Swimming performance is a critical locomotor trait that directly influences fish survival and reproductive success, playing an increasingly recognized role in the conservation and recovery of wild fish populations. Although exercise training can enhance swimming performance through both muscular aerobic and anaerobic metabolic phenotypes, the specific effects and underlying mechanisms remain poorly understood in the large yellow croaker (Larimichthys crocea). Herein, we subjected 5 cm juvenile large yellow croaker to exercise training at intensities of 0, 1, 2, and 4 BL/s for 6 h per day over 30 d, and evaluated both critical swimming speed (Ucrit) and constant acceleration speed (Ucat). Behavioral results showed that training at 4 BL/s significantly improved Ucrit and Ucat, with increases of 34.65 % and 24.66 %, respectively. Physiological analysis indicated that all exercise groups exhibited a significant increase in lactate dehydrogenase (LDH) activity and a significant decrease in 5-hydroxytryptamine (5-HT) concentration. In contrast, superoxide dismutase (SOD) activity significantly declined only in 2 BL/s, and cytochrome c oxidase (COX) concentration remained unchanged across all groups. Non-targeted metabolomics identified 143 significantly altered metabolites, primarily enriched in pathways including “glycerolipid metabolism”, “glycine, serine and threonine metabolism”, “choline metabolism in cancer”, “lysine degradation”, and “nucleotide metabolism”. Integrated transcriptomic and metabolomic analysis revealed that exercise training enhanced muscular metabolic phenotype by modulating key metabolites such as palmitoylcarnitine, glycerol-3-phosphate, allysine, guanosine, hypoxanthine, and glycerophosphocholine. These changes facilitated more efficient substrate utilization, optimized energy allocation, and improved antioxidant capacity, collectively contributing to the remodeling of muscular and behavioral performance. This study demonstrates that exercise training can effectively promote behavioral fitness in stock-enhanced fish species and provides insights into the metabolic basis underlying these improvements.
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