HIV infection is currently the single biggest epidemic globally. HIV the etiologic agent for AIDS is divided into two types: HIV-1 and HIV-2. HIV-2 is rare and is mainly found in some parts of West Africa. HIV-1 accounts for most cases of AIDS reported globally. HIV-1 strains can be classified into four groups: The "major" group M, group O, group N and the most recent group P. All of which may represent separate introductions of SIVs into humans. This cross sectional study determined the HIV-1 subtype diversity in Busia, Western Kenya. Briefly, participants were consented into the study based on pre-determined inclusion criteria. Viral RNA quantification was performed to select participants with virologic failure for drug resistance testing. HIV drug resistance testing (DRT) was performed and sequences obtained were used to determine circulating HIV-1 subtypes using the REGA HIV-1 Subtyping Tool Version 3.0. Phylogenetic analysis was performed using MEGA software V7.0 to confirm the circulating HIV subtypes. Out of 915 participants screened, 146 participants had virologic failure although 140 were successfully sequenced. Subtype A1 was the most prevalent subtype present in 52.9% of the participants followed by subtype D (20.7%), CRF A1_D (7.1%) subtype C and subtype B (4.3%) and subtype A2 (3.6%). Sequences within the same subtype and CRF clustered close together on the phylogenetic tree. An increase in CRFs in the population compared to previous studies. Circulating HIV subtypes should be continually monitored in Busia to determine trends in transmission and map the circulating recombinant forms for epidemiological purposes. Key words: HIV-1, Busia county, subtype diversity, reverse transcriptase.
{"title":"Human immunodeficiency virus type 1 (HIV-1) subtype diversity in Busia, Western Kenya","authors":"J. Kingoo, A. Muigai, V. Matiru, S. Khamadi","doi":"10.5897/AJMR2021.9510","DOIUrl":"https://doi.org/10.5897/AJMR2021.9510","url":null,"abstract":"HIV infection is currently the single biggest epidemic globally. HIV the etiologic agent for AIDS is divided into two types: HIV-1 and HIV-2. HIV-2 is rare and is mainly found in some parts of West Africa. HIV-1 accounts for most cases of AIDS reported globally. HIV-1 strains can be classified into four groups: The \"major\" group M, group O, group N and the most recent group P. All of which may represent separate introductions of SIVs into humans. This cross sectional study determined the HIV-1 subtype diversity in Busia, Western Kenya. Briefly, participants were consented into the study based on pre-determined inclusion criteria. Viral RNA quantification was performed to select participants with virologic failure for drug resistance testing. HIV drug resistance testing (DRT) was performed and sequences obtained were used to determine circulating HIV-1 subtypes using the REGA HIV-1 Subtyping Tool Version 3.0. Phylogenetic analysis was performed using MEGA software V7.0 to confirm the circulating HIV subtypes. Out of 915 participants screened, 146 participants had virologic failure although 140 were successfully sequenced. Subtype A1 was the most prevalent subtype present in 52.9% of the participants followed by subtype D (20.7%), CRF A1_D (7.1%) subtype C and subtype B (4.3%) and subtype A2 (3.6%). Sequences within the same subtype and CRF clustered close together on the phylogenetic tree. An increase in CRFs in the population compared to previous studies. Circulating HIV subtypes should be continually monitored in Busia to determine trends in transmission and map the circulating recombinant forms for epidemiological purposes. \u0000 \u0000 \u0000 \u0000 Key words: HIV-1, Busia county, subtype diversity, reverse transcriptase.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":"15 1","pages":"482-489"},"PeriodicalIF":0.0,"publicationDate":"2021-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47389903","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hamidou Compaoré, Serge Samandoulougou, Fidèle Wend-bénédo Tapsoba, Alima Bambara, Hissein Ratongue, Ignace Sawadogo, Donatien Kaboré, Pane B. Ouattara-Sourabie, H. Sawadogo-Lingani
The frequency of occurrence and four principal kinds of aflatoxin concentration in maize seeds grown in Burkina Faso was investigated. Ten (10) samples collected, were analyzed by high performance liquid chromatography (HPLC) with post-column derivatisation after immunoaffinity column cleanup. Eight strains of Aspergillus section Flavi were previously isolated from these samples and cultivated on “Aspergillus flavus and parasiticus agar (AFPA)” to ascertain if they belong to A. flavus or A. parasiticus species. The qualitative ability of aflatoxin production was also previously performed by fluorescence emission under ultra violet light at 365 nm after four (4) days of incubation at 30 °C on Coconut Agar Medium (CAM). Results showed that 70% of samples were contaminated by aflatoxins. The levels ranged from 0.93 to 58.94 µg/kg. Samples M1 and M10 had high concentrations, 58.94 µg/kg and 70.73 µg/kg; whereas M4 and M5 had low concentrations from 1.68 to 0.93 µg/kg, respectively. In these samples, four were contaminated with aflatoxin B1 (AFB1) and aflatoxin G1 (AFG1), two with AFB1 and aflatoxin B2 (AFB2) and one (01) with AFB1 only. We notice that AFB1 was the most prevalent member of aflatoxins, and AFG2 was absent in all samples. Key words: Maize, Aspergillus, aflatoxins, HPLC, Burkina Faso.
{"title":"Aflatoxigenic potential of Aspergillus section Flavi isolated from maize seeds, in Burkina Faso","authors":"Hamidou Compaoré, Serge Samandoulougou, Fidèle Wend-bénédo Tapsoba, Alima Bambara, Hissein Ratongue, Ignace Sawadogo, Donatien Kaboré, Pane B. Ouattara-Sourabie, H. Sawadogo-Lingani","doi":"10.5897/AJMR2021.9553","DOIUrl":"https://doi.org/10.5897/AJMR2021.9553","url":null,"abstract":"The frequency of occurrence and four principal kinds of aflatoxin concentration in maize seeds grown in Burkina Faso was investigated. Ten (10) samples collected, were analyzed by high performance liquid chromatography (HPLC) with post-column derivatisation after immunoaffinity column cleanup. Eight strains of Aspergillus section Flavi were previously isolated from these samples and cultivated on “Aspergillus flavus and parasiticus agar (AFPA)” to ascertain if they belong to A. flavus or A. parasiticus species. The qualitative ability of aflatoxin production was also previously performed by fluorescence emission under ultra violet light at 365 nm after four (4) days of incubation at 30 °C on Coconut Agar Medium (CAM). Results showed that 70% of samples were contaminated by aflatoxins. The levels ranged from 0.93 to 58.94 µg/kg. Samples M1 and M10 had high concentrations, 58.94 µg/kg and 70.73 µg/kg; whereas M4 and M5 had low concentrations from 1.68 to 0.93 µg/kg, respectively. In these samples, four were contaminated with aflatoxin B1 (AFB1) and aflatoxin G1 (AFG1), two with AFB1 and aflatoxin B2 (AFB2) and one (01) with AFB1 only. We notice that AFB1 was the most prevalent member of aflatoxins, and AFG2 was absent in all samples. \u0000 \u0000 \u0000 \u0000 Key words: Maize, Aspergillus, aflatoxins, HPLC, Burkina Faso.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44677366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Tarig, H. E. Elmutuz, M. A. Faisel, A. Khalid, S. Mohammad, A. Tawfiq, H. A. Eltayib
{"title":"Phenotypic and genotypic characterization of antibiotic resistant gram negative bacteria isolated in Tabuk City, Saudi Arabia","authors":"M. Tarig, H. E. Elmutuz, M. A. Faisel, A. Khalid, S. Mohammad, A. Tawfiq, H. A. Eltayib","doi":"10.5897/ajmr2021.9556","DOIUrl":"https://doi.org/10.5897/ajmr2021.9556","url":null,"abstract":"","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":"15 1","pages":"433-439"},"PeriodicalIF":0.0,"publicationDate":"2021-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44777963","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The physicochemical, microbial and heavy metal contamination of palm oil samples randomly selected from three different markets (Ankpa, Anyigba and Idah Markets) in Kogi State, Nigeria, was investigated. The results revealed the presence of moisture (0.5, 0.4, 0.4%); impurity (0.4, 0.4, 0.3%) and free fatty acid (13, 12.8, 12.3%) for Ankpa, Anyigba and Idah Markets respectively. The microbial contaminants isolated were Enterobacter sp, Bacillus sp, Proteus sp, Micrococcus sp, Staphylococcus sp, Pseudomonas sp, Aspergillus sp, Candida sp, Mucor sp, Rhizopus sp and Penicillium sp. The presence (ppm) of heavy metals in the samples was analyzed using atomic absorption spectroscopy for chromium, cadmium, lead, arsenic, copper and iron. All the tested metals except chromium and lead were detected in samples from Anyigba Market with the mean concentration of arsenic (0.29), iron (4.66), cadmium (0.001) and copper (0.006). The metals detected in samples from Idah Market were cadmium (0.46), arsenic (0.19), iron (7.34), chromium (0.04) and copper (0.03). Only three metals, arsenic (0.04) cadmium (0.01) and iron (1.88) were detected in samples from Ankpa Market. From the findings, the microbial load of the samples fell within the acceptable limits stipulated by World Health Organization limits. However, most of the heavy metals assayed for were above acceptable limits. The present findings indicate the need for refining of locally produced palm oil to eliminate metal contaminants because of the health implication of their accumulation in the body. Key words: Heavy metals, microbial contamination, palm oil, Kogi East, Nigeria.
{"title":"Heavy metals and microbial contamination of palm oil produced and sold at some markets in Kogi East Area, Kogi State, Nigeria","authors":"S. Enemuor, A. Adige, V. C. Okechukwu","doi":"10.5897/ajmr2021.9564","DOIUrl":"https://doi.org/10.5897/ajmr2021.9564","url":null,"abstract":"The physicochemical, microbial and heavy metal contamination of palm oil samples randomly selected from three different markets (Ankpa, Anyigba and Idah Markets) in Kogi State, Nigeria, was investigated. The results revealed the presence of moisture (0.5, 0.4, 0.4%); impurity (0.4, 0.4, 0.3%) and free fatty acid (13, 12.8, 12.3%) for Ankpa, Anyigba and Idah Markets respectively. The microbial contaminants isolated were Enterobacter sp, Bacillus sp, Proteus sp, Micrococcus sp, Staphylococcus sp, Pseudomonas sp, Aspergillus sp, Candida sp, Mucor sp, Rhizopus sp and Penicillium sp. The presence (ppm) of heavy metals in the samples was analyzed using atomic absorption spectroscopy for chromium, cadmium, lead, arsenic, copper and iron. All the tested metals except chromium and lead were detected in samples from Anyigba Market with the mean concentration of arsenic (0.29), iron (4.66), cadmium (0.001) and copper (0.006). The metals detected in samples from Idah Market were cadmium (0.46), arsenic (0.19), iron (7.34), chromium (0.04) and copper (0.03). Only three metals, arsenic (0.04) cadmium (0.01) and iron (1.88) were detected in samples from Ankpa Market. From the findings, the microbial load of the samples fell within the acceptable limits stipulated by World Health Organization limits. However, most of the heavy metals assayed for were above acceptable limits. The present findings indicate the need for refining of locally produced palm oil to eliminate metal contaminants because of the health implication of their accumulation in the body. \u0000 \u0000 \u0000 \u0000 Key words: Heavy metals, microbial contamination, palm oil, Kogi East, Nigeria.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41637270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. E., Fatimata B. Josiane Diarra, J. Bonkoungou, Charles Sawadogo, Boubié G. Bationo, Hervé Ky, Patrick Djim-Madjim Madingar, Abdoul Salam Ou edraogo, I. Sanou
This study aimed to determine the prevalence of extended spectrum beta-lactamase producing (ESBL) and multidrug resistant Escherichia coli and Klebsiella pneumoniae. A cross-sectional study was conducted in Ouagadougou in two poultry farms and two slaughterhouses. 375 cloacal swabs and 46 environment samples were collected and members of Enterobacteriaceae were isolated on EMB agar containing 4 µg/L of cefotaxime. E. coli and K. pneumoniae were identified using biochemical tests and ESBL production was confirmed by the double-disc synergy test. Antibiotic susceptibility was determined by the disc diffusion method. Prevalence of faecal ESBL producing E. coli and K. pneumoniae was 12.11% (95% CI = 9.3-15.6). In sampling sites, the prevalence were 5.15% in Farm A, 2.22% in Farm B, 17.50% in slaughterhouse C, 20.59% in slaughterhouse D and 19.57% in environment. E. coli (n = 43) and K. pneumoniae (n = 13) were frequently identified. ESBL-producing E. coli and K. pneumoniae MDR was 89.29% (95% CI = 78.5–95.0). Resistance to aminoglycosides was 6.25% in poultry and 10.00% in slaughterhouse, fluoroquinolones 32.5% in slaughterhouse, sulfonamides 100% in poultry and 82.50% slaughterhouse, tetracycline 100% in poultry and 95.0% in slaughterhouse. This study showed that antimicrobial resistance in poultry in Ouagadougou portends a serious problem. Key words: Escherichia coli, Klebsiella pneumoniae, extended-spectrum β-lactamase (ESBL), poultry, farms, slaughterhouses, Ouagadougou.
{"title":"Prevalence and characterization of extended-spectrum ?-lactamase-producing Escherichia coli and Klebsiella pneumoniae isolated from poultry in Ouagadougou, Burkina Faso","authors":"S. E., Fatimata B. Josiane Diarra, J. Bonkoungou, Charles Sawadogo, Boubié G. Bationo, Hervé Ky, Patrick Djim-Madjim Madingar, Abdoul Salam Ou edraogo, I. Sanou","doi":"10.5897/ajmr2021.9489","DOIUrl":"https://doi.org/10.5897/ajmr2021.9489","url":null,"abstract":"This study aimed to determine the prevalence of extended spectrum beta-lactamase producing (ESBL) and multidrug resistant Escherichia coli and Klebsiella pneumoniae. A cross-sectional study was conducted in Ouagadougou in two poultry farms and two slaughterhouses. 375 cloacal swabs and 46 environment samples were collected and members of Enterobacteriaceae were isolated on EMB agar containing 4 µg/L of cefotaxime. E. coli and K. pneumoniae were identified using biochemical tests and ESBL production was confirmed by the double-disc synergy test. Antibiotic susceptibility was determined by the disc diffusion method. Prevalence of faecal ESBL producing E. coli and K. pneumoniae was 12.11% (95% CI = 9.3-15.6). In sampling sites, the prevalence were 5.15% in Farm A, 2.22% in Farm B, 17.50% in slaughterhouse C, 20.59% in slaughterhouse D and 19.57% in environment. E. coli (n = 43) and K. pneumoniae (n = 13) were frequently identified. ESBL-producing E. coli and K. pneumoniae MDR was 89.29% (95% CI = 78.5–95.0). Resistance to aminoglycosides was 6.25% in poultry and 10.00% in slaughterhouse, fluoroquinolones 32.5% in slaughterhouse, sulfonamides 100% in poultry and 82.50% slaughterhouse, tetracycline 100% in poultry and 95.0% in slaughterhouse. This study showed that antimicrobial resistance in poultry in Ouagadougou portends a serious problem. \u0000 \u0000 \u0000 \u0000 Key words: Escherichia coli, Klebsiella pneumoniae, extended-spectrum β-lactamase (ESBL), poultry, farms, slaughterhouses, Ouagadougou.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49399030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
O. Ogundare, S. K. Odetunde, M. Omotayo, O. O. Sokefun, Rasheed O. Akindiya, Adetayo Akinboro
This study evaluated the preservative ability of protein-like cell free supernatants produced by lactic acid bacteria (LAB) isolates from samples of Ictalurus punctatus (Cat fish) and slurry of fermented Zea mays (Ogi). The LAB strains were separately isolated from understudied samples using De Man, Rogosa and Sharpe (MRS) media at 37°C for 48 h. The isolated strains were characterized with Gram staining, oxidase and catalase tests, microscopy study, carbohydrate fermentation, acid production and NaCl tolerance. Thereafter, the protein concentrations of crude bacteriocin supernatants from the Gram positive, rod shaped, oxidase and catalase negative strains were studied. Also, the growth inhibition of Bacillus subtilis, Staphyloccocus aureus and Escherichia coli, heat stability, pH tolerance, effect of proteolytic enzyme and biopreservation efficiency of protein-like cell free supernatants (crude bacteriocins) were determined. Biopreservative efficiency of the crude bacteriocin samples was also determined in orange (Citrus sinenses) and Titus fish (Scomber scombrus). The isolates from intestine of I. punctatus and fermented Z. mays fermented carbohydrate, and grew optimally at 3% NaCl, and 10 and 37°C, respectively. They inhibited the multiplication of E. coli at various extents, but more effective on different strains. The bacteriocins from slurry of fermented Z. mays on the other hand, were more potent in E. coli (22.7 ± 0.8 mm) than S. aureus (7.9 ± 0.1 mm). The biopreservative efficiency of crude bacteriocin from I. punctatus was greater than that of Z. mays. The LAB obtained from the selected samples produced protein-like substances in form of bacteriocins with potent antibacterial and biopreservative proficiencies through the growth inhibition of tested pathogens and low colony counts on tested food samples, respectively. Bacterial isolates obtained from samples of I. punctatus and Z. mays can be successfully used in the preservation of food and vegetables. Key words: Ictalurus punctatus, Zea mays, bacteriocin, protein-like substances, biopreservative ability.
{"title":"Biopreservative application of bacteriocins obtained from samples Ictalurus punctatus and fermented Zea mays","authors":"O. Ogundare, S. K. Odetunde, M. Omotayo, O. O. Sokefun, Rasheed O. Akindiya, Adetayo Akinboro","doi":"10.5897/AJMR2017.8443","DOIUrl":"https://doi.org/10.5897/AJMR2017.8443","url":null,"abstract":"This study evaluated the preservative ability of protein-like cell free supernatants produced by lactic acid bacteria (LAB) isolates from samples of Ictalurus punctatus (Cat fish) and slurry of fermented Zea mays (Ogi). The LAB strains were separately isolated from understudied samples using De Man, Rogosa and Sharpe (MRS) media at 37°C for 48 h. The isolated strains were characterized with Gram staining, oxidase and catalase tests, microscopy study, carbohydrate fermentation, acid production and NaCl tolerance. Thereafter, the protein concentrations of crude bacteriocin supernatants from the Gram positive, rod shaped, oxidase and catalase negative strains were studied. Also, the growth inhibition of Bacillus subtilis, Staphyloccocus aureus and Escherichia coli, heat stability, pH tolerance, effect of proteolytic enzyme and biopreservation efficiency of protein-like cell free supernatants (crude bacteriocins) were determined. Biopreservative efficiency of the crude bacteriocin samples was also determined in orange (Citrus sinenses) and Titus fish (Scomber scombrus). The isolates from intestine of I. punctatus and fermented Z. mays fermented carbohydrate, and grew optimally at 3% NaCl, and 10 and 37°C, respectively. They inhibited the multiplication of E. coli at various extents, but more effective on different strains. The bacteriocins from slurry of fermented Z. mays on the other hand, were more potent in E. coli (22.7 ± 0.8 mm) than S. aureus (7.9 ± 0.1 mm). The biopreservative efficiency of crude bacteriocin from I. punctatus was greater than that of Z. mays. The LAB obtained from the selected samples produced protein-like substances in form of bacteriocins with potent antibacterial and biopreservative proficiencies through the growth inhibition of tested pathogens and low colony counts on tested food samples, respectively. Bacterial isolates obtained from samples of I. punctatus and Z. mays can be successfully used in the preservation of food and vegetables. \u0000 \u0000 \u0000 \u0000 Key words: Ictalurus punctatus, Zea mays, bacteriocin, protein-like substances, biopreservative ability.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48571910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Legionella pneumophila is an important pathogen and is involved in more than 95% of cases of severe atypical pneumonia. The current study focused on the ablution water in the grand mosque in Makkah as well as water tanks in hotels surrounding the holy mosque. A total of 100 water samples were collected from ablution water in the Haram and the hotels in the central area around the grand mosque and sent to the research laboratory of microbiology, Faculty of Medicine, University of Umm Al Qura. Samples were filtrated and inoculated onto buffer charcoal-yeast extract agar base and incubated at 37°C in a CO2 incubator. The plates were examined after seven days of incubation. Isolated organisms were confirmed by using the “Microgen Legionella” (latex agglutination test). Out of the 100 water samples tested, 11 samples were positive for L. pneumophila. All positive water samples were from hotels water tanks. This indicates that this type of bacteria existing in the water sources. So requires further research to cover all sources of water to avoid an outbreak of this infection among the pilgrims. To avoid the possibility of this, constant maintenance of hotel water tanks regularly and the use of chlorine in specific proportions according to recommended specifications can help reduce the spread of these microbial infections. Key words: Holy Mosque, Legionella pneumophila, water tanks, environmental.
{"title":"Detection of Legionella pneumophila as the cause of atypical pneumonia in the water sources of the holy places of Makkah","authors":"Sami S. Ashgar, Hamdi M. Al-Said","doi":"10.5897/AJMR2021.9515","DOIUrl":"https://doi.org/10.5897/AJMR2021.9515","url":null,"abstract":"Legionella pneumophila is an important pathogen and is involved in more than 95% of cases of severe atypical pneumonia. The current study focused on the ablution water in the grand mosque in Makkah as well as water tanks in hotels surrounding the holy mosque. A total of 100 water samples were collected from ablution water in the Haram and the hotels in the central area around the grand mosque and sent to the research laboratory of microbiology, Faculty of Medicine, University of Umm Al Qura. Samples were filtrated and inoculated onto buffer charcoal-yeast extract agar base and incubated at 37°C in a CO2 incubator. The plates were examined after seven days of incubation. Isolated organisms were confirmed by using the “Microgen Legionella” (latex agglutination test). Out of the 100 water samples tested, 11 samples were positive for L. pneumophila. All positive water samples were from hotels water tanks. This indicates that this type of bacteria existing in the water sources. So requires further research to cover all sources of water to avoid an outbreak of this infection among the pilgrims. To avoid the possibility of this, constant maintenance of hotel water tanks regularly and the use of chlorine in specific proportions according to recommended specifications can help reduce the spread of these microbial infections. \u0000 \u0000 \u0000 \u0000 Key words: Holy Mosque, Legionella pneumophila, water tanks, environmental.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48896183","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Orji Jo, T. Ayogu, C. B. Amaobi, I. Moses, E. Elom, C. Uzoh, J. O. Otu, C. Chukwunwejim, C. Okeh, C. Ikegbune, I. Peter, C. P. Igwe
The objective of this work was to evaluate the effect of bacteriocins from lactic acid bacteria (LAB) in Zea mays-based Ogi on some foodborne bacteria contaminating cabbage in Abakaliki, Nigeria. Ten (10) samples (5 samples of Z. mays-based Ogi and 5 samples of suspected contaminated cabbage heads) were aseptically collected and analyzed using standard microbiological methods. Five different Lactobacillus isolates (A, B, C, D, and E) were isolated from the Z. mays-based Ogi while 5 different species of bacterial pathogens; Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, Salmonella spp., and Shigella spp were isolated from cabbage heads. Results showed that Lactobacillus isolates exhibited high inhibitory effect against foodborne bacteria (S. aureus, E. coli, and Shigella spp) isolated from cabbage with inhibition zone diameter (IZD) ranging from 14 to 20 mm. A very high antimicrobial activity against foodborne bacteria isolated from cabbage was also observed for the crude bacteriocin at pH of 2. The stability of the antimicrobial affinity of the bacteriocin decreased as pH rises from 6 to 7. This study has shown that bacteriocin has antimicrobial activity against foodborne bacteria contaminating cabbage and could be used as bio-preservatives instead of hazardous chemical preservatives with adverse effects on the human body. Key words: Lactic acid bacteria, bacteriocin, Zea mays, cabbage, fermented food, Ogi.
{"title":"Effect of bacteriocins from lactic acid bacteria obtained from Zea mays-based Ogi on foodborne bacteria from contaminated cabbage","authors":"Orji Jo, T. Ayogu, C. B. Amaobi, I. Moses, E. Elom, C. Uzoh, J. O. Otu, C. Chukwunwejim, C. Okeh, C. Ikegbune, I. Peter, C. P. Igwe","doi":"10.5897/ajmr2021.9560","DOIUrl":"https://doi.org/10.5897/ajmr2021.9560","url":null,"abstract":"The objective of this work was to evaluate the effect of bacteriocins from lactic acid bacteria (LAB) in Zea mays-based Ogi on some foodborne bacteria contaminating cabbage in Abakaliki, Nigeria. Ten (10) samples (5 samples of Z. mays-based Ogi and 5 samples of suspected contaminated cabbage heads) were aseptically collected and analyzed using standard microbiological methods. Five different Lactobacillus isolates (A, B, C, D, and E) were isolated from the Z. mays-based Ogi while 5 different species of bacterial pathogens; Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, Salmonella spp., and Shigella spp were isolated from cabbage heads. Results showed that Lactobacillus isolates exhibited high inhibitory effect against foodborne bacteria (S. aureus, E. coli, and Shigella spp) isolated from cabbage with inhibition zone diameter (IZD) ranging from 14 to 20 mm. A very high antimicrobial activity against foodborne bacteria isolated from cabbage was also observed for the crude bacteriocin at pH of 2. The stability of the antimicrobial affinity of the bacteriocin decreased as pH rises from 6 to 7. This study has shown that bacteriocin has antimicrobial activity against foodborne bacteria contaminating cabbage and could be used as bio-preservatives instead of hazardous chemical preservatives with adverse effects on the human body. \u0000 \u0000 \u0000 \u0000 Key words: Lactic acid bacteria, bacteriocin, Zea mays, cabbage, fermented food, Ogi.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44538371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nosocomial infections are enhanced due to a flop in the infection control processes such as disinfection. The aim of this study was to assess long term effectiveness and the stability of disinfectants currently used within healthcare settings in Accra, Ghana against two indicator pathogens. Two locally produced and two imported disinfectants usually used in health care settings were obtained. The efficacy and long-term stability of the disinfectants was done using the in-use method, with identified microbial culture isolates of Pseudomonas aeruginosa and Staphylococcus aureus. Counts of both test organisms (Pseudomonas aeruginosa and Staphylococcus aureus) were over and above the 5 ≥ CFU recommended standard. All the disinfectants failed the test. However, contamination was observed to be higher in local disinfectants as compared to those imported. Furthermore, Enterobacter spp was isolated as contaminant from one imported disinfected and Proteus spp was also isolated from one local disinfectant. Interestingly, one of the imported disinfectants (Disinfectant I) showed more stability and was effective in the long term. All disinfectants did not pass the in-use test. However, disinfectants that are produced locally are more unstable and ineffective. Key words: Infections, disinfectants, drug stability, hospital, pathogens, contamination.
{"title":"Long-term effectiveness of commonly used hospital disinfectants against Pseudomonas aeruginosa and Staphylococcus aureus","authors":"S. Odonkor, T. Mahami, A. Sallar","doi":"10.5897/ajmr2021.9545","DOIUrl":"https://doi.org/10.5897/ajmr2021.9545","url":null,"abstract":"Nosocomial infections are enhanced due to a flop in the infection control processes such as disinfection. The aim of this study was to assess long term effectiveness and the stability of disinfectants currently used within healthcare settings in Accra, Ghana against two indicator pathogens. Two locally produced and two imported disinfectants usually used in health care settings were obtained. The efficacy and long-term stability of the disinfectants was done using the in-use method, with identified microbial culture isolates of Pseudomonas aeruginosa and Staphylococcus aureus. Counts of both test organisms (Pseudomonas aeruginosa and Staphylococcus aureus) were over and above the 5 ≥ CFU recommended standard. All the disinfectants failed the test. However, contamination was observed to be higher in local disinfectants as compared to those imported. Furthermore, Enterobacter spp was isolated as contaminant from one imported disinfected and Proteus spp was also isolated from one local disinfectant. Interestingly, one of the imported disinfectants (Disinfectant I) showed more stability and was effective in the long term. All disinfectants did not pass the in-use test. However, disinfectants that are produced locally are more unstable and ineffective. \u0000 \u0000 \u0000 \u0000 Key words: Infections, disinfectants, drug stability, hospital, pathogens, contamination.","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44649248","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nigar Sultana Meghla, Debashish Mridha, Md. Sohel Rana, Md. Ahosanul Haque Shahid, M. Mahmud
Verotoxin-producing E. coli are getting an emergence for human health and day by day, it is also becoming more alarming in the fact that, they are acquiring multidrug-resistant profiles. This study aimed at isolation and identification of verotoxigenic E. coli followed by the antibiogram of the species from salad vegetables at Jashore district in Bangladesh. A total of 119 raw vegetable salad samples were collected from different areas of the Jashore district. The collected samples were initially enriched in nutrient broth and then used for streak plating on MacConkey and followed by Eosin Methylene Blue (EMB) agar media. Escherichia coli species were isolated and identified following observation of the cultural, microscopic, and biochemical characteristics and further analyzed to determine the presence of verotoxin (VT) producing genes through polymerase chain reaction (PCR) using specific primers (VT1, VT2, and Eae). A panel of antibiotics were tested following the disc diffusion method for determining the antibiotic profile. Total 55 (46.22%) E. coli was isolated phenotypically. 6 (10.9%) isolated E. coli showed positive by amplifying verotoxin-producing gene vt1, but none of the samples were positive vt2 and eaeA gene. Antibiogram for 55 E. coli isolates showed the highest resistance to Erythromycin (83.64%), Streptomycin (78.18%), Ceftriaxone (70.91%). On the other hand, the most heightened susceptibility was observed for Nalidixic acid (76.36%). Moreover, six vt1 positive isolates showed a multidrug-resistant profile. Thus, the presence of toxigenic genes in the isolates suggests the proper maintenance and regular monitoring of raw salad items should be increase to ensure healthy life in this region. Key words: Vegetable salad, Escherichia coli, verotoxin, antimicrobial resistant, polymerase chain reaction (PCR).
{"title":"Isolation, identification and antibiogram of verotoxin producing Escherichia coli from raw salad vegetables at Jashore, Bangladesh","authors":"Nigar Sultana Meghla, Debashish Mridha, Md. Sohel Rana, Md. Ahosanul Haque Shahid, M. Mahmud","doi":"10.5897/ajmr2021.9548","DOIUrl":"https://doi.org/10.5897/ajmr2021.9548","url":null,"abstract":"Verotoxin-producing E. coli are getting an emergence for human health and day by day, it is also becoming more alarming in the fact that, they are acquiring multidrug-resistant profiles. This study aimed at isolation and identification of verotoxigenic E. coli followed by the antibiogram of the species from salad vegetables at Jashore district in Bangladesh. A total of 119 raw vegetable salad samples were collected from different areas of the Jashore district. The collected samples were initially enriched in nutrient broth and then used for streak plating on MacConkey and followed by Eosin Methylene Blue (EMB) agar media. Escherichia coli species were isolated and identified following observation of the cultural, microscopic, and biochemical characteristics and further analyzed to determine the presence of verotoxin (VT) producing genes through polymerase chain reaction (PCR) using specific primers (VT1, VT2, and Eae). A panel of antibiotics were tested following the disc diffusion method for determining the antibiotic profile. Total 55 (46.22%) E. coli was isolated phenotypically. 6 (10.9%) isolated E. coli showed positive by amplifying verotoxin-producing gene vt1, but none of the samples were positive vt2 and eaeA gene. Antibiogram for 55 E. coli isolates showed the highest resistance to Erythromycin (83.64%), Streptomycin (78.18%), Ceftriaxone (70.91%). On the other hand, the most heightened susceptibility was observed for Nalidixic acid (76.36%). Moreover, six vt1 positive isolates showed a multidrug-resistant profile. Thus, the presence of toxigenic genes in the isolates suggests the proper maintenance and regular monitoring of raw salad items should be increase to ensure healthy life in this region. \u0000 \u0000 \u0000 \u0000 Key words: Vegetable salad, Escherichia coli, verotoxin, antimicrobial resistant, polymerase chain reaction (PCR).","PeriodicalId":7617,"journal":{"name":"African Journal of Microbiology Research","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48200133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
京公网安备 11010802042870号
京ICP备2023020795号-1
扫码关注我们
求助内容：
应助结果提醒方式：