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Models for Decarbonization in the Chemical Industry. 化工行业的脱碳模式。
IF 7.6 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-07-01 Epub Date: 2024-07-03 DOI: 10.1146/annurev-chembioeng-100522-114115
Yuan Yao, Kai Lan, Thomas E Graedel, Narasimha D Rao

Various technologies and strategies have been proposed to decarbonize the chemical industry. Assessing the decarbonization, environmental, and economic implications of these technologies and strategies is critical to identifying pathways to a more sustainable industrial future. This study reviews recent advancements and integration of systems analysis models, including process analysis, material flow analysis, life cycle assessment, techno-economic analysis, and machine learning. These models are categorized based on analytical methods and application scales (i.e., micro-, meso-, and macroscale) for promising decarbonization technologies (e.g., carbon capture, storage, and utilization, biomass feedstock, and electrification) and circular economy strategies. Incorporating forward-looking, data-driven approaches into existing models allows for optimizing complex industrial systems and assessing future impacts. Although advances in industrial ecology-, economic-, and planetary boundary-based modeling support a more holistic systems-level assessment, more efforts are needed to consider impacts on ecosystems. Effective applications of these advanced, integrated models require cross-disciplinary collaborations across chemical engineering, industrial ecology, and economics.

为实现化工行业的脱碳,人们提出了各种技术和战略。评估这些技术和战略对脱碳、环境和经济的影响,对于确定通往更可持续工业未来的道路至关重要。本研究回顾了系统分析模型的最新进展和集成,包括工艺分析、物料流分析、生命周期评估、技术经济分析和机器学习。这些模型根据分析方法和应用规模(即微观、中观和宏观规模)进行分类,适用于有前景的脱碳技术(如碳捕获、储存和利用、生物质原料和电气化)和循环经济战略。将前瞻性的数据驱动方法纳入现有模型,可以优化复杂的工业系统并评估未来的影响。虽然工业生态学、经济学和基于行星边界的建模技术的进步支持更全面的系统级评估,但还需要更多的效果来考虑对生态系统的影响。这些先进的综合模型的有效应用需要化学工程、工业生态学和经济学等学科的跨学科合作。化学与生物分子工程年度综述》第 15 卷的最终在线出版日期预计为 2024 年 6 月。有关修订后的预计日期,请参见 http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 0
Introduction. 介绍。
IF 7.6 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-07-01 DOI: 10.1146/annurev-ch-15-040824-100001
Michael F Doherty, Rachel A Segalman, Ravi S Kane
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引用次数: 0
Reassessing the Standard Chemotaxis Framework for Understanding Biased Migration in Helicobacter pylori. 重新评估理解幽门螺杆菌偏性迁移的标准趋化性框架。
IF 7.6 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-07-01 Epub Date: 2024-07-03 DOI: 10.1146/annurev-chembioeng-100722-114625
Jyot D Antani, Aakansha Shaji, Rachit Gupta, Pushkar P Lele

Helicobacter pylori infections are a major cause of peptic ulcers and gastric cancers. The development of robust inflammation in response to these flagellated, motile bacteria is correlated with poor prognosis. Chemotaxis plays a crucial role in H. pylori colonization, enabling the bacteria to swim toward favorable chemical environments. Unlike the model species of bacterial chemotaxis, Escherichia coli, H. pylori cells possess polar flagella. They run forward by rotating their flagella counterclockwise, whereas backward runs are achieved by rotating their flagella clockwise. We delve into the implications of certain features of the canonical model of chemotaxis on our understanding of biased migration in polarly flagellated bacteria such as H. pylori. In particular, we predict how the translational displacement of H. pylori cells during a backward run could give rise to chemotaxis errors within the canonical framework. Also, H. pylori lack key chemotaxis enzymes found in E. coli, without which sensitive detection of ligands with a wide dynamic range seems unlikely. Despite these problems, H. pylori exhibit robust ability to migrate toward urea-rich sources. We emphasize various unresolved questions regarding the biophysical mechanisms of chemotaxis in H. pylori, shedding light on potential directions for future research. Understanding the intricacies of biased migration in H. pylori could offer valuable insights into how pathogens breach various protective barriers in the human host.

幽门螺杆菌感染是消化性溃疡和胃癌的主要原因。这些鞭毛细菌引起的强烈炎症反应与预后不良有关。趋化性在幽门螺杆菌定植中起着至关重要的作用,使细菌能够向有利的化学环境游泳。与细菌趋化性的模式种大肠杆菌不同,幽门螺杆菌细胞具有极性鞭毛。它们通过逆时针旋转鞭毛向前跑,而通过顺时针旋转鞭毛向后跑。我们深入研究了趋化性规范模型的某些特征对我们对极性鞭毛细菌(如幽门螺杆菌)偏向迁移的理解的影响。特别是,我们预测在向后运行过程中,幽门螺杆菌细胞的平移位移如何在规范框架内引起趋化性错误。此外,幽门螺杆菌缺乏大肠杆菌中发现的关键趋化酶,没有这种酶,对大动态范围配体的敏感检测似乎是不可能的。尽管存在这些问题,幽门螺杆菌仍表现出向富含尿素的来源迁移的强大能力。我们强调了幽门螺杆菌趋化性的生物物理机制中各种尚未解决的问题,为未来的研究指明了方向。了解幽门螺杆菌偏向性迁移的复杂性可以为了解病原体如何破坏人类宿主的各种保护屏障提供有价值的见解。预计《化学与生物分子工程年度评论》第15卷的最终在线出版日期为2024年6月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 0
Will Hydrogen Be a New Natural Gas? Hydrogen Integration in Natural Gas Grids. 氢气会成为新的天然气吗?天然气电网中的氢整合。
IF 7.6 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-07-01 DOI: 10.1146/annurev-chembioeng-100522-110306
Gerald Linke

Hydrogen is similar to natural gas in terms of its physical and chemical properties but does not release carbon dioxide when burnt. This makes hydrogen an energy carrier of great importance in climate policy, especially as an enabler of increasing integration of volatile renewable energy, progressive electrification, and effective emission reductions in the hard-to-decarbonize sectors. Leaving aside the problems of transporting hydrogen as a liquid, technological challenges along the entire supply chain can be considered as solved in principle, as shown in the experimental findings of the Hydrogen Innovation Program of the German Technical and Scientific Association for Gas and Water. By scaling up production and end-use capacities and, most importantly, producing hydrogen in regions with abundant renewable energy, hydrogen and its applications can displace natural gas at affordable prices in the medium term. However, this substitution will take place at different rates in different regions and with different levels of added value, all of which must be understood for hydrogen uptake to be successful.

氢气的物理和化学性质与天然气相似,但燃烧时不会释放二氧化碳。这使得氢气成为气候政策中非常重要的能源载体,尤其是作为增加不稳定可再生能源的整合、逐步电气化以及在难以去碳化的部门有效减排的推动力。撇开氢作为液体运输的问题不谈,正如德国天然气与水技术和科学协会氢创新计划的实验结果所示,整个供应链上的技术挑战原则上都可以被视为已经解决。通过提高生产和终端使用能力,最重要的是在可再生能源丰富的地区生产氢气,氢气及其应用可以在中期内以可承受的价格取代天然气。然而,在不同地区,这种替代将以不同的速度进行,并具有不同程度的附加值,要想成功吸收氢气,就必须了解所有这些因素。
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引用次数: 0
Fluid Ejections in Nature 自然界中的流体喷射
IF 8.4 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-04-26 DOI: 10.1146/annurev-chembioeng-100722-113148
Elio J. Challita, Pankaj Rohilla, M. Saad Bhamla
From microscopic fungi to colossal whales, fluid ejections are universal and intricate phenomena in biology, serving vital functions such as animal excretion, venom spraying, prey hunting, spore dispersal, and plant guttation. This review delves into the complex fluid physics of ejections across various scales, exploring both muscle-powered active systems and passive mechanisms driven by gravity or osmosis. It introduces a framework using dimensionless numbers to delineate transitions from dripping to jetting and elucidate the governing forces. Highlighting the understudied area of complex fluid ejections, this review not only rationalizes the biophysics involved but also uncovers potential engineering applications in soft robotics, additive manufacturing, and drug delivery. By bridging biomechanics, the physics of living systems, and fluid dynamics, this review offers valuable insights into the diverse world of fluid ejections and paves the way for future bioinspired research across the spectrum of life.
从微小的真菌到巨大的鲸鱼,流体喷射是生物界普遍而复杂的现象,具有动物排泄、毒液喷射、猎物捕食、孢子散播和植物内脏排泄等重要功能。这篇综述深入探讨了不同尺度喷射的复杂流体物理学,探讨了肌肉驱动的主动系统和重力或渗透驱动的被动机制。它介绍了一个使用无量纲数字的框架,以划分从滴落到喷射的过渡,并阐明支配力。这篇综述强调了复杂流体喷射这一未被充分研究的领域,不仅合理解释了其中涉及的生物物理学,还揭示了软机器人、增材制造和药物输送领域的潜在工程应用。通过在生物力学、生命系统物理学和流体动力学之间架起桥梁,这篇综述为流体喷射的多样化世界提供了宝贵的见解,并为未来生命领域的生物启发研究铺平了道路。
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引用次数: 0
Biological Upcycling of Plastics Waste 塑料废弃物的生物升级再造
IF 8.4 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-04-15 DOI: 10.1146/annurev-chembioeng-100522-115850
Ross R. Klauer, D. Alex Hansen, Derek Wu, Lummy Maria Oliveira Monteiro, Kevin V. Solomon, Mark A. Blenner
Plastic wastes accumulate in the environment, impacting wildlife and human health and representing a significant pool of inexpensive waste carbon that could form feedstock for the sustainable production of commodity chemicals, monomers, and specialty chemicals. Current mechanical recycling technologies are not economically attractive due to the lower-quality plastics that are produced in each iteration. Thus, the development of a plastics economy requires a solution that can deconstruct plastics and generate value from the deconstruction products. Biological systems can provide such value by allowing for the processing of mixed plastics waste streams via enzymatic specificity and using engineered metabolic pathways to produce upcycling targets. We focus on the use of biological systems for waste plastics deconstruction and upcycling. We highlight documented and predicted mechanisms through which plastics are biologically deconstructed and assimilated and provide examples of upcycled products from biological systems. Additionally, we detail current challenges in the field, including the discovery and development of microorganisms and enzymes for deconstructing non–polyethylene terephthalate plastics, the selection of appropriate target molecules to incentivize development of a plastic bioeconomy, and the selection of microbial chassis for the valorization of deconstruction products.
塑料废弃物在环境中累积,影响野生动物和人类健康,同时也是大量廉价废碳的来源,可作为原料用于商品化学品、单体和特种化学品的可持续生产。由于每次迭代产生的塑料质量较低,目前的机械回收技术在经济上并不具有吸引力。因此,塑料经济的发展需要一种能够解构塑料并从解构产品中产生价值的解决方案。生物系统可以通过酶的特异性处理混合塑料废料流,并利用工程化的代谢途径生产升级再循环目标,从而提供这种价值。我们的重点是利用生物系统进行废塑料解构和升级再循环。我们重点介绍了已记录和预测的塑料生物解构和同化机制,并提供了生物系统升级再循环产品的实例。此外,我们还详细介绍了该领域目前面临的挑战,包括发现和开发用于解构非对苯二甲酸乙二醇酯塑料的微生物和酶,选择适当的目标分子以促进塑料生物经济的发展,以及选择微生物底盘以实现解构产品的价值化。
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引用次数: 0
CRISPR Tools for Engineering Prokaryotic Systems: Recent Advances and New Applications 用于原核系统工程的 CRISPR 工具:最新进展和新应用
IF 8.4 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-04-10 DOI: 10.1146/annurev-chembioeng-100522-114706
Diego Alba Burbano, Cholpisit Kiattisewee, Ava V. Karanjia, Ryan A.L. Cardiff, Ian D. Faulkner, Widianti Sugianto, James M. Carothers
In the past decades, the broad selection of CRISPR-Cas systems has revolutionized biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in a molecular engineering perspective, we recapitulate the different CRISPR components and how they can be designed for specific genetic engineering applications. We first introduce the repertoire of Cas proteins and tethered effectors used to program new biological functions through gene editing and gene regulation. We review current guide RNA (gRNA) design strategies and computational tools and how CRISPR-based genetic circuits can be constructed through regulated gRNA expression. Then, we present recent advances in CRISPR-based biosensing, bioproduction, and biotherapeutics across in vitro and in vivo prokaryotic systems. Finally, we discuss forthcoming applications in prokaryotic CRISPR technology that will transform synthetic biology principles in the near future.
在过去的几十年里,CRISPR-Cas 系统的广泛应用为生物技术带来了革命性的变化,使多种生物的多模式遗传操作成为可能。我们从分子工程的角度出发,概述了 CRISPR 的不同组成部分,以及如何将它们设计用于特定的基因工程应用。我们首先介绍了用于通过基因编辑和基因调控来编程新生物功能的 Cas 蛋白和系留效应器。我们回顾了当前的引导 RNA(gRNA)设计策略和计算工具,以及如何通过调控 gRNA 的表达来构建基于 CRISPR 的基因回路。然后,我们介绍了基于 CRISPR 的生物传感、生物生产和生物治疗在体外和体内原核系统中的最新进展。最后,我们将讨论原核生物 CRISPR 技术即将出现的应用,这些应用将在不久的将来改变合成生物学原理。
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引用次数: 0
Advanced Modeling and Optimization Strategies for Process Synthesis 工艺合成的高级建模和优化策略
IF 8.4 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-04-10 DOI: 10.1146/annurev-chembioeng-100522-112139
Efstratios N. Pistikopoulos, Yuhe Tian
This article provides a systematic review of recent progress in optimization-based process synthesis. First, we discuss multiscale modeling frameworks featuring targeting approaches, phenomena-based modeling, unit operation–based modeling, and hybrid modeling. Next, we present the expanded scope of process synthesis objectives, highlighting the considerations of sustainability and operability to assure cost-competitive production in an increasingly dynamic market with growing environmental awareness. Then, we review advances in optimization algorithms and tools, including emerging machine learning–and quantum computing–assisted approaches. We conclude by summarizing the advances in and perspectives for process synthesis strategies.
本文系统回顾了基于优化的过程合成的最新进展。首先,我们讨论了多尺度建模框架,包括目标方法、基于现象的建模、基于单元操作的建模和混合建模。接下来,我们介绍了工艺合成目标的扩展范围,重点考虑了可持续性和可操作性,以确保在环保意识日益增强的动态市场中,生产成本具有竞争力。然后,我们回顾了优化算法和工具的进展,包括新兴的机器学习和量子计算辅助方法。最后,我们总结了工艺合成策略的进展和前景。
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引用次数: 0
Design of Coiled-Coil Protein Nanostructures for Therapeutics and Drug Delivery 设计用于治疗和给药的盘绕线圈蛋白质纳米结构
IF 8.4 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-04-10 DOI: 10.1146/annurev-chembioeng-100722-122348
Dustin Britton, Jonathan W. Sun, P. Douglas Renfrew, Jin Kim Montclare
Coiled-coil protein motifs have become widely employed in the design of biomaterials. Some of these designs have been studied for use in drug delivery due to the unique ability of coiled-coils to impart stability, oligomerization, and supramolecular assembly. To leverage these properties and improve drug delivery, release, and targeting, a variety of nano- to mesoscale architectures have been adopted. Coiled-coil drug delivery and therapeutics have been developed by using the coiled-coil alone, designing for higher-order assemblies such as fibers and hydrogels, and combining coiled-coil proteins with other biocompatible structures such as lipids and polymers. We review the recent development of these structures and the design criteria used to generate functional proteins of varying sizes and morphologies.
在生物材料的设计中,已广泛采用了盘绕线圈蛋白质图案。由于盘卷蛋白具有独特的稳定性、低聚作用和超分子组装能力,其中一些设计已被研究用于药物输送。为了充分利用这些特性,改善药物的输送、释放和靶向性,人们采用了各种纳米到中尺度的结构。通过单独使用盘绕线圈、设计高阶组装(如纤维和水凝胶)以及将盘绕线圈蛋白质与其他生物相容性结构(如脂质和聚合物)相结合,开发出了盘绕线圈给药和治疗方法。我们回顾了这些结构的最新发展,以及用于生成不同大小和形态的功能性蛋白质的设计标准。
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引用次数: 0
Accelerating Diverse Cell-Based Therapies Through Scalable Design 通过可扩展设计加速多样化的细胞疗法
IF 8.4 2区 工程技术 Q1 CHEMISTRY, APPLIED Pub Date : 2024-04-10 DOI: 10.1146/annurev-chembioeng-100722-121610
Emma L. Peterman, Deon Ploessl, Kate E. Galloway
Augmenting cells with novel, genetically encoded functions will support therapies that expand beyond natural capacity for immune surveillance and tissue regeneration. However, engineering cells at scale with transgenic cargoes remains a challenge in realizing the potential of cell-based therapies. In this review, we introduce a range of applications for engineering primary cells and stem cells for cell-based therapies. We highlight tools and advances that have launched mammalian cell engineering from bioproduction to precision editing of therapeutically relevant cells. Additionally, we examine how transgenesis methods and genetic cargo designs can be tailored for performance. Altogether, we offer a vision for accelerating the translation of innovative cell-based therapies by harnessing diverse cell types, integrating the expanding array of synthetic biology tools, and building cellular tools through advanced genome writing techniques.
增强细胞的新型基因编码功能将支持超越天然免疫监视和组织再生能力的疗法。然而,利用转基因载体进行大规模细胞工程仍是实现细胞疗法潜力的一项挑战。在本综述中,我们将介绍一系列用于细胞疗法的原代细胞和干细胞工程应用。我们重点介绍了哺乳动物细胞工程从生物生产到精准编辑治疗相关细胞的工具和进展。此外,我们还探讨了如何调整转基因方法和基因载体设计以提高性能。总之,我们通过利用不同的细胞类型、整合不断扩大的合成生物学工具阵列,以及通过先进的基因组编写技术构建细胞工具,为加快基于细胞的创新疗法的转化提供了一个愿景。
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引用次数: 0
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Annual review of chemical and biomolecular engineering
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