Pub Date : 2024-11-28DOI: 10.1016/j.aquaculture.2024.741937
Guorui Xing , Yufeng Wang , Ting Chen , Zhiyuan Yao , Jiong Chen , Jinbo Xiong
Biological treatments have been widely applied to remove wastewater nutrients, while single biological treatment is insufficient to achieve desired efficiency. Moving beyond removal of nutrient, equivalent focus on ecological consequences and biotic pollutants (e.g., pathogens) along the decontamination procedures is lacking. Herein, we established an efficient biological treatment system by integrating biofilm, shellfish and Spartina, which efficiently reduced the levels of wastewater nutrients (> 62.7 %) and sediment antibiotics (> 84.6 %) before discharge, with unsatisfied removal of total phosphorus and diversified potential pathogens. Our biological treatments potentiated C storage and ammoxidation process, and mitigated CH4 emission, of which are conjointly governed by the direct effect of nutrient pollutions and the indirect effect of antibiotics. In contrast, denitrification potential in wastewater and sediment was divergent, resulting in an uncertainty on net N2O emission. We identified diverse ammonia-oxidizing bacteria assistors that were candidates for improving ammoxidation. Intriguingly, bacterial biomakers could quantitatively and accurately diagnose wastewater entropy water quality index and sediment multi-nutrient cycling index, with overall 81.9 % and 91.1 % accuracy, respectively. The combined biological treatments can be a double-edged sword between water quality improvement and mitigating pathogenicity. These findings greatly deepen our understanding of the biological and ecological consequences of a biofilm-shellfish-phytoremediation system, and accordingly some strategies are informed for improving decontamination efficiency.
{"title":"Biological and ecological consequences of combined biofilm, shellfish and phytoremediation along a wastewater treatment system from shrimp aquafarm","authors":"Guorui Xing , Yufeng Wang , Ting Chen , Zhiyuan Yao , Jiong Chen , Jinbo Xiong","doi":"10.1016/j.aquaculture.2024.741937","DOIUrl":"10.1016/j.aquaculture.2024.741937","url":null,"abstract":"<div><div>Biological treatments have been widely applied to remove wastewater nutrients, while single biological treatment is insufficient to achieve desired efficiency. Moving beyond removal of nutrient, equivalent focus on ecological consequences and biotic pollutants (e.g., pathogens) along the decontamination procedures is lacking. Herein, we established an efficient biological treatment system by integrating biofilm, shellfish and <em>Spartina</em>, which efficiently reduced the levels of wastewater nutrients (> 62.7 %) and sediment antibiotics (> 84.6 %) before discharge, with unsatisfied removal of total phosphorus and diversified potential pathogens. Our biological treatments potentiated C storage and ammoxidation process, and mitigated CH<sub>4</sub> emission<sub>,</sub> of which are conjointly governed by the direct effect of nutrient pollutions and the indirect effect of antibiotics. In contrast, denitrification potential in wastewater and sediment was divergent, resulting in an uncertainty on net N<sub>2</sub>O emission. We identified diverse ammonia-oxidizing bacteria assistors that were candidates for improving ammoxidation. Intriguingly, bacterial biomakers could quantitatively and accurately diagnose wastewater entropy water quality index and sediment multi-nutrient cycling index, with overall 81.9 % and 91.1 % accuracy, respectively. The combined biological treatments can be a double-edged sword between water quality improvement and mitigating pathogenicity. These findings greatly deepen our understanding of the biological and ecological consequences of a biofilm-shellfish-phytoremediation system, and accordingly some strategies are informed for improving decontamination efficiency.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741937"},"PeriodicalIF":3.9,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744625","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-28DOI: 10.1016/j.aquaculture.2024.741956
Vladimir Radosavljevic, Dimitrije Glisic, Jelena Maksimovic-Zoric, Ksenija Nesic, Bozidar Savic
Between 2018 and 2021, significant die-offs of Prussian carp (Carassius gibelio) occurred in five lakes in eastern, central and northern Serbia. In all cases, Cyvirus cyprinidallo 2, formerly named Cyprinid herpesvirus 2 (CyHV-2) infection was suspected, based on initial diagnostic observations. To determine the cause of these mass mortalities, real-time PCR assays targeting CyHV-2, CyHV-3, and SVCV were conducted. CyHV-2 DNA was detected in the affected populations, while SVCV and CyHV-3 were negative in the assay. The CyHV-2 was also detected in asymptomatic Prussian carp. Sequence analysis of the CyHV-2 DNA polymerase and helicase genes revealed high similarity to previously reported strains from Serbia and other countries. The occurrence of these outbreaks in Prussian carp populations in lakes indicates the probable spread of the virus within freshwater ecosystems in Serbia, potentially impacting the degradation of aquatic habitats.
{"title":"Emergence and persistence of Cyvirus cyprinidallo 2 (CyHV-2) in Prussian carp in Serbian lakes","authors":"Vladimir Radosavljevic, Dimitrije Glisic, Jelena Maksimovic-Zoric, Ksenija Nesic, Bozidar Savic","doi":"10.1016/j.aquaculture.2024.741956","DOIUrl":"10.1016/j.aquaculture.2024.741956","url":null,"abstract":"<div><div>Between 2018 and 2021, significant die-offs of Prussian carp (<em>Carassius gibelio</em>) occurred in five lakes in eastern, central and northern Serbia. In all cases, <em>Cyvirus cyprinidallo 2,</em> formerly named <em>Cyprinid herpesvirus 2</em> (CyHV-2) infection was suspected, based on initial diagnostic observations. To determine the cause of these mass mortalities, real-time PCR assays targeting CyHV-2, CyHV-3, and SVCV were conducted. CyHV-2 DNA was detected in the affected populations, while SVCV and CyHV-3 were negative in the assay. The CyHV-2 was also detected in asymptomatic Prussian carp. Sequence analysis of the CyHV-2 DNA polymerase and helicase genes revealed high similarity to previously reported strains from Serbia and other countries. The occurrence of these outbreaks in Prussian carp populations in lakes indicates the probable spread of the virus within freshwater ecosystems in Serbia, potentially impacting the degradation of aquatic habitats.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741956"},"PeriodicalIF":3.9,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744631","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1016/j.aquaculture.2024.741938
Min Jae Kim, Dong-Jun Shin, Joon-Gyu Min, Kwang Il Kim
White spot syndrome virus (WSSV), initially identified in 1992, is recognized as a major global viral threat to shrimp farming. Testing pooled samples, which involve collectively assessing multiple individual animal specimens, is the most efficient method in surveillance programs. Currently, despite its advantages, pooling for WSSV surveillance is not typically recommended due to its insufficient evaluation. Therefore, this study focused on assessing the applicability of pooling for WSSV surveillance. By evaluating the analytical performance, a reduction was observed, evidenced by the increased CT values in the mixed group (pleopod + hepatopancreas) compared to those in the pleopod group. From the evaluation of the influence on diagnostic performance, pools showed a detection rate greater than 82.50 %, regardless of pool size, for G2–G3 severity grades. For the G0–G1 grades, the detection rate increased from 58.33 % to 93.33 % as the number of positive samples increased from 1 to 3 in a pool size of 5, whereas for a pool size of 10, the rate increased from 31.67 % to 86.67 % as the number of positive samples increased from 1 to 5. Notably, the cutoff values for the applicability of pools were determined to be 103.39 and 104.61 copies/mg for a single positive sample with pool sizes of 5 and 10, respectively. Similarly, in a simulation with 2 % prevalence and 160 shrimp, the detection rate for a pool size of 5 increased from 42.85 % to 80.86 % as severity grades progressed from G0–G1 to G1–G2, whereas for a pool size of 10, the detection rate improved from 46.73 % to 80.40 % as severity grades advanced from G1–G2 to G2–G3. Furthermore, at G0–G1, although a pool size of 5 showed 71.39 % surveillance sensitivity with a sample size of 150, it increased to 95.20 % with 360 shrimp. To adequately apply the diagnostic method for WSSV surveillance, it is necessary to consider the seasonal outbreak characteristics of the disease and pathogen activation. Based on these results, to enhance the efficiency and sensitivity of surveillance during the low-risk seasons for white spot disease (WSD), employing a pool size of 5 along with a larger sample size is recommended. Moreover, pooling could aid in rapid screening for WSSV during the endemic period. This study anticipates that pooling strategies tailored to the disease status may significantly contribute to reducing the incidence and spread of WSD through efficient and rapid testing.
{"title":"Evaluation of pooling in surveillance for white spot syndrome virus","authors":"Min Jae Kim, Dong-Jun Shin, Joon-Gyu Min, Kwang Il Kim","doi":"10.1016/j.aquaculture.2024.741938","DOIUrl":"10.1016/j.aquaculture.2024.741938","url":null,"abstract":"<div><div>White spot syndrome virus (WSSV), initially identified in 1992, is recognized as a major global viral threat to shrimp farming. Testing pooled samples, which involve collectively assessing multiple individual animal specimens, is the most efficient method in surveillance programs. Currently, despite its advantages, pooling for WSSV surveillance is not typically recommended due to its insufficient evaluation. Therefore, this study focused on assessing the applicability of pooling for WSSV surveillance. By evaluating the analytical performance, a reduction was observed, evidenced by the increased C<sub>T</sub> values in the mixed group (pleopod + hepatopancreas) compared to those in the pleopod group. From the evaluation of the influence on diagnostic performance, pools showed a detection rate greater than 82.50 %, regardless of pool size, for G2–G3 severity grades. For the G0–G1 grades, the detection rate increased from 58.33 % to 93.33 % as the number of positive samples increased from 1 to 3 in a pool size of 5, whereas for a pool size of 10, the rate increased from 31.67 % to 86.67 % as the number of positive samples increased from 1 to 5. Notably, the cutoff values for the applicability of pools were determined to be 10<sup>3.39</sup> and 10<sup>4.61</sup> copies/mg for a single positive sample with pool sizes of 5 and 10, respectively. Similarly, in a simulation with 2 % prevalence and 160 shrimp, the detection rate for a pool size of 5 increased from 42.85 % to 80.86 % as severity grades progressed from G0–G1 to G1–G2, whereas for a pool size of 10, the detection rate improved from 46.73 % to 80.40 % as severity grades advanced from G1–G2 to G2–G3. Furthermore, at G0–G1, although a pool size of 5 showed 71.39 % surveillance sensitivity with a sample size of 150, it increased to 95.20 % with 360 shrimp. To adequately apply the diagnostic method for WSSV surveillance, it is necessary to consider the seasonal outbreak characteristics of the disease and pathogen activation. Based on these results, to enhance the efficiency and sensitivity of surveillance during the low-risk seasons for white spot disease (WSD), employing a pool size of 5 along with a larger sample size is recommended. Moreover, pooling could aid in rapid screening for WSSV during the endemic period. This study anticipates that pooling strategies tailored to the disease status may significantly contribute to reducing the incidence and spread of WSD through efficient and rapid testing.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741938"},"PeriodicalIF":3.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1016/j.aquaculture.2024.741940
Jeff Chia-Kai Hsu , Te-Ken Hsu , Shuh-Bing Guan , Po-Wei Chi , Chih-Ying Chiang , Colin William Pouton , Zi-Wey Wong , Po-Yu Huang , Li-Li Chen
Shrimp aquaculture faces major challenges from viral diseases, such as the white spot syndrome virus (WSSV), leading to high mortality and economic losses. Vaccination offers a potential solution, but practical oral delivery systems remain limited. Therefore, this study aims to elucidate the feasibility of using heat-killed attenuated Listeria monocytogenes (HKALM) as a safer alternative for plasmid delivery in shrimp. A triple-layered safety approach—bacterial attenuation, a suicide mechanism, and heat-killing—was implemented to minimize environmental risks. HKALM effectively delivered plasmids into shrimp hemocytes and intestinal cells, with the green fluorescent protein used as a reporter to enable detectable gene expression. Additionally, expressing the WSSV envelope protein VP53A through HKALM significantly increased phenoloxidase activity and improved shrimp survival rates after WSSV infection. These findings suggest that HKALM offers a safer, scalable platform for oral vaccine development in shrimp aquaculture, addressing critical challenges in disease management.
{"title":"Development of an oral vaccine delivery system for shrimp aquaculture using attenuated Listeria monocytogenes","authors":"Jeff Chia-Kai Hsu , Te-Ken Hsu , Shuh-Bing Guan , Po-Wei Chi , Chih-Ying Chiang , Colin William Pouton , Zi-Wey Wong , Po-Yu Huang , Li-Li Chen","doi":"10.1016/j.aquaculture.2024.741940","DOIUrl":"10.1016/j.aquaculture.2024.741940","url":null,"abstract":"<div><div>Shrimp aquaculture faces major challenges from viral diseases, such as the white spot syndrome virus (WSSV), leading to high mortality and economic losses. Vaccination offers a potential solution, but practical oral delivery systems remain limited. Therefore, this study aims to elucidate the feasibility of using heat-killed attenuated <em>Listeria monocytogenes</em> (HKALM) as a safer alternative for plasmid delivery in shrimp. A triple-layered safety approach—bacterial attenuation, a suicide mechanism, and heat-killing—was implemented to minimize environmental risks. HKALM effectively delivered plasmids into shrimp hemocytes and intestinal cells, with the green fluorescent protein used as a reporter to enable detectable gene expression. Additionally, expressing the WSSV envelope protein VP53A through HKALM significantly increased phenoloxidase activity and improved shrimp survival rates after WSSV infection. These findings suggest that HKALM offers a safer, scalable platform for oral vaccine development in shrimp aquaculture, addressing critical challenges in disease management.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741940"},"PeriodicalIF":3.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1016/j.aquaculture.2024.741935
Ge Lin , Peng Chu , Xiang Gong, Yuxi Liu, Kai Zhang, Xianhui Ning, Tao Wang, Shaowu Yin, Jie Ji
Toll like receptors (TLRs) are essential for host defense, recognizing pathogen-associated molecular patterns (PAMPs) from infectious agents. However, limited information is available on TLRs in Takifugu fasciatus, a model species for comparative genomics and aquaculture. This study identified twelve T. fasciatus TLR genes, mapping them across nine chromosomes. Phylogenetic analysis revealed that the TfTLRs share orthologs from five vertebrate subfamilies, excluding the TLR4 subfamily. Gene synteny analysis confirmed the conservation of neighboring genes of TfTLRs within Neoteleostei, validating our annotation of TfTLRs. RT-PCR analysis showed ubiquitous expression of all TfTLRs across nine tissues, underscoring their role in immune homeostasis. Furthermore, RT-qPCR analysis showed significant expression changes in TfTLR2, TfTLR3, TfTLR5m, TfTLR5s and TfTLR8 in response to Aeromonas hydrophilia infection in vivo, while TfTLR3, TfTLR5m, TfTLR22, and TfTLR23 were responsive to poly I:C both in vivo and in vitro. In contrast, no significant TfTLRs expression changes were observed upon Ichthyophthirius multifiliis infection, suggesting their distinct roles in pathogens recognition. These findings deepen our understanding of TLR function in teleosts, providing valuable insights for future immune research in fish species.
{"title":"Toll-like receptors landscape in Takifugu fasciatus: Dynamic responses to Aeromonas hydrophila, poly I:C, and Ichthyophthirius multifiliis challenge","authors":"Ge Lin , Peng Chu , Xiang Gong, Yuxi Liu, Kai Zhang, Xianhui Ning, Tao Wang, Shaowu Yin, Jie Ji","doi":"10.1016/j.aquaculture.2024.741935","DOIUrl":"10.1016/j.aquaculture.2024.741935","url":null,"abstract":"<div><div>Toll like receptors (TLRs) are essential for host defense, recognizing pathogen-associated molecular patterns (PAMPs) from infectious agents. However, limited information is available on TLRs in <em>Takifugu fasciatus</em>, a model species for comparative genomics and aquaculture. This study identified twelve <em>T. fasciatus</em> TLR genes, mapping them across nine chromosomes. Phylogenetic analysis revealed that the TfTLRs share orthologs from five vertebrate subfamilies, excluding the TLR4 subfamily. Gene synteny analysis confirmed the conservation of neighboring genes of TfTLRs within Neoteleostei, validating our annotation of TfTLRs. RT-PCR analysis showed ubiquitous expression of all TfTLRs across nine tissues, underscoring their role in immune homeostasis. Furthermore, RT-qPCR analysis showed significant expression changes in TfTLR2, TfTLR3, TfTLR5m, TfTLR5s and TfTLR8 in response to <em>Aeromonas hydrophilia</em> infection <em>in vivo</em>, while TfTLR3, TfTLR5m, TfTLR22, and TfTLR23 were responsive to poly I:C both <em>in vivo</em> and <em>in vitro</em>. In contrast, no significant TfTLRs expression changes were observed upon <em>Ichthyophthirius multifiliis</em> infection, suggesting their distinct roles in pathogens recognition. These findings deepen our understanding of TLR function in teleosts, providing valuable insights for future immune research in fish species.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741935"},"PeriodicalIF":3.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142722775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1016/j.aquaculture.2024.741945
Jianxiang Chen , Pao Xu , Gangchun Xu , Miaomiao Xue , Qingyong Wang , Jiyan He , Changchang He , Changxin Kong , Xiaowei Li , Hang Wang , Huaishun Shen , Hongxia Li , Changyou Song
To improve the yield and quality of Chinese mitten crabs and ensure environmental sustainability, it has become an inevitable trend to replace iced trash fish (Trash) with formulated feeds (Feed) during farming. However, the effect of feeds on fattening male crabs remains unclear. Hence, fattening experiment were conducted with immature male crabs with initial body weight of 153.65 ± 12.23 g, and the effects of formulated feed on fattening were analyzed with metabolomic and lipidomic approach. The results suggested no statistical difference in the growth and development of male crabs fattened with the feeds. The diet potentiated the immune response and repressed apoptosis in the gonads during fattening. Cholesterol accumulation and augmented fatty acid catabolism in the gonads were observed in the Feed group. Additionally, feed fattening diminished protein deposition. Metabolomic analysis indicated that feed fattening promoted lysine degradation and purine metabolism in the gonads. A further lipidomic study discovered that feed fattening mostly contributed to the boosting of phosphatidylcholines (PCs) that contain unsaturated fatty acids via the glycerophospholipid pathway compared to the trash fish group. Correlation analysis showed that enhancing gonadal lysine, purine metabolism and PCs could improve immune response and lipid metabolism. In summarize, the formulated diets effectively substituted trash fish for fattening and were superior in immunological promotion and lipid accumulation. Our results provide novel perspectives into the formulation design and application of the formulated feeds in the process of fattening.
{"title":"Fattening with formulated diets improves the immune response and lipid accumulation in the gonads of male Chinese mitten crab (Eriocheir sinensis)","authors":"Jianxiang Chen , Pao Xu , Gangchun Xu , Miaomiao Xue , Qingyong Wang , Jiyan He , Changchang He , Changxin Kong , Xiaowei Li , Hang Wang , Huaishun Shen , Hongxia Li , Changyou Song","doi":"10.1016/j.aquaculture.2024.741945","DOIUrl":"10.1016/j.aquaculture.2024.741945","url":null,"abstract":"<div><div>To improve the yield and quality of Chinese mitten crabs and ensure environmental sustainability, it has become an inevitable trend to replace iced trash fish (Trash) with formulated feeds (Feed) during farming. However, the effect of feeds on fattening male crabs remains unclear. Hence, fattening experiment were conducted with immature male crabs with initial body weight of 153.65 ± 12.23 g, and the effects of formulated feed on fattening were analyzed with metabolomic and lipidomic approach. The results suggested no statistical difference in the growth and development of male crabs fattened with the feeds. The diet potentiated the immune response and repressed apoptosis in the gonads during fattening. Cholesterol accumulation and augmented fatty acid catabolism in the gonads were observed in the Feed group. Additionally, feed fattening diminished protein deposition. Metabolomic analysis indicated that feed fattening promoted lysine degradation and purine metabolism in the gonads. A further lipidomic study discovered that feed fattening mostly contributed to the boosting of phosphatidylcholines (PCs) that contain unsaturated fatty acids via the glycerophospholipid pathway compared to the trash fish group. Correlation analysis showed that enhancing gonadal lysine, purine metabolism and PCs could improve immune response and lipid metabolism. In summarize, the formulated diets effectively substituted trash fish for fattening and were superior in immunological promotion and lipid accumulation. Our results provide novel perspectives into the formulation design and application of the formulated feeds in the process of fattening.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741945"},"PeriodicalIF":3.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744609","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Characteristics of the first blastomeres in fish have been evaluated in previous studies as a tool for predicting egg and larva quality. Nevertheless, there are still few studies of the presence of inclusions in fish blastodiscs or blastomeres. The object of the present study was to describe the relationship between cellular inclusions and some embryo quality parameters (symmetry, fertility rate, survival rate) in farmed coho salmon. Eggs from 261 females were fertilized with 400 × 103 spermatozoa/egg and incubated in the dark in separated flow-through incubators. Embryos at the four-cell stage were fixed in Stockard's solution and the blastodiscs were classified as: i) unfertilized, ii) fertilized with inclusion, and iii) without inclusion. The blastomere symmetry was also recorded. Embryos from 30 females (15 with and 15 without inclusions) were incubated until pigmented eye embryo stage to determine the survival rate. Cell inclusions were detected in 8.81 % of the females evaluated, with 24.1 ± 24.2 of the eggs from each of those females presenting inclusions. Egg samples with this abnormality showed significantly lower fertility, blastomere symmetry, and survival rate when compared with eggs without inclusions.
{"title":"The presence of inclusions in blastodiscs of coho salmon embryos (Oncorhynchus kisutch) is associated with low rates of fertility and embryo survival","authors":"Leydy Sandoval-Vargas , Maritza Pérez-Atehortúa , Elías Figueroa Villalobos , Fernanda Schulz Fontealba , Mauricio Schulz Ferrada , Iván Valdebenito","doi":"10.1016/j.aquaculture.2024.741941","DOIUrl":"10.1016/j.aquaculture.2024.741941","url":null,"abstract":"<div><div>Characteristics of the first blastomeres in fish have been evaluated in previous studies as a tool for predicting egg and larva quality. Nevertheless, there are still few studies of the presence of inclusions in fish blastodiscs or blastomeres. The object of the present study was to describe the relationship between cellular inclusions and some embryo quality parameters (symmetry, fertility rate, survival rate) in farmed coho salmon. Eggs from 261 females were fertilized with 400 × 10<sup>3</sup> spermatozoa/egg and incubated in the dark in separated flow-through incubators. Embryos at the four-cell stage were fixed in Stockard's solution and the blastodiscs were classified as: i) unfertilized, ii) fertilized with inclusion, and iii) without inclusion. The blastomere symmetry was also recorded. Embryos from 30 females (15 with and 15 without inclusions) were incubated until pigmented eye embryo stage to determine the survival rate. Cell inclusions were detected in 8.81 % of the females evaluated, with 24.1 ± 24.2 of the eggs from each of those females presenting inclusions. Egg samples with this abnormality showed significantly lower fertility, blastomere symmetry, and survival rate when compared with eggs without inclusions.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741941"},"PeriodicalIF":3.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142722666","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1016/j.aquaculture.2024.741949
Yukang Chen , Guangxi Yu , Hongtao Kang , Jiangyuan Liu , Song Gao , Zhiguo Dong , Pei Wang
White spot syndrome virus (WSSV) and acute hepatopancreatic necrosis disease caused by virulence gene-containing Vibrio bacteria (AHPND) are two important infectious diseases that affect shrimp, including the economically important species Penaeus vannamei. Because these pathogens can spread rapidly in shrimp aquaculture facilities and because effective therapies are presently lacking, WSSV and AHPND have resulted in significant economic losses in the shrimp farming industry. Thus, the early detection of WSSV and AHPND is essential for shrimp farming. This study combines recombinase polymerase amplification (RPA) technology with the nuclease Argonaute from Pyrococcus furiosus (PfAgo) to develop a duplex in-one-tube detection method with color indication (DIDCi) for WSSV and AHPND utilizing a combination of two fluorescence probes. The method successfully achieves a satisfactory sensitivity of a single gene copy per reaction for WSSV and 102 gene copies per reaction for AHPND. The detection exhibits good specificity and convenience, with the detection results indicated by different colors that can be read with the naked eye, thereby providing an effective tool for the early detection of WSSV and AHPND. This study marks the first application of PfAgo for multiplex nucleic acid detection of aquacultural pathogens and explores the strategy of using combinations of fluorescence probes for the identification of multiple targets in one tube.
{"title":"Duplex in-one-tube detection of two important shrimp farming pathogens with color indication using a method combining RPA and PfAgo","authors":"Yukang Chen , Guangxi Yu , Hongtao Kang , Jiangyuan Liu , Song Gao , Zhiguo Dong , Pei Wang","doi":"10.1016/j.aquaculture.2024.741949","DOIUrl":"10.1016/j.aquaculture.2024.741949","url":null,"abstract":"<div><div>White spot syndrome virus (WSSV) and acute hepatopancreatic necrosis disease caused by virulence gene-containing <em>Vibrio</em> bacteria (AHPND) are two important infectious diseases that affect shrimp, including the economically important species <em>Penaeus vannamei</em>. Because these pathogens can spread rapidly in shrimp aquaculture facilities and because effective therapies are presently lacking, WSSV and AHPND have resulted in significant economic losses in the shrimp farming industry. Thus, the early detection of WSSV and AHPND is essential for shrimp farming. This study combines recombinase polymerase amplification (RPA) technology with the nuclease Argonaute from <em>Pyrococcus furiosus</em> (<em>Pf</em>Ago) to develop a duplex in-one-tube detection method with color indication (DIDCi) for WSSV and AHPND utilizing a combination of two fluorescence probes. The method successfully achieves a satisfactory sensitivity of a single gene copy per reaction for WSSV and 10<sup>2</sup> gene copies per reaction for AHPND. The detection exhibits good specificity and convenience, with the detection results indicated by different colors that can be read with the naked eye, thereby providing an effective tool for the early detection of WSSV and AHPND. This study marks the first application of <em>Pf</em>Ago for multiplex nucleic acid detection of aquacultural pathogens and explores the strategy of using combinations of fluorescence probes for the identification of multiple targets in one tube.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741949"},"PeriodicalIF":3.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142722778","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1016/j.aquaculture.2024.741911
James Kijas , Roberto Carvalheiro , Moira Menzies , Sean McWilliam , Greg Coman , Andrew Foote , Ralf Moser , Louise Franz , Melony Sellars
Domestication and subsequent artificial selection of Pacific white shrimp (Penaeus vannamei) commenced around 1980 and the species is now the most widely farmed crustacean in the world. We documented generally high levels of genetic diversity within 21 globally distributed farmed populations using 44,522 SNP collected using an Illumina SNP chip. The sample set also included 86 wild P. vannamei, facilitating investigation of within population diversity and the extent of divergence between wild shrimp. This revealed weak population structure amongst wild populations from Panama, Honduras, Guatemala and Colombia (FST range 0–3 %) and more significant divergence between those and the wild Mexican animals that should be considered a distinct subpopulation. Comparison between wild and farmed global populations showed low to moderate levels of population differentiation (FST < 6 %) with farmed Asian populations most divergent. Interestingly, SNP chip data documented a marked absence of widespread reduction in the diversity in farmed populations when compared with their wild relatives. To ensure the results were not influenced by ascertainment bias, whole genome sequencing was used to identify 4.13 M SNP in a subset of both farmed and wild shrimp. Observed levels of nucleotide diversity in wild (π = 1.95 × 10−4) and farmed animals (π = 2.05 × 10−4) were similar, suggesting that broad and repeated introductions of wild shrimp have likely contributed to the domestication process. A search for selection sweeps identified a small collection of outlier regions (38 intervals spanning 2.1 Mb) and 20 protein coding genes. The results represent a broad snapshot of the genetic diversity and divergence that exists within this important aquaculture species.
{"title":"Genome-wide SNP variation reveals genetic structure and high levels of diversity in a global survey of wild and farmed Pacific white shrimp","authors":"James Kijas , Roberto Carvalheiro , Moira Menzies , Sean McWilliam , Greg Coman , Andrew Foote , Ralf Moser , Louise Franz , Melony Sellars","doi":"10.1016/j.aquaculture.2024.741911","DOIUrl":"10.1016/j.aquaculture.2024.741911","url":null,"abstract":"<div><div>Domestication and subsequent artificial selection of Pacific white shrimp (<em>Penaeus vannamei</em>) commenced around 1980 and the species is now the most widely farmed crustacean in the world. We documented generally high levels of genetic diversity within 21 globally distributed farmed populations using 44,522 SNP collected using an Illumina SNP chip. The sample set also included 86 wild <em>P. vannamei</em>, facilitating investigation of within population diversity and the extent of divergence between wild shrimp. This revealed weak population structure amongst wild populations from Panama, Honduras, Guatemala and Colombia (<em>F</em><sub>ST</sub> range 0–3 %) and more significant divergence between those and the wild Mexican animals that should be considered a distinct subpopulation. Comparison between wild and farmed global populations showed low to moderate levels of population differentiation (<em>F</em><sub>ST</sub> < 6 %) with farmed Asian populations most divergent. Interestingly, SNP chip data documented a marked absence of widespread reduction in the diversity in farmed populations when compared with their wild relatives. To ensure the results were not influenced by ascertainment bias, whole genome sequencing was used to identify 4.13 M SNP in a subset of both farmed and wild shrimp. Observed levels of nucleotide diversity in wild (π = 1.95 × 10<sup>−4</sup>) and farmed animals (π = 2.05 × 10<sup>−4</sup>) were similar, suggesting that broad and repeated introductions of wild shrimp have likely contributed to the domestication process. A search for selection sweeps identified a small collection of outlier regions (38 intervals spanning 2.1 Mb) and 20 protein coding genes. The results represent a broad snapshot of the genetic diversity and divergence that exists within this important aquaculture species.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741911"},"PeriodicalIF":3.9,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744624","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-25DOI: 10.1016/j.aquaculture.2024.741933
Chengyan Han , Atsushi Hagiwara , Jae-Seong Lee , Yoshitaka Sakakura
Trace elements are essential nutrients for aquatic organisms. Aquatic species rely primarily on external sources (diet and the environment) for trace mineral nutrition. Trace element bioavailability differs among species and is influenced by the forms of minerals (organic or inorganic) and environmental factors. Rotifers that belong to the Brachionus genus play a significant role in aquaculture operations (by serving as live feed source for marine larval rearing) and are also important in ecological studies with regard to aquatic ecosystems. Rotifers engage in cyclical parthenogenesis, enabling rapid population expansion through asexual reproduction and the formation of resting eggs via sexual reproduction. The generation of resting egg facilitates long-term preservation and enables a consistent supply of rotifers. Rotifers are often subjected to trace element conditions through indirect trophic transfer or direct exposure in rearing systems or fields. The nutritional and toxicological effects of essential trace elements, such as iron, zinc, selenium, and copper in rotifers have been studied. While we identified species-specific modifications in reproductive patterns and metabolic activities, such as inhibited or enhanced sexual reproduction in different rotifers, with distinct responses in neutral lipid accumulation in reproductive organs and oxidative defenses within the Brachionus plicatilis species complex under iron and zinc exposure. Accordingly, we hypothesized that specific trace elements function as nutrients for growth and essential metabolisms, while also controlling the transition of rotifer reproductive patterns. To strengthen our understanding, this paper presented a systematic literature review on the effects of various essential trace elements, especially iron, zinc, selenium, and copper on the reproduction of rotifers. We elucidated the mechanisms from multiple perspectives, including behavior, biochemical, and genetic. This review also discussed aspects of their influence on phytoplankton–zooplankton–larval interactions, given the importance of trace elements in the aquatic food web. Finally, we outlined the regulatory effects of trace elements on intra- and interspecific responses from individual and population ecological viewpoints, and the ecophysiological significance of interactions with other elements and environmental factors. Understanding the interactions of rotifers with trace elements and the mechanisms underlying species-specific responses provides valuable insights into rotifer culture management and contributes to improved aquaculture practices.
{"title":"Species-specific responses to trace elements in rotifer reproduction: A critical review","authors":"Chengyan Han , Atsushi Hagiwara , Jae-Seong Lee , Yoshitaka Sakakura","doi":"10.1016/j.aquaculture.2024.741933","DOIUrl":"10.1016/j.aquaculture.2024.741933","url":null,"abstract":"<div><div>Trace elements are essential nutrients for aquatic organisms. Aquatic species rely primarily on external sources (diet and the environment) for trace mineral nutrition. Trace element bioavailability differs among species and is influenced by the forms of minerals (organic or inorganic) and environmental factors. Rotifers that belong to the <em>Brachionus</em> genus play a significant role in aquaculture operations (by serving as live feed source for marine larval rearing) and are also important in ecological studies with regard to aquatic ecosystems. Rotifers engage in cyclical parthenogenesis, enabling rapid population expansion through asexual reproduction and the formation of resting eggs via sexual reproduction. The generation of resting egg facilitates long-term preservation and enables a consistent supply of rotifers. Rotifers are often subjected to trace element conditions through indirect trophic transfer or direct exposure in rearing systems or fields. The nutritional and toxicological effects of essential trace elements, such as iron, zinc, selenium, and copper in rotifers have been studied. While we identified species-specific modifications in reproductive patterns and metabolic activities, such as inhibited or enhanced sexual reproduction in different rotifers, with distinct responses in neutral lipid accumulation in reproductive organs and oxidative defenses within the <em>Brachionus plicatilis</em> species complex under iron and zinc exposure. Accordingly, we hypothesized that specific trace elements function as nutrients for growth and essential metabolisms, while also controlling the transition of rotifer reproductive patterns. To strengthen our understanding, this paper presented a systematic literature review on the effects of various essential trace elements, especially iron, zinc, selenium, and copper on the reproduction of rotifers. We elucidated the mechanisms from multiple perspectives, including behavior, biochemical, and genetic. This review also discussed aspects of their influence on phytoplankton–zooplankton–larval interactions, given the importance of trace elements in the aquatic food web. Finally, we outlined the regulatory effects of trace elements on intra- and interspecific responses from individual and population ecological viewpoints, and the ecophysiological significance of interactions with other elements and environmental factors. Understanding the interactions of rotifers with trace elements and the mechanisms underlying species-specific responses provides valuable insights into rotifer culture management and contributes to improved aquaculture practices.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"597 ","pages":"Article 741933"},"PeriodicalIF":3.9,"publicationDate":"2024-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}