease. Recognizing that all preterm birth represents an injury to the developing lung, we created a simplified classification scheme that relies upon the routinely collected objective measures of gestational age and lifespan. Within this framework, we have identified cell type patterns across gestational age and life span variables that would likely be overlooked when using the conventional "disease versus control" binary comparison. Together, these data represent an open resource for the lung research community, supporting discovery-based inquiry and identification of targetable molecular mechanisms in both normal and arrested human lung development.NEW & NOTEWORTHY Mapping the spatial and temporal transcriptional relationships during lung development is fundamental to understanding regeneration and chronic lung disease; however, the classification of samples as control or disease is especially challenging in the setting of preterm birth (itself a lung injury). Here, we report the largest neonatal lung transcriptomic atlas to date and an analysis framework based only on gestational age and lifespan, providing a new resource for hypothesis generation to the lung community.

对肺器官发生的分子理解需要描述细胞转变的时间和调节,最终形成并支持能够气体交换的表面。虽然单细胞转录组学的出现已经允许发现和鉴定在肺发育过程中存在的转录不同的细胞群,但这些转录变化的时空动态仍然不明确。利用基于成像的空间转录组学,我们分析了17个处于不同发育和损伤阶段的人类婴儿肺部的基因表达模式,创建了约120万个细胞的空间转录组图谱。我们应用计算聚类方法来确定该队列中共享的分子模式,了解组织结构和分子空间关系如何在发育过程中协调并在疾病中中断。认识到所有早产都是对发育中的肺部的伤害,我们建立了一个简化的分类方案,该方案依赖于常规收集的胎龄和寿命的客观测量。在这个框架内,我们已经确定了在使用传统的“疾病与对照”二元比较时可能被忽视的胎龄和寿命变量的细胞类型模式。总之,这些数据代表了肺部研究界的一个开放资源,支持基于发现的调查和确定正常和停滞人类肺部发育的靶向分子机制。
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引用次数: 0
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American journal of physiology. Lung cellular and molecular physiology
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