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Biogenesis and Regulatory Roles of Circular RNAs. 环状RNA的生物发生和调控作用。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2022-10-06 Epub Date: 2022-05-24 DOI: 10.1146/annurev-cellbio-120420-125117
Li Yang, Jeremy E Wilusz, Ling-Ling Chen

Covalently closed, single-stranded circular RNAs can be produced from viral RNA genomes as well as from the processing of cellular housekeeping noncoding RNAs and precursor messenger RNAs. Recent transcriptomic studies have surprisingly uncovered that many protein-coding genes can be subjected to backsplicing, leading to widespread expression of a specific type of circular RNAs (circRNAs) in eukaryotic cells. Here, we discuss experimental strategies used to discover and characterize diverse circRNAs at both the genome and individual gene scales. We further highlight the current understanding of how circRNAs are generated and how the mature transcripts function. Some circRNAs act as noncoding RNAs to impact gene regulation by serving as decoys or competitors for microRNAs and proteins. Others form extensive networks of ribonucleoprotein complexes or encode functional peptides that are translated in response to certain cellular stresses. Overall, circRNAs have emerged as an important class of RNAmolecules in gene expression regulation that impact many physiological processes, including early development, immune responses, neurogenesis, and tumorigenesis.

共价封闭的单链环状RNA可以从病毒RNA基因组以及细胞内务非编码RNA和前体信使RNA的加工中产生。最近的转录组学研究令人惊讶地发现,许多蛋白质编码基因可以进行反转录,导致一种特定类型的环状RNA(circRNA)在真核细胞中广泛表达。在这里,我们讨论了用于在基因组和个体基因尺度上发现和表征不同circRNA的实验策略。我们进一步强调了目前对circRNA如何产生以及成熟转录物如何发挥作用的理解。一些circRNA作为非编码RNA,通过充当微小RNA和蛋白质的诱饵或竞争对手来影响基因调控。另一些则形成广泛的核糖核蛋白复合物网络,或编码响应某些细胞应激而翻译的功能肽。总的来说,circRNA已成为基因表达调控中的一类重要RNA分子,影响许多生理过程,包括早期发育、免疫反应、神经发生和肿瘤发生。
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引用次数: 50
Tissue Homeostasis and Non-Homeostasis: From Cell Life Cycles to Organ States. 组织稳态与非稳态:从细胞生命周期到器官状态。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2022-10-06 DOI: 10.1146/annurev-cellbio-120420-114855
Lucy Erin O'Brien

Although tissue homeostasis-the steady state-implies stability, our organs are in a state of continual, large-scale cellular flux. This flux underpins an organ's ability to homeostatically renew, to non-homeostatically resize upon altered functional demand, and to return to homeostasis after resizing or injury-in other words, to be dynamic. Here, I examine the basic unit of organ-scale cell dynamics: the cellular life cycle of birth, differentiation, and death. Focusing on epithelial organs, I discuss how spatial patterns and temporal kinetics of life cycle stages depend upon lineage organization and tissue architecture. I review how signaling between stages coordinates life cycle dynamics to enforce homeostasis, and I highlight how particular stages are transiently unbalanced to drive organ resizing or repair. Finally, I offer that considering organs as a collective of not cells but rather cell life cycles provides a powerful vantage for deciphering homeostatic and non-homeostatic tissue states.

虽然组织内稳态——稳定状态——意味着稳定,但我们的器官处于持续的、大规模的细胞流动状态。这种流动支撑着器官的内稳态更新能力、在功能需求改变时进行非内稳态调整的能力,以及在调整或损伤后恢复内稳态的能力——换句话说,是动态的。在这里,我研究了器官尺度细胞动力学的基本单位:细胞的出生、分化和死亡的生命周期。聚焦于上皮器官,我讨论了生命周期阶段的空间模式和时间动力学如何依赖于谱系组织和组织结构。我回顾了阶段之间的信号是如何协调生命周期动态以实现体内平衡的,并强调了特定阶段是如何短暂不平衡以驱动器官调整或修复的。最后,我提出,将器官视为细胞而不是细胞生命周期的集体,为破译体内平衡和非体内平衡的组织状态提供了强大的优势。
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引用次数: 2
Neurobiology, Stem Cell Biology, and Immunology: An Emerging Triad for Understanding Tissue Homeostasis and Repair. 神经生物学、干细胞生物学和免疫学:了解组织稳态和修复的新兴三位一体。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2022-10-06 DOI: 10.1146/annurev-cellbio-120320-032429
Emily Scott-Solomon, Ya-Chieh Hsu

The peripheral nervous system (PNS) endows animals with the remarkable ability to sense and respond to a dynamic world. Emerging evidence shows the PNS also participates in tissue homeostasis and repair by integrating local changes with organismal and environmental changes. Here, we provide an in-depth summary of findings delineating the diverse roles of peripheral nerves in modulating stem cell behaviors and immune responses under steady-state conditions and in response to injury and duress, with a specific focus on the skin and the hematopoietic system. These examples showcase how elucidating neuro-stem cell and neuro-immune cell interactions provides a conceptual framework that connects tissue biology and local immunity with systemic bodily changes to meet varying demands. They also demonstrate how changes in these interactions can manifest in stress, aging, cancer, and inflammation, as well as how these findings can be harnessed to guide the development of new therapeutics.

外周神经系统赋予动物感知和响应动态世界的非凡能力。新出现的证据表明,PNS还通过整合局部变化与组织和环境变化来参与组织稳态和修复。在此,我们深入总结了外周神经在稳态条件下以及对损伤和胁迫的反应中调节干细胞行为和免疫反应的不同作用,特别关注皮肤和造血系统。这些例子展示了阐明神经干细胞和神经免疫细胞的相互作用如何提供一个概念框架,将组织生物学和局部免疫与全身身体变化联系起来,以满足不同的需求。他们还展示了这些相互作用的变化如何在压力、衰老、癌症和炎症中表现出来,以及如何利用这些发现来指导新疗法的开发。
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引用次数: 0
Physiological Functions of Intracellular Protein Degradation. 细胞内蛋白质降解的生理功能。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2022-05-19 DOI: 10.1146/annurev-cellbio-120420-091943
E. McShane, M. Selbach
While cellular proteins were initially thought to be stable, research over the last decades has firmly established that intracellular protein degradation is an active and highly regulated process: Lysosomal, proteasomal, and mitochondrial degradation systems were identified and found to be involved in a staggering number of biological functions. Here, we provide a global overview of the diverse roles of cellular protein degradation using seven categories: homeostasis, regulation, quality control, stoichiometry control, proteome remodeling, immune surveillance, and baseline turnover. Using selected examples, we outline how proteins are degraded and why this is functionally relevant. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
虽然细胞蛋白质最初被认为是稳定的,但过去几十年的研究已经坚定地证明,细胞内蛋白质降解是一个活跃且高度调节的过程:溶酶体、蛋白酶体和线粒体降解系统被鉴定并发现参与了数量惊人的生物功能。在这里,我们使用七个类别对细胞蛋白质降解的不同作用进行了全面概述:稳态、调节、质量控制、化学计量控制、蛋白质组重塑、免疫监测和基线周转。使用选定的例子,我们概述了蛋白质是如何降解的,以及为什么这在功能上是相关的。《细胞与发育生物学年度评论》第38卷预计最终在线出版日期为2022年10月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 3
Mechanochemical Principles of Spatial and Temporal Patterns in Cells and Tissues. 细胞和组织时空模式的机械化学原理。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2022-05-13 DOI: 10.1146/annurev-cellbio-120420-095337
Anaïs Bailles, E. Gehrels, T. Lecuit
Patterns are ubiquitous in living systems and underlie the dynamic organization of cells, tissues, and embryos. Mathematical frameworks have been devised to account for the self-organization of biological patterns, most famously the Turing framework. Patterns can be defined in space, for example, to form stripes; in time, such as during oscillations; or both, to form traveling waves. The formation of these patterns can have different origins: purely chemical, purely mechanical, or a combination of the two. Beyond the variety of molecular implementations of such patterns, we emphasize the unitary principles associated with them, across scales in space and time, within a general mechanochemical framework. We illustrate where such mechanisms of pattern formation arise in biological systems from cellular to tissue scales, with an emphasis on morphogenesis. Our goal is to convey a picture of pattern formation that draws attention to the principles rather than solely specific molecular mechanisms. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
模式在生命系统中无处不在,是细胞、组织和胚胎动态组织的基础。已经设计了数学框架来解释生物模式的自组织,最著名的是图灵框架。图案可以在空间中定义,例如,形成条纹;在时间上,例如在振荡期间;以形成行波。这些图案的形成可能有不同的起源:纯粹的化学,纯粹的机械,或者两者的结合。除了这种模式的各种分子实现之外,我们强调在一般的机械化学框架内,在空间和时间尺度上与它们相关的统一原理。我们展示了从细胞到组织尺度的生物系统中这种模式形成机制的产生,重点是形态发生。我们的目标是传达一幅模式形成的画面,吸引人们对原理的关注,而不仅仅是特定的分子机制。《细胞与发育生物学年度评论》第38卷预计最终在线出版日期为2022年10月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 21
Motor Cooperation During Mitosis and Ciliogenesis. 有丝分裂和脊柱侧弯发生过程中的运动配合。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2022-05-05 DOI: 10.1146/annurev-cellbio-121420-100107
G. Ou, J. Scholey
Cilia and mitotic spindles are microtubule (MT)-based, macromolecular machines that consecutively assemble and disassemble during interphase and M phase of the cell cycle, respectively, and play fundamental roles in how eukaryotic cells swim through a fluid, sense their environment, and divide to reproduce themselves. The formation and function of these structures depend on several types of cytoskeletal motors, notably MT-based kinesins and dyneins, supplemented by actin-based myosins, which may function independently or collaboratively during specific steps in the pathway of mitosis or ciliogenesis. System-specific differences in these pathways occur because, instead of conforming to a simple one motor-one function rule, ciliary and mitotic motors can be deployed differently by different cell types. This reflects the well-known influence of natural selection on basic molecular processes, creating diversity at subcellular scales. Here we review our current understanding of motor function and cooperation during the assembly-disassembly, maintenance, and functions of cilia and mitotic spindles. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
纤毛和有丝分裂纺锤体是基于微管(MT)的大分子机器,分别在细胞周期的间期和M期连续组装和拆卸,并在真核细胞如何在液体中游动、感知环境和分裂以自我繁殖中发挥基本作用。这些结构的形成和功能取决于几种类型的细胞骨架马达,特别是基于MT的驱动蛋白和动力蛋白,辅以基于肌动蛋白的肌球蛋白,它们可能在有丝分裂或纤毛形成途径的特定步骤中独立或协同发挥作用。这些途径的系统特异性差异是因为不同的细胞类型可以不同地部署纤毛和有丝分裂运动,而不是遵循简单的单运动单功能规则。这反映了众所周知的自然选择对基本分子过程的影响,在亚细胞尺度上创造了多样性。在这里,我们回顾了我们目前对纤毛和有丝分裂纺锤体的组装、拆卸、维护和功能过程中的运动功能和合作的理解。《细胞与发育生物学年度评论》第38卷预计最终在线出版日期为2022年10月。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 6
The Plant Anaphase-Promoting Complex/Cyclosome. 植物后期促进复合体/环小体。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2022-04-08 DOI: 10.1146/annurev-cellbio-120420-092421
Alex Willems, L. De Veylder
The anaphase-promoting complex/cyclosome (APC/C) represents a large multisubunit E3-ubiquitin ligase complex that controls the unidirectional progression through the cell cycle by the ubiquitination of specific target proteins, marking them for proteasomal destruction. Although the APC/C's role is largely conserved among eukaryotes, its subunit composition and target spectrum appear to be species specific. In this review, we focus on the plant APC/C complex, whose activity correlates with different developmental processes, including polyploidization and gametogenesis. After an introduction into proteolytic control by ubiquitination, we discuss the composition of the plant APC/C and the essential nature of its core subunits for plant development. Subsequently, we describe the APC/C activator subunits and interactors, most being plant specific. Finally, we provide a comprehensive list of confirmed and suspected plant APC/C target proteins. Identification of growth-related targets might offer opportunities to increase crop yield and resilience of plants to climate change by manipulating APC/C activity. Expected final online publication date for the Annual Review of Cell and Developmental Biology Volume 38 is October 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
后期促进复合体/环体(APC/C)是一个大的多亚基e3泛素连接酶复合体,通过泛素化特定靶蛋白来控制细胞周期的单向进展,标记它们进行蛋白酶体破坏。尽管APC/C在真核生物中的作用在很大程度上是保守的,但其亚基组成和靶谱似乎具有物种特异性。本文综述了植物APC/C复合体的研究进展,该复合体的活性与植物多倍体和配子体的发育过程有关。在介绍了泛素化对蛋白质水解的控制后,我们讨论了植物APC/C的组成及其核心亚基在植物发育中的本质。随后,我们描述了APC/C激活子亚基和相互作用,大多数是植物特异性的。最后,我们提供了一个完整的已确认和疑似植物APC/C靶蛋白列表。确定与生长相关的目标可能为通过操纵APC/C活性来提高作物产量和植物对气候变化的适应能力提供机会。《细胞与发育生物学年度评论》第38卷的最终在线出版日期预计为2022年10月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 8
A Tale of Three Systems: Toward a Neuroimmunoendocrine Model of Obesity. 三个系统的故事:建立肥胖症的神经免疫内分泌模型。
IF 11.4 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2021-10-06 DOI: 10.1146/annurev-cellbio-120319-114106
Conan J O O'Brien, Emma R Haberman, Ana I Domingos

The prevalence of obesity is on the rise. What was once considered a simple disease of energy imbalance is now recognized as a complex condition perpetuated by neuro- and immunopathologies. In this review, we summarize the current knowledge of the neuroimmunoendocrine mechanisms underlying obesity. We examine the pleiotropic effects of leptin action in addition to its established role in the modulation of appetite, and we discuss the neural circuitry mediating leptin action and how this is altered with obesity, both centrally (leptin resistance) and in adipose tissues (sympathetic neuropathy). Finally, we dissect the numerous causal and consequential roles of adipose tissue macrophages in obesity and highlight recent key studies demonstrating their direct role in organismal energy homeostasis.

肥胖症的发病率呈上升趋势。肥胖症曾被认为是一种简单的能量失衡疾病,但现在却被认为是一种由神经和免疫病理导致的复杂疾病。在这篇综述中,我们总结了目前有关肥胖症神经免疫内分泌机制的知识。除了瘦素在调节食欲方面的既定作用外,我们还研究了瘦素作用的多效应,并讨论了介导瘦素作用的神经回路,以及肥胖症如何在中枢(瘦素抵抗)和脂肪组织(交感神经病变)两方面改变瘦素的作用。最后,我们剖析了脂肪组织巨噬细胞在肥胖症中的众多因果作用,并重点介绍了近期证明其在机体能量平衡中直接作用的重要研究。
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引用次数: 0
Self-Organization of Cellular Units. 细胞单位的自组织。
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2021-10-06 DOI: 10.1146/annurev-cellbio-120319-025356
Timothy J Mitchison, Christine M Field

The purpose of this review is to explore self-organizing mechanisms that pattern microtubules (MTs) and spatially organize animal cell cytoplasm, inspired by recent experiments in frog egg extract. We start by reviewing conceptual distinctions between self-organizing and templating mechanisms for subcellular organization. We then discuss self-organizing mechanisms that generate radial MT arrays and cell centers in the absence of centrosomes. These include autocatalytic MT nucleation, transport of minus ends, and nucleation from organelles such as melanosomes and Golgi vesicles that are also dynein cargoes. We then discuss mechanisms that partition the cytoplasm in syncytia, in which multiple nuclei share a common cytoplasm, starting with cytokinesis, when all metazoan cells are transiently syncytial. The cytoplasm of frog eggs is partitioned prior to cytokinesis by two self-organizing modules, protein regulator of cytokinesis 1 (PRC1)-kinesin family member 4A (KIF4A) and chromosome passenger complex (CPC)-KIF20A. Similar modules may partition longer-lasting syncytia, such as early Drosophila embryos. We end by discussing shared mechanisms and principles for the MT-based self-organization of cellular units.

本文以蛙卵提取物为研究对象,探讨微管的自组织机制和空间组织机制。我们首先回顾亚细胞组织的自组织和模板机制之间的概念区别。然后我们讨论了在没有中心体的情况下产生径向MT阵列和细胞中心的自组织机制。这些包括自催化MT成核,负端运输,以及同样是动力蛋白货物的黑素体和高尔基囊泡等细胞器成核。然后,我们讨论了在合胞体中分裂细胞质的机制,在合胞体中,多个细胞核共享一个共同的细胞质,从细胞分裂开始,当所有后生细胞都是短暂合胞体时。蛙卵细胞质在细胞分裂前由两个自组织模块进行分裂,即细胞分裂1蛋白调节因子(PRC1)-激酶家族成员4A (KIF4A)和染色体乘客复合体(CPC)-KIF20A。类似的模块可能分裂出更持久的合胞体,如早期果蝇胚胎。最后,我们讨论了基于mt的细胞单位自组织的共享机制和原则。
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引用次数: 11
Molecular Mechanisms of Sexually Dimorphic Nervous System Patterning in Flies and Worms. 苍蝇和蠕虫性二态神经系统模式化的分子机制
IF 11.3 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2021-10-06 DOI: 10.1146/annurev-cellbio-120319-115237
Stephen F Goodwin, Oliver Hobert

Male and female brains display anatomical and functional differences. Such differences are observed in species across the animal kingdom, including humans, but have been particularly well-studied in two classic animal model systems, the fruit fly Drosophila melanogaster and the nematode Caenorhabditis elegans. Here we summarize recent advances in understanding how the worm and fly brain acquire sexually dimorphic features during development. We highlight the advantages of each system, illustrating how the precise anatomical delineation of sexual dimorphisms in worms has enabled recent analysis into how these dimorphisms become specified during development, and how focusing on sexually dimorphic neurons in the fly has enabled an increasingly detailed understanding of sex-specific behaviors.

雄性和雌性大脑在解剖学和功能上存在差异。这种差异在包括人类在内的动物界所有物种中都能观察到,但在两个经典的动物模型系统--黑腹果蝇和线虫--中的研究尤为深入。在此,我们总结了在了解蠕虫和蝇类大脑如何在发育过程中获得性双态特征方面的最新进展。我们强调了每种系统的优势,说明了对蠕虫性二态性的精确解剖学划分是如何促成了最近对这些二态性如何在发育过程中特定化的分析,以及对果蝇性二态性神经元的关注是如何促成了对性别特异性行为越来越详细的了解。
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引用次数: 0
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Annual review of cell and developmental biology
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