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Physiological Functions of Intracellular Protein Degradation. 细胞内蛋白质降解的生理功能。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-05-19 DOI: 10.1146/annurev-cellbio-120420-091943
E. McShane, M. Selbach
While cellular proteins were initially thought to be stable, research over the last decades has firmly established that intracellular protein degradation is an active and highly regulated process: Lysosomal, proteasomal, and mitochondrial degradation systems were identified and found to be involved in a staggering number of biological functions. Here, we provide a global overview of the diverse roles of cellular protein degradation using seven categories: homeostasis, regulation, quality control, stoichiometry control, proteome remodeling, immune surveillance, and baseline turnover. Using selected examples, we outline how proteins are degraded and why this is functionally relevant. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
虽然细胞蛋白质最初被认为是稳定的,但过去几十年的研究已经坚定地证明,细胞内蛋白质降解是一个活跃且高度调节的过程:溶酶体、蛋白酶体和线粒体降解系统被鉴定并发现参与了数量惊人的生物功能。在这里,我们使用七个类别对细胞蛋白质降解的不同作用进行了全面概述:稳态、调节、质量控制、化学计量控制、蛋白质组重塑、免疫监测和基线周转。使用选定的例子,我们概述了蛋白质是如何降解的,以及为什么这在功能上是相关的。《细胞与发育生物学年度评论》第38卷预计最终在线出版日期为2022年10月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 3
Mechanochemical Principles of Spatial and Temporal Patterns in Cells and Tissues. 细胞和组织时空模式的机械化学原理。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-05-13 DOI: 10.1146/annurev-cellbio-120420-095337
Anaïs Bailles, E. Gehrels, T. Lecuit
Patterns are ubiquitous in living systems and underlie the dynamic organization of cells, tissues, and embryos. Mathematical frameworks have been devised to account for the self-organization of biological patterns, most famously the Turing framework. Patterns can be defined in space, for example, to form stripes; in time, such as during oscillations; or both, to form traveling waves. The formation of these patterns can have different origins: purely chemical, purely mechanical, or a combination of the two. Beyond the variety of molecular implementations of such patterns, we emphasize the unitary principles associated with them, across scales in space and time, within a general mechanochemical framework. We illustrate where such mechanisms of pattern formation arise in biological systems from cellular to tissue scales, with an emphasis on morphogenesis. Our goal is to convey a picture of pattern formation that draws attention to the principles rather than solely specific molecular mechanisms. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
模式在生命系统中无处不在,是细胞、组织和胚胎动态组织的基础。已经设计了数学框架来解释生物模式的自组织,最著名的是图灵框架。图案可以在空间中定义,例如,形成条纹;在时间上,例如在振荡期间;以形成行波。这些图案的形成可能有不同的起源:纯粹的化学,纯粹的机械,或者两者的结合。除了这种模式的各种分子实现之外,我们强调在一般的机械化学框架内,在空间和时间尺度上与它们相关的统一原理。我们展示了从细胞到组织尺度的生物系统中这种模式形成机制的产生,重点是形态发生。我们的目标是传达一幅模式形成的画面,吸引人们对原理的关注,而不仅仅是特定的分子机制。《细胞与发育生物学年度评论》第38卷预计最终在线出版日期为2022年10月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 21
Motor Cooperation During Mitosis and Ciliogenesis. 有丝分裂和脊柱侧弯发生过程中的运动配合。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-05-05 DOI: 10.1146/annurev-cellbio-121420-100107
G. Ou, J. Scholey
Cilia and mitotic spindles are microtubule (MT)-based, macromolecular machines that consecutively assemble and disassemble during interphase and M phase of the cell cycle, respectively, and play fundamental roles in how eukaryotic cells swim through a fluid, sense their environment, and divide to reproduce themselves. The formation and function of these structures depend on several types of cytoskeletal motors, notably MT-based kinesins and dyneins, supplemented by actin-based myosins, which may function independently or collaboratively during specific steps in the pathway of mitosis or ciliogenesis. System-specific differences in these pathways occur because, instead of conforming to a simple one motor-one function rule, ciliary and mitotic motors can be deployed differently by different cell types. This reflects the well-known influence of natural selection on basic molecular processes, creating diversity at subcellular scales. Here we review our current understanding of motor function and cooperation during the assembly-disassembly, maintenance, and functions of cilia and mitotic spindles. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
纤毛和有丝分裂纺锤体是基于微管(MT)的大分子机器,分别在细胞周期的间期和M期连续组装和拆卸,并在真核细胞如何在液体中游动、感知环境和分裂以自我繁殖中发挥基本作用。这些结构的形成和功能取决于几种类型的细胞骨架马达,特别是基于MT的驱动蛋白和动力蛋白,辅以基于肌动蛋白的肌球蛋白,它们可能在有丝分裂或纤毛形成途径的特定步骤中独立或协同发挥作用。这些途径的系统特异性差异是因为不同的细胞类型可以不同地部署纤毛和有丝分裂运动,而不是遵循简单的单运动单功能规则。这反映了众所周知的自然选择对基本分子过程的影响,在亚细胞尺度上创造了多样性。在这里,我们回顾了我们目前对纤毛和有丝分裂纺锤体的组装、拆卸、维护和功能过程中的运动功能和合作的理解。《细胞与发育生物学年度评论》第38卷预计最终在线出版日期为2022年10月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 6
The Plant Anaphase-Promoting Complex/Cyclosome. 植物后期促进复合体/环小体。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-04-08 DOI: 10.1146/annurev-cellbio-120420-092421
Alex Willems, L. De Veylder
The anaphase-promoting complex/cyclosome (APC/C) represents a large multisubunit E3-ubiquitin ligase complex that controls the unidirectional progression through the cell cycle by the ubiquitination of specific target proteins, marking them for proteasomal destruction. Although the APC/C's role is largely conserved among eukaryotes, its subunit composition and target spectrum appear to be species specific. In this review, we focus on the plant APC/C complex, whose activity correlates with different developmental processes, including polyploidization and gametogenesis. After an introduction into proteolytic control by ubiquitination, we discuss the composition of the plant APC/C and the essential nature of its core subunits for plant development. Subsequently, we describe the APC/C activator subunits and interactors, most being plant specific. Finally, we provide a comprehensive list of confirmed and suspected plant APC/C target proteins. Identification of growth-related targets might offer opportunities to increase crop yield and resilience of plants to climate change by manipulating APC/C activity. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
后期促进复合体/环体(APC/C)是一个大的多亚基e3泛素连接酶复合体,通过泛素化特定靶蛋白来控制细胞周期的单向进展,标记它们进行蛋白酶体破坏。尽管APC/C在真核生物中的作用在很大程度上是保守的,但其亚基组成和靶谱似乎具有物种特异性。本文综述了植物APC/C复合体的研究进展,该复合体的活性与植物多倍体和配子体的发育过程有关。在介绍了泛素化对蛋白质水解的控制后,我们讨论了植物APC/C的组成及其核心亚基在植物发育中的本质。随后,我们描述了APC/C激活子亚基和相互作用,大多数是植物特异性的。最后,我们提供了一个完整的已确认和疑似植物APC/C靶蛋白列表。确定与生长相关的目标可能为通过操纵APC/C活性来提高作物产量和植物对气候变化的适应能力提供机会。《细胞与发育生物学年度评论》第38卷的最终在线出版日期预计为2022年10月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 8
A Tale of Three Systems: Toward a Neuroimmunoendocrine Model of Obesity. 三个系统的故事:肥胖症的神经免疫内分泌模型。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-10-06 DOI: 10.1146/annurev-cellbio-120319-114106
Conan J O O'Brien, Emma R Haberman, Ana I Domingos

The prevalence of obesity is on the rise. What was once considered a simple disease of energy imbalance is now recognized as a complex condition perpetuated by neuro- and immunopathologies. In this review, we summarize the current knowledge of the neuroimmunoendocrine mechanisms underlying obesity. We examine the pleiotropic effects of leptin action in addition to its established role in the modulation of appetite, and we discuss the neural circuitry mediating leptin action and how this is altered with obesity, both centrally (leptin resistance) and in adipose tissues (sympathetic neuropathy). Finally, we dissect the numerous causal and consequential roles of adipose tissue macrophages in obesity and highlight recent key studies demonstrating their direct role in organismal energy homeostasis.

肥胖的流行率正在上升。曾经被认为是一种简单的能量失衡疾病,现在被认为是一种由神经和免疫病理引起的复杂疾病。在这篇综述中,我们总结了目前关于肥胖的神经免疫内分泌机制的知识。除了瘦素在食欲调节中的作用外,我们还研究了瘦素作用的多效性,并讨论了介导瘦素作用的神经回路,以及它是如何随着肥胖而改变的,包括中枢(瘦素抵抗)和脂肪组织(交感神经病变)。最后,我们剖析了脂肪组织巨噬细胞在肥胖中的众多因果和间接作用,并重点介绍了最近的关键研究,证明了它们在机体能量稳态中的直接作用。
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引用次数: 10
A New Infectious Unit: Extracellular Vesicles Carrying Virus Populations. 一种新的感染单位:携带病毒群的细胞外囊泡。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-10-06 Epub Date: 2021-07-16 DOI: 10.1146/annurev-cellbio-040621-032416
Adeline Kerviel, Mengyang Zhang, Nihal Altan-Bonnet

Viral egress and transmission have long been described to take place through single free virus particles. However, viruses can also shed into the environment and transmit as populations clustered inside extracellular vesicles (EVs), a process we had first called vesicle-mediated en bloc transmission. These membrane-cloaked virus clusters can originate from a variety of cellular organelles including autophagosomes, plasma membrane, and multivesicular bodies. Their viral cargo can be multiples of nonenveloped or enveloped virus particles or even naked infectious genomes, but egress is always nonlytic, with the cell remaining intact. Here we put forth the thesis that EV-cloaked viral clusters are a distinct form of infectious unit as compared to free single viruses (nonenveloped or enveloped) or even free virus aggregates. We discuss how efficient and prevalent these infectious EVs are in the context of virus-associated diseases and highlight the importance of their proper detection and disinfection for public health.

长期以来,人们一直认为病毒的输出和传播是通过单个游离病毒颗粒进行的。然而,病毒也可以通过聚集在细胞外囊泡(EVs)内的群体传播进入环境,我们最初将这一过程称为囊泡介导的整体传播。这些被膜覆盖的病毒簇可以起源于多种细胞器,包括自噬体、质膜和多泡体。它们的病毒货物可以是非包膜或包膜病毒颗粒的倍数,甚至是裸露的感染性基因组,但出口总是非裂解性的,细胞保持完整。在这里,我们提出了一个论点,即与自由的单个病毒(非包膜或包膜)甚至自由的病毒聚集体相比,ev隐藏的病毒簇是一种独特的感染单位形式。我们讨论了这些传染性ev在病毒相关疾病背景下的效率和流行程度,并强调了对其进行适当检测和消毒对公共卫生的重要性。
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引用次数: 31
Components and Mechanisms of Nuclear Mechanotransduction. 核机械转导的组成和机制。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-10-06 Epub Date: 2021-07-02 DOI: 10.1146/annurev-cellbio-120319-030049
Philipp Niethammer

The cell nucleus is best known as the container of the genome. Its envelope provides a barrier for passive macromolecule diffusion, which enhances the control of gene expression. As its largest and stiffest organelle, the nucleus also defines the minimal space requirements of a cell. Internal or external pressures that deform a cell to its physical limits cause a corresponding nuclear deformation. Evidence is consolidating that the nucleus, in addition to its genetic functions, serves as a physical sensing device for critical cell body deformation. Nuclear mechanotransduction allows cells to adapt their acute behaviors, mechanical stability, paracrine signaling, and fate to their physical surroundings. This review summarizes the basic chemical and mechanical properties of nuclear components, and how these properties are thought to be utilized for mechanosensing.

细胞核被认为是基因组的容器。其包膜为大分子的被动扩散提供了屏障,增强了对基因表达的控制。细胞核作为细胞中最大、最坚硬的细胞器,也决定了细胞对空间的最小要求。使细胞变形到其物理极限的内部或外部压力会引起相应的核变形。越来越多的证据表明,细胞核除了具有遗传功能外,还充当关键细胞体变形的物理传感装置。核机械转导允许细胞调整其急性行为、机械稳定性、旁分泌信号和命运以适应其物理环境。本文综述了核成分的基本化学和力学性质,以及这些性质如何被认为用于机械传感。
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引用次数: 18
Cell Biology of Canonical Wnt Signaling. 典型Wnt信号传导的细胞生物学研究
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-10-06 Epub Date: 2021-07-01 DOI: 10.1146/annurev-cellbio-120319-023657
Lauren V Albrecht, Nydia Tejeda-Muñoz, Edward M De Robertis

Wnt signaling has multiple functions beyond the transcriptional effects of β-catenin stabilization. We review recent investigations that uncover new cell physiological effects through the regulation of Wnt receptor endocytosis, Wnt-induced stabilization of proteins (Wnt-STOP), macropinocytosis, increase in lysosomal activity, and metabolic changes. Many of these growth-promoting effects of canonical Wnt occur within minutes and are independent of new protein synthesis. A key element is the sequestration of glycogen synthase kinase 3 (GSK3) inside multivesicular bodies and lysosomes. Twenty percent of human proteins contain consecutive GSK3 phosphorylation motifs, which in the absence of Wnt can form phosphodegrons for polyubiquitination and proteasomal degradation. Wnt signaling by either the pharmacological inhibition of GSK3 or the loss of tumor-suppressor proteins, such as adenomatous polyposis coli (APC) and Axin1, increases lysosomal acidification, anabolic metabolites, and macropinocytosis, which is normally repressed by the GSK3-Axin1-APC destruction complex. The combination of these cell physiological effects drives cell growth.

除了β-catenin稳定的转录作用外,Wnt信号还具有多种功能。我们回顾了最近的研究,通过调节Wnt受体内吞作用、Wnt诱导的蛋白质稳定(Wnt- stop)、巨量胞饮、溶酶体活性增加和代谢变化,揭示了新的细胞生理效应。典型Wnt的许多这些促进生长的作用在几分钟内发生,并且独立于新的蛋白质合成。其中一个关键因素是糖原合成酶激酶3 (GSK3)在多泡体和溶酶体中的隔离。20%的人类蛋白质含有连续的GSK3磷酸化基序,在缺乏Wnt的情况下,这些基序可以形成磷素,用于多泛素化和蛋白酶体降解。Wnt信号通过GSK3的药理学抑制或肿瘤抑制蛋白(如大肠腺瘤性息肉病(APC)和Axin1)的缺失,增加溶酶体酸化、合成代谢代谢物和巨噬细胞增多,而这些通常由GSK3-Axin1-APC破坏复合体抑制。这些细胞生理作用的结合驱动细胞生长。
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引用次数: 51
The Genomics and Cell Biology of Host-Beneficial Intracellular Infections. 宿主有益细胞内感染的基因组学和细胞生物学。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-10-06 Epub Date: 2021-07-09 DOI: 10.1146/annurev-cellbio-120219-024122
John P McCutcheon

Microbes gain access to eukaryotic cells as food for bacteria-grazing protists, for host protection by microbe-killing immune cells, or for microbial benefit when pathogens enter host cells to replicate. But microbes can also gain access to a host cell and become an important-often required-beneficial partner. The oldest beneficial microbial infections are the ancient eukaryotic organelles now called the mitochondrion and plastid. But numerous other host-beneficial intracellular infections occur throughout eukaryotes. Here I review the genomics and cell biology of these interactions with a focus on intracellular bacteria. The genomes of host-beneficial intracellular bacteria have features that span a previously unfilled gap between pathogens and organelles. Host cell adaptations to allow the intracellular persistence of beneficial bacteria are found along with evidence for the microbial manipulation of host cells, but the cellular mechanisms of beneficial bacterial infections are not well understood.

微生物可以进入真核细胞,作为食菌原生生物的食物,通过杀死微生物的免疫细胞保护宿主,或者当病原体进入宿主细胞进行复制时微生物受益。但是微生物也可以进入宿主细胞,成为一个重要的——通常是必需的——有益的伙伴。最古老的有益微生物感染是古老的真核细胞器,现在称为线粒体和质体。但真核生物中还会发生许多其他对宿主有益的细胞内感染。在这里,我回顾基因组学和细胞生物学的这些相互作用的重点是胞内细菌。对宿主有益的细胞内细菌的基因组具有跨越病原体和细胞器之间先前未填补的空白的特征。宿主细胞适应使有益细菌在细胞内持续存在,同时也发现了微生物操纵宿主细胞的证据,但有益细菌感染的细胞机制尚不清楚。
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引用次数: 14
Mechanical Patterning in Animal Morphogenesis. 动物形态发生中的机械模式。
IF 11.3 1区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-10-06 Epub Date: 2021-07-09 DOI: 10.1146/annurev-cellbio-120319-030931
Yonit Maroudas-Sacks, Kinneret Keren

Morphogenesis is one of the most remarkable examples of biological pattern formation. Despite substantial progress in the field, we still do not understand the organizational principles responsible for the robust convergence of the morphogenesis process across scales to form viable organisms under variable conditions. Achieving large-scale coordination requires feedback between mechanical and biochemical processes, spanning all levels of organization and relating the emerging patterns with the mechanisms driving their formation. In this review, we highlight the role of mechanics in the patterning process, emphasizing the active and synergistic manner in which mechanical processes participate in developmental patterning rather than merely following a program set by biochemical signals. We discuss the value of applying a coarse-grained approach that considers the large-scale dynamics and feedback and complements the reductionist approach focused on molecular detail. A central challenge in this approach is identifying relevant coarse-grained variables and developing effective theories that can serve as a basis for an integrated framework toward understanding this remarkable pattern-formation process.

形态发生是生物模式形成最显著的例子之一。尽管在该领域取得了实质性进展,但我们仍然不了解组织原理,这些组织原理负责跨尺度的形态发生过程的强大收敛,从而在可变条件下形成可存活的生物体。实现大规模协调需要机械和生化过程之间的反馈,跨越组织的所有层面,并将新兴模式与驱动其形成的机制联系起来。在这篇综述中,我们强调力学在模式形成过程中的作用,强调机械过程参与发育模式的积极和协同方式,而不仅仅是遵循生化信号设定的程序。我们讨论了应用考虑大规模动力学和反馈的粗粒度方法的价值,并补充了专注于分子细节的还原论方法。这种方法的核心挑战是确定相关的粗粒度变量,并开发有效的理论,这些理论可以作为理解这一非凡模式形成过程的集成框架的基础。
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引用次数: 11
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Annual review of cell and developmental biology
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