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Evolution of Sensory Receptors. 感觉受体的进化。
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-21 DOI: 10.1146/annurev-cellbio-120123-112853
Wendy A Valencia-Montoya, Naomi E Pierce, Nicholas W Bellono

Sensory receptors are at the interface between an organism and its environment and thus represent key sites for biological innovation. Here, we survey major sensory receptor families to uncover emerging evolutionary patterns. Receptors for touch, temperature, and light constitute part of the ancestral sensory toolkit of animals, often predating the evolution of multicellularity and the nervous system. In contrast, chemoreceptors exhibit a dynamic history of lineage-specific expansions and contractions correlated with the disparate complexity of chemical environments. A recurring theme includes independent transitions from neurotransmitter receptors to sensory receptors of diverse stimuli from the outside world. We then provide an overview of the evolutionary mechanisms underlying sensory receptor diversification and highlight examples where signatures of natural selection are used to identify novel sensory adaptations. Finally, we discuss sensory receptors as evolutionary hotspots driving reproductive isolation and speciation, thereby contributing to the stunning diversity of animals.

感觉受体处于生物体与其环境之间的界面,因此是生物创新的关键场所。在这里,我们调查了主要的感觉受体家族,以揭示新出现的进化模式。触觉、温度和光受体是动物祖先感官工具包的一部分,往往早于多细胞性和神经系统的进化。相比之下,化学感受器则表现出与化学环境的不同复杂性相关的特定品系扩展和收缩的动态历史。一个反复出现的主题包括从神经递质受体独立过渡到外界各种刺激的感觉受体。然后,我们概述了感觉受体多样化背后的进化机制,并重点举例说明了利用自然选择特征来识别新型感觉适应性的方法。最后,我们讨论了感觉受体作为进化热点推动了生殖隔离和物种分化,从而促成了动物令人惊叹的多样性。
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引用次数: 0
Dormancy, Quiescence, and Diapause: Savings Accounts for Life. 休眠、静止和暂停:生命储蓄账户
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-21 DOI: 10.1146/annurev-cellbio-112122-022528
Hatice Özge Özgüldez, Aydan Bulut-Karslioğlu

Life on Earth has been through numerous challenges over eons and, one way or another, has always triumphed. From mass extinctions to more daily plights to find food, unpredictability is everywhere. The adaptability of life-forms to ever-changing environments is the key that confers life's robustness. Adaptability has become synonymous with Darwinian evolution mediated by heritable genetic changes. The extreme gene-centric view, while being of central significance, at times has clouded our appreciation of the cell as a self-regulating entity informed of, and informing, the genetic data. An essential element that powers adaptability is the ability to regulate cell growth. In this review, we provide an extensive overview of growth regulation spanning species, tissues, and regulatory mechanisms. We aim to highlight the commonalities, as well as differences, of these phenomena and their molecular regulators. Finally, we curate open questions and areas for further exploration.

地球上的生命在漫长的岁月中经历了无数挑战,但总是以这样或那样的方式取得胜利。从大面积的生物灭绝到更多的日常觅食困境,不可预知性无处不在。生命形式对不断变化的环境的适应能力是赋予生命强大生命力的关键。适应性已成为以遗传基因变化为媒介的达尔文进化论的代名词。这种极端的以基因为中心的观点虽然具有核心意义,但有时却遮蔽了我们对细胞作为一个自我调节实体的认识,因为细胞是由基因数据提供信息的。增强适应能力的一个基本要素是调节细胞生长的能力。在这篇综述中,我们广泛概述了跨越物种、组织和调控机制的生长调控。我们旨在强调这些现象及其分子调节机制的共性和差异。最后,我们提出了有待进一步探讨的开放性问题和领域。
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引用次数: 0
Left-Right Asymmetry in Invertebrates: From Molecules to Organisms. 无脊椎动物的左右不对称:从分子到生物。
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-21 DOI: 10.1146/annurev-cellbio-111822-010628
Reiko Kuroda

Although most animals appear symmetric externally, they exhibit chirality within their body cavity, i.e., in terms of asymmetric organ position, directional organ looping, and lateralized organ function. Left-right (LR) asymmetry is determined genetically by intricate molecular interactions that occur during development. Key genes have been elucidated in several species. There are common mechanisms in vertebrates and invertebrates, but some appear to exhibit unique mechanisms. This review focuses on LR asymmetry formation in invertebrates, particularly Drosophila, ascidians, and mollusks. It aims to understand the role of the genes that are key to creating LR asymmetry and how chirality information is converted/transmitted across the hierarchies from molecules to cells and from cells to tissues.

虽然大多数动物在外部看起来是对称的,但它们在体腔内却表现出手性,即器官位置不对称、器官定向循环和器官功能侧向化。左右(LR)不对称在基因上是由发育过程中发生的错综复杂的分子相互作用决定的。一些物种的关键基因已被阐明。脊椎动物和无脊椎动物有共同的机制,但有些似乎表现出独特的机制。本综述侧重于无脊椎动物,尤其是果蝇、腹足纲动物和软体动物的 LR 不对称形成。其目的是了解对形成 LR 不对称起关键作用的基因的作用,以及手性信息是如何在分子到细胞以及细胞到组织的整个层次中转换/传递的。
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引用次数: 0
What Makes Us Human: Insights from the Evolution and Development of the Human Neocortex. 是什么让我们成为人类:从人类新皮层的进化和发展中获得的启示》(What Makes Us Human: Insights from the Evolution and Development of the Human Neocortex)。
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-01 DOI: 10.1146/annurev-cellbio-112122-032521
Takashi Namba, Wieland B Huttner

"What makes us human?" is a central question of many research fields, notably anthropology. In this review, we focus on the development of the human neocortex, the part of the brain with a key role in cognition, to gain neurobiological insight toward answering this question. We first discuss cortical stem and progenitor cells and human-specific genes that affect their behavior. We thus aim to understand the molecular foundation of the expansion of the neocortex that occurred in the course of human evolution, as this expansion is generally thought to provide a basis for our unique cognitive abilities. We then review the emerging evidence pointing to differences in the development of the neocortex between present-day humans and Neanderthals, our closest relatives. Finally, we discuss human-specific genes that have been implicated in neuronal circuitry and offer a perspective for future studies addressing the question of what makes us human.

"是什么让我们成为人类?"这是许多研究领域,尤其是人类学领域的核心问题。在这篇综述中,我们将重点关注人类新皮层的发展,即大脑中在认知中起关键作用的部分,从而获得回答这一问题的神经生物学洞察力。我们首先讨论皮层干细胞和祖细胞以及影响其行为的人类特异基因。因此,我们旨在了解人类进化过程中新皮质扩展的分子基础,因为这种扩展通常被认为是人类独特认知能力的基础。然后,我们回顾了新出现的证据,这些证据表明现今人类与尼安德特人(我们的近亲)在新皮层发育方面存在差异。最后,我们讨论了与神经元回路有关的人类特异基因,并为未来研究 "是什么让我们成为人类 "这一问题提供了一个视角。
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引用次数: 0
Functionalized Protein Binders in Developmental Biology. 发育生物学中的功能化蛋白质粘合剂。
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-21 DOI: 10.1146/annurev-cellbio-112122-025214
Sophie T Schnider, M Alessandra Vigano, Markus Affolter, Gustavo Aguilar

Developmental biology has greatly profited from genetic and reverse genetic approaches to indirectly studying protein function. More recently, nanobodies and other protein binders derived from different synthetic scaffolds have been used to directly dissect protein function. Protein binders have been fused to functional domains, such as to lead to protein degradation, relocalization, visualization, or posttranslational modification of the target protein upon binding. The use of such functionalized protein binders has allowed the study of the proteome during development in an unprecedented manner. In the coming years, the advent of the computational design of protein binders, together with further advances in scaffold engineering and synthetic biology, will fuel the development of novel protein binder-based technologies. Studying the proteome with increased precision will contribute to a better understanding of the immense molecular complexities hidden in each step along the way to generate form and function during development.

发育生物学从间接研究蛋白质功能的遗传和反向遗传方法中获益匪浅。最近,从不同合成支架中提取的纳米抗体和其他蛋白质结合剂被用于直接剖析蛋白质功能。蛋白质结合体已与功能域融合,如在结合后导致蛋白质降解、重新定位、可视化或对目标蛋白质进行翻译后修饰。这种功能化蛋白质结合剂的使用使人们能够以前所未有的方式研究发育过程中的蛋白质组。未来几年,蛋白质结合剂计算设计的出现,以及支架工程和合成生物学的进一步发展,将推动基于蛋白质结合剂的新型技术的发展。更精确地研究蛋白质组将有助于更好地理解发育过程中产生形态和功能的每一步所隐藏的巨大分子复杂性。
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引用次数: 0
Mitochondrial Structure, Dynamics, and Physiology: Light Microscopy to Disentangle the Network. 线粒体结构、动力学和生理学:用光学显微镜解构网络。
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-21 DOI: 10.1146/annurev-cellbio-111822-114733
Juan C Landoni, Tatjana Kleele, Julius Winter, Willi Stepp, Suliana Manley

Mitochondria serve as energetic and signaling hubs of the cell: This function results from the complex interplay between their structure, function, dynamics, interactions, and molecular organization. The ability to observe and quantify these properties often represents the puzzle piece critical for deciphering the mechanisms behind mitochondrial function and dysfunction. Fluorescence microscopy addresses this critical need and has become increasingly powerful with the advent of superresolution methods and context-sensitive fluorescent probes. In this review, we delve into advanced light microscopy methods and analyses for studying mitochondrial ultrastructure, dynamics, and physiology, and highlight notable discoveries they enabled.

线粒体是细胞的能量和信号枢纽:这种功能是线粒体的结构、功能、动力学、相互作用和分子组织之间复杂相互作用的结果。观察和量化这些特性的能力往往是破译线粒体功能和功能障碍背后机制的关键谜题。荧光显微镜满足了这一关键需求,随着超分辨率方法和上下文敏感荧光探针的出现,荧光显微镜变得越来越强大。在这篇综述中,我们将深入探讨用于研究线粒体超微结构、动力学和生理学的先进光学显微镜方法和分析,并重点介绍它们带来的重大发现。
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引用次数: 0
The Organism as the Niche: Physiological States Crack the Code of Adult Neural Stem Cell Heterogeneity. 有机体是利基:生理状态破解了成人神经干细胞异质性的密码。
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-10-01 Epub Date: 2024-09-21 DOI: 10.1146/annurev-cellbio-120320-040213
Zayna Chaker, Eleni Makarouni, Fiona Doetsch

Neural stem cells (NSCs) persist in the adult mammalian brain and are able to give rise to new neurons and glia throughout life. The largest stem cell niche in the adult mouse brain is the ventricular-subventricular zone (V-SVZ) lining the lateral ventricles. Adult NSCs in the V-SVZ coexist in quiescent and actively proliferating states, and they exhibit a regionalized molecular identity. The importance of such spatial diversity is just emerging, as depending on their position within the niche, adult NSCs give rise to distinct subtypes of olfactory bulb interneurons and different types of glia. However, the functional relevance of stem cell heterogeneity in the V-SVZ is still poorly understood. Here, we put into perspective findings highlighting the importance of adult NSC diversity for brain plasticity, and how the body signals to brain stem cells in different physiological states to regulate their behavior.

神经干细胞(NSCs)在成年哺乳动物大脑中持续存在,并能在一生中产生新的神经元和胶质细胞。成年小鼠大脑中最大的干细胞龛是侧脑室内衬的脑室-室下区(V-SVZ)。V-SVZ中的成年非干细胞在静止和活跃增殖状态下共存,并表现出区域化的分子特征。这种空间多样性的重要性刚刚显现,因为根据其在生态位中的位置,成体 NSC 会产生不同亚型的嗅球中间神经元和不同类型的胶质细胞。然而,人们对V-SVZ干细胞异质性的功能相关性仍知之甚少。在这里,我们从研究结果的角度强调了成体NSC多样性对大脑可塑性的重要性,以及身体如何在不同生理状态下向大脑干细胞发出信号,以调节它们的行为。
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引用次数: 0
Exploring Mechanical Forces Shaping Self-Organization and Morphogenesis During Early Embryo Development 探索胚胎早期发育过程中塑造自我组织和形态发生的机械力
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-04-12 DOI: 10.1146/annurev-cellbio-120123-105748
Hong Huang, Shaorong Gao, Min Bao
Embryonic development is a dynamic process orchestrated by a delicate interplay of biochemical and biophysical factors. While the role of genetics and biochemistry in embryogenesis has been extensively studied, recent research has highlighted the significance of mechanical regulation in shaping and guiding this intricate process. Here, we provide an overview of the current understanding of the mechanical regulation of embryo development. We explore how mechanical forces generated by cells and tissues play a crucial role in driving the development of different stages. We examine key morphogenetic processes such as compaction, blastocyst formation, implantation, and egg cylinder formation, and discuss the mechanical mechanisms and cues involved. By synthesizing the current body of literature, we highlight the emerging concepts and open questions in the field of mechanical regulation. We aim to provide an overview of the field, inspiring future investigations and fostering a deeper understanding of the mechanical aspects of embryo development.
胚胎发育是一个由生物化学和生物物理因素微妙相互作用的动态过程。虽然遗传学和生物化学在胚胎发生中的作用已被广泛研究,但最近的研究强调了机械调控在塑造和引导这一复杂过程中的重要性。在此,我们概述了目前对胚胎发育机械调控的理解。我们探讨了细胞和组织产生的机械力如何在驱动不同阶段的发育过程中发挥关键作用。我们研究了压实、囊胚形成、植入和卵圆柱形成等关键形态发生过程,并讨论了其中涉及的机械机制和线索。通过综合现有文献,我们强调了机械调控领域的新兴概念和未决问题。我们的目标是提供该领域的概况,启发未来的研究,促进对胚胎发育机械方面的更深入了解。
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引用次数: 0
Thymic Mimetic Cells: Ontogeny as Immunology 胸腺模拟细胞:本体免疫学
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-04-12 DOI: 10.1146/annurev-cellbio-112122-023316
Daniel A. Michelson, Diane Mathis
Medullary thymic epithelial cells (mTECs) generate immunological self-tolerance by ectopically expressing peripheral-tissue antigens (PTAs) within the thymus to preview the peripheral self to maturing T cells. Recent work, drawing inspiration from old histological observations, has shown that subtypes of mTECs, collectively termed mimetic cells, co-opt developmental programs from throughout the organism to express biologically coherent groups of PTAs. Here, we review key aspects of mimetic cells, especially as they relate to the larger contexts of molecular, cellular, developmental, and evolutionary biology. We highlight lineage-defining transcription factors as key regulators of mimetic cells and speculate as to what other factors, including Aire and the chromatin potential of mTECs, permit mimetic cell differentiation and function. Last, we consider what mimetic cells can teach us about not only the thymus but also other tissues.
胸腺髓质上皮细胞(mTECs)在胸腺内异位表达外周组织抗原(PTAs),向成熟的T细胞预告外周自身,从而产生免疫学上的自身耐受。最近的工作从古老的组织学观察中汲取灵感,显示出 mTECs 的亚型(统称为拟态细胞)共同采用了整个机体的发育程序,以表达生物学上一致的 PTAs 组。在此,我们回顾了拟态细胞的主要方面,特别是它们与分子、细胞、发育和进化生物学的大背景之间的关系。我们强调作为拟态细胞关键调控因子的品系界定转录因子,并推测还有哪些因素(包括 Aire 和 mTEC 的染色质潜能)允许拟态细胞分化和发挥功能。最后,我们将探讨拟态细胞不仅能为我们提供有关胸腺的知识,还能为我们提供有关其他组织的知识。
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引用次数: 0
Transcription Factor Dynamics: One Molecule at a Time. 转录因子动力学:一次一个分子。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2023-10-16 Epub Date: 2023-08-04 DOI: 10.1146/annurev-cellbio-022823-013847
Kaustubh Wagh, Diana A Stavreva, Arpita Upadhyaya, Gordon L Hager

Cells must tightly regulate their gene expression programs and yet rapidly respond to acute biochemical and biophysical cues within their environment. This information is transmitted to the nucleus through various signaling cascades, culminating in the activation or repression of target genes. Transcription factors (TFs) are key mediators of these signals, binding to specific regulatory elements within chromatin. While live-cell imaging has conclusively proven that TF-chromatin interactions are highly dynamic, how such transient interactions can have long-term impacts on developmental trajectories and disease progression is still largely unclear. In this review, we summarize our current understanding of the dynamic nature of TF functions, starting with a historical overview of early live-cell experiments. We highlight key factors that govern TF dynamics and how TF dynamics, in turn, affect downstream transcriptional bursting. Finally, we conclude with open challenges and emerging technologies that will further our understanding of transcriptional regulation.

细胞必须严格调节其基因表达程序,同时对环境中的急性生化和生物物理线索做出快速反应。这些信息通过各种信号级联传递到细胞核,最终激活或抑制靶基因。转录因子(TF)是这些信号的关键介质,与染色质内的特定调节元件结合。虽然活细胞成像已经最终证明TF-染色质相互作用是高度动态的,但这种短暂的相互作用如何对发育轨迹和疾病进展产生长期影响在很大程度上仍不清楚。在这篇综述中,我们总结了我们目前对TF功能动态性质的理解,从早期活细胞实验的历史概述开始。我们强调了控制TF动力学的关键因素,以及TF动力学如何反过来影响下游转录爆发。最后,我们总结了开放的挑战和新兴的技术,这些技术将进一步加深我们对转录调控的理解。
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引用次数: 0
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Annual review of cell and developmental biology
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