Pub Date : 2026-01-03DOI: 10.1016/j.bej.2026.110071
Gerardo A. Gómez-Ramos , Lilia A. Prado-Barragán , Sergio Huerta-Ochoa , Victor M. Rivera , Ángeles García-Hernández , Carlos O. Castillo-Araiza
Solid-state fermentation (SSF) of agrifood byproducts (AFBP) offers a sustainable route for producing high-value biomolecules, yet its industrial adoption is constrained by limited understanding of transport phenomena in wall-cooled packed bioreactors. Despite their potential for large-scale SSF, reliable methods for describing heat and mass transfer remain scarce. Building on previous fluid-dynamic studies, this work characterizes intrinsic transport mechanisms in a bench-scale wall-cooled tray packed with AFBP as substrate. An engineering framework not previously applied to these systems, integrating abiotic experiments, fluid dynamics, and transient analysis, was applied to estimate the effective thermal conductivity (), wall heat transfer coefficient (), and axial dispersion coefficient (). Experiments under conditions favorable to Yarrowia lipolytica 2.2ab (318.15 K, 60 % moisture on a dry-weight basis, and inlet specific airflow rates, VkgM, of 1.875–6.250 L.kg⁻¹.min⁻¹) yielded values of 0.565–4.34 W.m⁻¹ .K⁻¹ for , 0.865–25.9 W.m⁻².K⁻¹ for , and 2.60 × 10⁻³ –5.30 × 10⁻³ m².s⁻¹ for . These results differ from previous SSF studies employing AFBP, highlighting the influence of reactor configuration, operating conditions, and parameter estimation approach. The proposed methodology provides a reliable framework for evaluating heat and mass transfer in SSF systems using AFBP as a substrate and establishes a foundation for predictive design and scale-up of packed bioreactors in biotechnological applications.
{"title":"Transient heat and mass transfer in a wall-cooled packed-tray bioreactor for solid-state fermentation: An engineering framework for parameter estimation","authors":"Gerardo A. Gómez-Ramos , Lilia A. Prado-Barragán , Sergio Huerta-Ochoa , Victor M. Rivera , Ángeles García-Hernández , Carlos O. Castillo-Araiza","doi":"10.1016/j.bej.2026.110071","DOIUrl":"10.1016/j.bej.2026.110071","url":null,"abstract":"<div><div>Solid-state fermentation (SSF) of agrifood byproducts (AFBP) offers a sustainable route for producing high-value biomolecules, yet its industrial adoption is constrained by limited understanding of transport phenomena in wall-cooled packed bioreactors. Despite their potential for large-scale SSF, reliable methods for describing heat and mass transfer remain scarce. Building on previous fluid-dynamic studies, this work characterizes intrinsic transport mechanisms in a bench-scale wall-cooled tray packed with AFBP as substrate. An engineering framework not previously applied to these systems, integrating abiotic experiments, fluid dynamics, and transient analysis, was applied to estimate the effective thermal conductivity (<span><math><msub><mrow><mi>k</mi></mrow><mrow><mi>eff</mi></mrow></msub></math></span>), wall heat transfer coefficient (<span><math><msub><mrow><mi>h</mi></mrow><mrow><mi>w</mi></mrow></msub></math></span>), and axial dispersion coefficient (<span><math><msub><mrow><mi>D</mi></mrow><mrow><mi>ax</mi></mrow></msub></math></span>). Experiments under conditions favorable to <em>Yarrowia lipolytica</em> 2.2ab (318.15 K, 60 % moisture on a dry-weight basis, and inlet specific airflow rates, <em>VkgM</em>, of 1.875–6.250 L.kg⁻¹.min⁻¹) yielded values of 0.565–4.34 W.m⁻¹ .K⁻¹ for <span><math><msub><mrow><mi>k</mi></mrow><mrow><mi>eff</mi></mrow></msub></math></span>, 0.865–25.9 W.m⁻².K⁻¹ for <span><math><msub><mrow><mi>h</mi></mrow><mrow><mi>w</mi></mrow></msub></math></span>, and 2.60 × 10⁻³ –5.30 × 10⁻³ m².s⁻¹ for <span><math><msub><mrow><mi>D</mi></mrow><mrow><mi>ax</mi></mrow></msub></math></span>. These results differ from previous SSF studies employing AFBP, highlighting the influence of reactor configuration, operating conditions, and parameter estimation approach. The proposed methodology provides a reliable framework for evaluating heat and mass transfer in SSF systems using AFBP as a substrate and establishes a foundation for predictive design and scale-up of packed bioreactors in biotechnological applications.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"228 ","pages":"Article 110071"},"PeriodicalIF":3.7,"publicationDate":"2026-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145923132","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-02DOI: 10.1016/j.bej.2025.110067
Thi Tam An Tran , Edouard Gnoumou , Quang-Vinh Le , Nguyen The Duc Hanh , Nanthiya Hansupalak , Yi-Hua Gao , Bing-Lan Liu , Chi-Yun Wang , Kuei-Hsiang Chen , Yu-Kaung Chang
Egg whites are an abundant source of natural proteins with inherent biological activities, including antibacterial properties. In this study, a novel antibacterial nanofiber membrane was developed by immobilizing egg white proteins (EWP) onto an electrospun polyacrylonitrile (PAN) membrane. The PAN membrane was first modified via alkaline hydrolysis to introduce carboxyl groups (P-COOH), followed by chitosan (CS) grafting (P-COOH-CS) to enhance biocompatibility and protein attachment. EWP was then immobilized onto the surface through ionic and covalent interactions. The immobilization process was optimized by varying pH, CS molecular weight, and solute concentration. The resulting P-COOH-CS-EWP membrane exhibited strong antibacterial efficacy, achieving 98.25 ± 2.09 % reduction in Gram-negative E. coli and 88.24 ± 2.93 % reduction in Gram-positive S. aureus. Furthermore, the nanofiber membrane demonstrated good reusability and stability, retaining 75.84 ± 3.73 % activity after three cycles and 76.41 ± 0.79 % after four weeks of storage. This work highlights the potential of EWP-functionalized nanofiber membranes as a cost-effective, eco-friendly antibacterial material. The approach provides a sustainable strategy for recycling EWP waste and can be applied in biomedical, food packaging, and environmental applications that require antibacterial protection.
{"title":"Sustainable chitosan-egg white protein nanofiber membranes for efficient bacterial capture and killing","authors":"Thi Tam An Tran , Edouard Gnoumou , Quang-Vinh Le , Nguyen The Duc Hanh , Nanthiya Hansupalak , Yi-Hua Gao , Bing-Lan Liu , Chi-Yun Wang , Kuei-Hsiang Chen , Yu-Kaung Chang","doi":"10.1016/j.bej.2025.110067","DOIUrl":"10.1016/j.bej.2025.110067","url":null,"abstract":"<div><div>Egg whites are an abundant source of natural proteins with inherent biological activities, including antibacterial properties. In this study, a novel antibacterial nanofiber membrane was developed by immobilizing egg white proteins (EWP) onto an electrospun polyacrylonitrile (PAN) membrane. The PAN membrane was first modified via alkaline hydrolysis to introduce carboxyl groups (P-COOH), followed by chitosan (CS) grafting (P-COOH-CS) to enhance biocompatibility and protein attachment. EWP was then immobilized onto the surface through ionic and covalent interactions. The immobilization process was optimized by varying pH, CS molecular weight, and solute concentration. The resulting P-COOH-CS-EWP membrane exhibited strong antibacterial efficacy, achieving 98.25 ± 2.09 % reduction in Gram-negative <em>E. coli</em> and 88.24 ± 2.93 % reduction in Gram-positive <em>S. aureus.</em> Furthermore, the nanofiber membrane demonstrated good reusability and stability, retaining 75.84 ± 3.73 % activity after three cycles and 76.41 ± 0.79 % after four weeks of storage. This work highlights the potential of EWP-functionalized nanofiber membranes as a cost-effective, eco-friendly antibacterial material. The approach provides a sustainable strategy for recycling EWP waste and can be applied in biomedical, food packaging, and environmental applications that require antibacterial protection.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"228 ","pages":"Article 110067"},"PeriodicalIF":3.7,"publicationDate":"2026-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145923178","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-02DOI: 10.1016/j.bej.2025.110070
Qian-Dong Qin , Jun-Cheng Han , Jin Cai , Tong Cai , Hao-Nan Xiao , Hou-Yun Yang , Kan Wang
To address the limited denitrification efficiency caused by low carbon-to-nitrogen (C/N) ratio in municipal wastewater effluents, a mixotrophic denitrification reactor (PWSMDR) was constructed utilizing polycaprolactone/wheat straw composite (PWS) and sulfur as dual electron donors. Its performance was systematically compared with a heterotrophic denitrification reactor (PWHDR) employing PWS as the sole electron donor. The results demonstrated that PWSMDR achieved a high nitrate removal efficiency of approximately 99.2 % under a hydraulic retention time (HRT) of 2 h, with a nitrate removal rate of 0.38 kg N/m3/d, representing an increase of nearly 23 % compared with PWHDR. Furthermore, PWSMDR exhibited enhanced resilience to shock loading. Autotrophic and heterotrophic denitrification pathways in PWSMDR were responsible for 33.6–62.3 % and 37.7–66.4 % of the nitrate removal, respectively. High-throughput sequencing further revealed a significant enrichment of key autotrophic denitrifiers (e.g. Thiobacillus and Sulfurimonas) and heterotrophic denitrifiers (e.g. Thauera, Dechloromonas, and Diaphorobacter) in PWSMDR. The abundance of key functional genes involved in carbon, sulfur, and nitrogen transformations was enhanced in PWSMDR, promoting more efficient nitrate reduction to N2. Additionally, the effluent COD and TN in PWSMDR were maintained at approximately 14 mg/L and 0.95 mg/L, respectively. These findings demonstrate that the PWS–sulfur mixotrophic denitrification strategy not only ensures highly efficient and stable nitrogen removal, but also offers a cost-effective and sustainable engineering approach for municipal tailwater polishing.
{"title":"Coupled biodegradable polymer composite and sulfur-driven mixotrophic denitrification toward municipal tailwater polishing: Process performance and microbial synergism","authors":"Qian-Dong Qin , Jun-Cheng Han , Jin Cai , Tong Cai , Hao-Nan Xiao , Hou-Yun Yang , Kan Wang","doi":"10.1016/j.bej.2025.110070","DOIUrl":"10.1016/j.bej.2025.110070","url":null,"abstract":"<div><div>To address the limited denitrification efficiency caused by low carbon-to-nitrogen (C/N) ratio in municipal wastewater effluents, a mixotrophic denitrification reactor (PWSMDR) was constructed utilizing polycaprolactone/wheat straw composite (PWS) and sulfur as dual electron donors. Its performance was systematically compared with a heterotrophic denitrification reactor (PWHDR) employing PWS as the sole electron donor. The results demonstrated that PWSMDR achieved a high nitrate removal efficiency of approximately 99.2 % under a hydraulic retention time (HRT) of 2 h, with a nitrate removal rate of 0.38 kg N/m<sup>3</sup>/d, representing an increase of nearly 23 % compared with PWHDR. Furthermore, PWSMDR exhibited enhanced resilience to shock loading. Autotrophic and heterotrophic denitrification pathways in PWSMDR were responsible for 33.6–62.3 % and 37.7–66.4 % of the nitrate removal, respectively. High-throughput sequencing further revealed a significant enrichment of key autotrophic denitrifiers (e.g. <em>Thiobacillus</em> and <em>Sulfurimonas</em>) and heterotrophic denitrifiers (e.g. <em>Thauera</em>, <em>Dechloromonas</em>, and <em>Diaphorobacter</em>) in PWSMDR. The abundance of key functional genes involved in carbon, sulfur, and nitrogen transformations was enhanced in PWSMDR, promoting more efficient nitrate reduction to N<sub>2</sub>. Additionally, the effluent COD and TN in PWSMDR were maintained at approximately 14 mg/L and 0.95 mg/L, respectively. These findings demonstrate that the PWS–sulfur mixotrophic denitrification strategy not only ensures highly efficient and stable nitrogen removal, but also offers a cost-effective and sustainable engineering approach for municipal tailwater polishing.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"228 ","pages":"Article 110070"},"PeriodicalIF":3.7,"publicationDate":"2026-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145923136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-02DOI: 10.1016/j.bej.2026.110072
Sneha Banerjee, Anna Mariya, Sreeja Vangapally, Bhaskar Paidimuddala
Nanobody-Drug Conjugates (NDCs) represent a rapidly emerging class of targeted therapeutics that merge the precision of nanobodies with the potency of cytotoxic or functional drug payloads. Unlike traditional Antibody-Drug Conjugates (ADCs), NDCs offer superior advantages, such as improved tissue penetration, faster systemic clearance, and compatibility with modular engineering platforms. Despite these promising features, NDCs remain understated in clinical pipelines, emphasizing the need for integrated insights into their therapeutic development. This review provides an inclusive analysis of structural and functional optimization strategies for NDCs, including nanobody selection, site-specific conjugation chemistries, linker design, and payload engineering to enhance intracellular delivery and therapeutic index. This review also highlights unresolved challenges, including maintaining the biochemical stability of linkers under physiological conditions, the structural and functional integration of diverse drug payloads with nanobody scaffolds, and limited mechanistic insights into nanobody pharmacodynamics and fate following intracellular drug release. Furthermore, this review discusses the recent advancements in both preclinical models and early clinical investigations, with a focus on the expanding therapeutic utility of NDCs in oncology, infectious diseases, and molecular imaging applications to accelerate the clinical viability of NDCs as next-generation biologics.
{"title":"Nanobody-drug conjugates as versatile tools for improving therapeutic potential","authors":"Sneha Banerjee, Anna Mariya, Sreeja Vangapally, Bhaskar Paidimuddala","doi":"10.1016/j.bej.2026.110072","DOIUrl":"10.1016/j.bej.2026.110072","url":null,"abstract":"<div><div>Nanobody-Drug Conjugates (NDCs) represent a rapidly emerging class of targeted therapeutics that merge the precision of nanobodies with the potency of cytotoxic or functional drug payloads. Unlike traditional Antibody-Drug Conjugates (ADCs), NDCs offer superior advantages, such as improved tissue penetration, faster systemic clearance, and compatibility with modular engineering platforms. Despite these promising features, NDCs remain understated in clinical pipelines, emphasizing the need for integrated insights into their therapeutic development. This review provides an inclusive analysis of structural and functional optimization strategies for NDCs, including nanobody selection, site-specific conjugation chemistries, linker design, and payload engineering to enhance intracellular delivery and therapeutic index. This review also highlights unresolved challenges, including maintaining the biochemical stability of linkers under physiological conditions, the structural and functional integration of diverse drug payloads with nanobody scaffolds, and limited mechanistic insights into nanobody pharmacodynamics and fate following intracellular drug release. Furthermore, this review discusses the recent advancements in both preclinical models and early clinical investigations, with a focus on the expanding therapeutic utility of NDCs in oncology, infectious diseases, and molecular imaging applications to accelerate the clinical viability of NDCs as next-generation biologics.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"228 ","pages":"Article 110072"},"PeriodicalIF":3.7,"publicationDate":"2026-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145923137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-31DOI: 10.1016/j.bej.2025.110066
Vikash, Nitai Basak
The integration of fermentation with microbial electrolysis cells (MECs) presents a novel approach to enhance biohydrogen production from organic residues, thereby overcoming the limitations of traditional fermentation systems. This review critically assesses the current state of this combined technology, focusing on bioreactor engineering, scale-up challenges, and its readiness for commercial application. The fermentation stage effectively converts complex biomass into a volatile fatty acid (VFA) rich effluent, which serves as an ideal substrate for the subsequent MEC to achieve near-complete substrate valorisation and significantly higher hydrogen yields. Analysis of bioreactor design reveals a clear trend toward reducing capital costs through the development of low-cost, non-precious metal cathode catalysts, such as nickel alloys and stainless steel, to replace platinum, as well as the adoption of simplified, membraneless reactor architectures. The comprehensive Technology Readiness Level (TRL) assessment places the system at TRL 3–4. However, scaling this technology from the laboratory to industrial application presents considerable challenges. We conclude that bridging the gap to pilot-scale (TRL 6) requires overcoming specific engineering hurdles such as maintaining high current densities in large-scale reactors, mitigating biofouling, and optimizing various biological and physical factors affecting biohydrogen yield in fermentation and MEC systems.
{"title":"Optimum biohydrogen production by combination of fermentation and microbial electrolysis cell: Bioreactor design, scale-up, and technology readiness level analysis","authors":"Vikash, Nitai Basak","doi":"10.1016/j.bej.2025.110066","DOIUrl":"10.1016/j.bej.2025.110066","url":null,"abstract":"<div><div>The integration of fermentation with microbial electrolysis cells (MECs) presents a novel approach to enhance biohydrogen production from organic residues, thereby overcoming the limitations of traditional fermentation systems. This review critically assesses the current state of this combined technology, focusing on bioreactor engineering, scale-up challenges, and its readiness for commercial application. The fermentation stage effectively converts complex biomass into a volatile fatty acid (VFA) rich effluent, which serves as an ideal substrate for the subsequent MEC to achieve near-complete substrate valorisation and significantly higher hydrogen yields. Analysis of bioreactor design reveals a clear trend toward reducing capital costs through the development of low-cost, non-precious metal cathode catalysts, such as nickel alloys and stainless steel, to replace platinum, as well as the adoption of simplified, membraneless reactor architectures. The comprehensive Technology Readiness Level (TRL) assessment places the system at TRL 3–4. However, scaling this technology from the laboratory to industrial application presents considerable challenges. We conclude that bridging the gap to pilot-scale (TRL 6) requires overcoming specific engineering hurdles such as maintaining high current densities in large-scale reactors, mitigating biofouling, and optimizing various biological and physical factors affecting biohydrogen yield in fermentation and MEC systems.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"228 ","pages":"Article 110066"},"PeriodicalIF":3.7,"publicationDate":"2025-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145883666","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-31DOI: 10.1016/j.bej.2025.110064
Hongyuan Sun , Jiaqi Liu , Xuewen Gao , Kuizu Su , Rui Tang , Xinmin Zhan , Zhen-Hu Hu
Dry anaerobic digestion (AD) is a promising technology for pig manure treatment, yet it is challenged by ammonia inhibition. Magnesium salt addition promotes the formation of magnesium ammonium phosphate (MAP), which in-situ captures ammonia nitrogen and mitigates inhibition, while high solids content limits MAP crystallization. This study evaluated the effect of magnesium salt pretreatment of wheat straw on dry AD of pig manure. Four Mg:P molar ratios (1.0:1.0, 1.5:1.0, 2.0:1.0, and 3.0:1.0) were investigated. Adding magnesium salt-pretreated wheat straw under molar ratios of 1.0:1.0 and 1.5:1.0 captured 14.3–14.4 % of ammonia nitrogen and reduced free ammonia by 19.0–19.1 %. Methane production increased by 15.0–19.2 % and substrate degradation by 8.4–8.6 %. Such pretreatment promoted MAP nucleation and growth on the straw surface, facilitating ammonia nitrogen capture. The capture of ammonia nitrogen restored the abundance of acetoclastic methanogens from 7.3 % to 12.5 %, thereby enhancing methane production. These results provide a practical strategy for mitigating ammonia inhibition in dry AD of pig manure.
{"title":"Enhancing dry anaerobic digestion of pig manure via in-situ ammonia capture by adding magnesium salt-pretreated wheat straw","authors":"Hongyuan Sun , Jiaqi Liu , Xuewen Gao , Kuizu Su , Rui Tang , Xinmin Zhan , Zhen-Hu Hu","doi":"10.1016/j.bej.2025.110064","DOIUrl":"10.1016/j.bej.2025.110064","url":null,"abstract":"<div><div>Dry anaerobic digestion (AD) is a promising technology for pig manure treatment, yet it is challenged by ammonia inhibition. Magnesium salt addition promotes the formation of magnesium ammonium phosphate (MAP), which <em>in-situ</em> captures ammonia nitrogen and mitigates inhibition, while high solids content limits MAP crystallization. This study evaluated the effect of magnesium salt pretreatment of wheat straw on dry AD of pig manure. Four Mg:P molar ratios (1.0:1.0, 1.5:1.0, 2.0:1.0, and 3.0:1.0) were investigated. Adding magnesium salt-pretreated wheat straw under molar ratios of 1.0:1.0 and 1.5:1.0 captured 14.3–14.4 % of ammonia nitrogen and reduced free ammonia by 19.0–19.1 %. Methane production increased by 15.0–19.2 % and substrate degradation by 8.4–8.6 %. Such pretreatment promoted MAP nucleation and growth on the straw surface, facilitating ammonia nitrogen capture. The capture of ammonia nitrogen restored the abundance of acetoclastic methanogens from 7.3 % to 12.5 %, thereby enhancing methane production. These results provide a practical strategy for mitigating ammonia inhibition in dry AD of pig manure.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"228 ","pages":"Article 110064"},"PeriodicalIF":3.7,"publicationDate":"2025-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145923128","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-30DOI: 10.1016/j.bej.2025.110065
Fernanda de Oliveira , Caio de Azevedo Lima , Diana Cláudia Gouveia Alves Pinto , Laura Carmona Ferreira , Tais Maria Bauab , Silvio Silvério da Silva , Valéria Carvalho Santos-Ebinuma
The global rise of antimicrobial resistance highlights the urgent need for alternative bioactive compounds from sustainable sources. Fungal colorants, especially azaphilones, represent promising natural molecules due to their structural diversity, colorant properties, and biological activities. Talaromyces amestolkiae is a well-known source of Monascus-like azaphilone colorants free of mycotoxins, yet its antimicrobial potential and production dynamics remain underexplored. In this study, submerged cultivations were conducted to improve colorant production, isolate novel compounds, and assess antimicrobial activity. The effects of glucose concentration and hydrodynamic conditions, expressed through agitation, aeration, and the volumetric oxygen transfer coefficient (kLa), were investigated. The optimal condition (100 rpm, 1.0 vvm, 10 g·L⁻¹ of glucose) promoted balanced oxygen availability and carbon utilization, resulting in maximum colorant yield. Two novel purple-red azaphilone alkaloids, cis-amestolkin (1) and trans-amestolkin (2), were isolated and characterized by UV–Vis, LC-HRMS, and NMR spectroscopy. These compounds are geometric isomers of nitrogen-containing azaphilones featuring a γ-lactone ring and a unique 4-amino-6-hydroxyhexanoic acid moiety. Antimicrobial assays revealed that T. amestolkiae-derived metabolites exhibit pronounced inhibitory activity against Pseudomonas aeruginosa, Staphylococcus aureus, and Salmonella setubal, highlighting their bioactive potential . This work integrates bioprocess improvement with metabolite identification and biological evaluation, underscoring the value of fungal colorants as multifunctional, sustainable agents for industrial and pharmaceutical applications.
{"title":"Purple-red azaphilone alkaloids from Talaromyces amestolkiae showing antimicrobial activity","authors":"Fernanda de Oliveira , Caio de Azevedo Lima , Diana Cláudia Gouveia Alves Pinto , Laura Carmona Ferreira , Tais Maria Bauab , Silvio Silvério da Silva , Valéria Carvalho Santos-Ebinuma","doi":"10.1016/j.bej.2025.110065","DOIUrl":"10.1016/j.bej.2025.110065","url":null,"abstract":"<div><div>The global rise of antimicrobial resistance highlights the urgent need for alternative bioactive compounds from sustainable sources. Fungal colorants, especially azaphilones, represent promising natural molecules due to their structural diversity, colorant properties, and biological activities. <em>Talaromyces amestolkiae</em> is a well-known source of Monascus-like azaphilone colorants free of mycotoxins, yet its antimicrobial potential and production dynamics remain underexplored. In this study, submerged cultivations were conducted to improve colorant production, isolate novel compounds, and assess antimicrobial activity. The effects of glucose concentration and hydrodynamic conditions, expressed through agitation, aeration, and the volumetric oxygen transfer coefficient (k<sub>L</sub>a), were investigated. The optimal condition (100 rpm, 1.0 vvm, 10 g·L⁻¹ of glucose) promoted balanced oxygen availability and carbon utilization, resulting in maximum colorant yield. Two novel purple-red azaphilone alkaloids, <em>cis</em>-amestolkin (1) and <em>trans</em>-amestolkin (2), were isolated and characterized by UV–Vis, LC-HRMS, and NMR spectroscopy. These compounds are geometric isomers of nitrogen-containing azaphilones featuring a γ-lactone ring and a unique 4-amino-6-hydroxyhexanoic acid moiety. Antimicrobial assays revealed that <em>T. amestolkiae-</em>derived metabolites exhibit pronounced inhibitory activity against <em>Pseudomonas aeruginosa</em>, <em>Staphylococcus aureus</em>, and <em>Salmonella setubal</em>, highlighting their bioactive potential . This work integrates bioprocess improvement with metabolite identification and biological evaluation, underscoring the value of fungal colorants as multifunctional, sustainable agents for industrial and pharmaceutical applications.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"228 ","pages":"Article 110065"},"PeriodicalIF":3.7,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145923135","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Very-high-gravity (VHG) fermentation increases ethanol yield and decreases water use, but it imposes severe osmotic and ethanolic stress on Saccharomyces cerevisiae, which frequently limits overall productivity. In situ ethanol removal through CO2 gas stripping can mitigate this inhibition. However, the optimal timing for stripping onset under different temperature conditions remains not fully characterized. This study examined the effect of stripping initiation timing in VHG fed-batch fermentations at 28, 30, 32, and 34°C. A mechanistic fermentation model based on Monod-type kinetics with ethanol inhibition terms and coupled gas-liquid mass transfer was estimated using differential evolution. Distinct, temperature-specific ethanol concentration thresholds for stripping onset were identified, which maximized ethanol productivity (). Plateau analysis, based on identification of concentration regions where delayed initiation produced negligible changes in , refined these thresholds to within ±0.5 % of the maximum productivity. This resulted in CO2 gas savings equivalent to 1.05 ± 0.06 h per fermentation cycle. Model-based time-varying temperature control optimization predicted an increase in ethanol productivity to 12.32 g L⁻1 h⁻1. The findings provide a simulation and parameter estimation framework for temperature-integrated extractive control strategies to improve ethanol production in high-biomass VHG fermentations.
非常高重力(VHG)发酵提高了乙醇产量,减少了水的使用,但它对酿酒酵母施加了严重的渗透和乙醇压力,这往往限制了总体生产力。通过CO2气提原位去除乙醇可以减轻这种抑制作用。然而,在不同温度条件下,汽提开始的最佳时机尚未完全确定。本研究考察了在28、30、32和34℃条件下VHG补料分批发酵中剥离起始时间的影响。利用微分演化方法估计了一个基于monod型动力学、乙醇抑制项和气液耦合传质的机制发酵模型。确定了不同的温度特异性乙醇浓度阈值,以最大化乙醇生产率(PCE)。平台分析,基于识别延迟起始产生可忽略不计的PCE变化的浓度区域,将这些阈值细化到最大生产力的±0.5%以内。这导致二氧化碳气体节省相当于1.05±0.06小时每个发酵周期。基于模型的时变温度控制优化预测乙醇产量将增加到12.32 g L - 1 h - 1。研究结果为温度集成萃取控制策略提供了模拟和参数估计框架,以提高高生物量VHG发酵的乙醇产量。
{"title":"Model-based optimization of stripping onset in Saccharomyces cerevisiae very-high-gravity ethanol fermentations","authors":"I.I.K. Veloso , V.T. Mazziero , D.A. Lemos , A.J.G. Cruz , M.O. Cerri , A.C. Badino","doi":"10.1016/j.bej.2025.110057","DOIUrl":"10.1016/j.bej.2025.110057","url":null,"abstract":"<div><div>Very-high-gravity (VHG) fermentation increases ethanol yield and decreases water use, but it imposes severe osmotic and ethanolic stress on <em>Saccharomyces cerevisiae</em>, which frequently limits overall productivity. In situ ethanol removal through CO<sub>2</sub> gas stripping can mitigate this inhibition. However, the optimal timing for stripping onset under different temperature conditions remains not fully characterized. This study examined the effect of stripping initiation timing in VHG fed-batch fermentations at 28, 30, 32, and 34°C. A mechanistic fermentation model based on Monod-type kinetics with ethanol inhibition terms and coupled gas-liquid mass transfer was estimated using differential evolution. Distinct, temperature-specific ethanol concentration thresholds for stripping onset were identified, which maximized ethanol productivity (<span><math><msub><mrow><mi>P</mi></mrow><mrow><mi>CE</mi></mrow></msub></math></span>). Plateau analysis, based on identification of concentration regions where delayed initiation produced negligible changes in <span><math><msub><mrow><mi>P</mi></mrow><mrow><mi>CE</mi></mrow></msub></math></span>, refined these thresholds to within ±0.5 % of the maximum productivity. This resulted in CO<sub>2</sub> gas savings equivalent to 1.05 ± 0.06 h per fermentation cycle. Model-based time-varying temperature control optimization predicted an increase in ethanol productivity to 12.32 g L⁻<sup>1</sup> h⁻<sup>1</sup>. The findings provide a simulation and parameter estimation framework for temperature-integrated extractive control strategies to improve ethanol production in high-biomass VHG fermentations.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"227 ","pages":"Article 110057"},"PeriodicalIF":3.7,"publicationDate":"2025-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145880162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-22DOI: 10.1016/j.bej.2025.110054
Zhiwei Zhu , Yahui Li , Junyong He , Yulian Li , Peidong Hong , Chao Xie , Zijian Wu , Jiandong Lu , Dandan Yang , Lingtao Kong
This study developed an iron-carbon enhanced constructed wetland-microbial fuel cell (ICCW-MFC) to treat real rural greywater with high COD/TN ratios (13.1–16.0). The ICCW-MFC significantly improved pollutant removal, especially under extended hydraulic retention time (HRT), increasing removal efficiencies by 19.4 % (COD), 16.5 % (TN), 20.7 % (NH₄⁺-N), and 13.6 % (TP). The ICCW-MFC consistently produced higher quality effluent, with average reductions of 5.1 % (COD), 4.5 % (TN), 7.3 % (NH₄⁺-N), and 5.5 % (TP) compared to the control. Bioenergy recovery was substantially boosted, with a 2.8-fold higher current density and an 8-fold greater maximum power density compared to a conventional CW-MFC (lab control). Microbial diversity increased significantly (P < 0.001) at the anode, enriching electroactive genera (e.g., Geobacter) and forming a synergistic degradation network. PCA identified HRT as the dominant operational factor, while 3D-EEM confirmed effective degradation of tryptophan-like organics. The ICCW-M demonstrates promise for decentralized greywater treatment with concurrent energy recovery.
{"title":"Iron-carbon enhanced CW-MFC for treating high COD/TN rural greywater: Performance and microbial synergy in bioenergy recovery","authors":"Zhiwei Zhu , Yahui Li , Junyong He , Yulian Li , Peidong Hong , Chao Xie , Zijian Wu , Jiandong Lu , Dandan Yang , Lingtao Kong","doi":"10.1016/j.bej.2025.110054","DOIUrl":"10.1016/j.bej.2025.110054","url":null,"abstract":"<div><div>This study developed an iron-carbon enhanced constructed wetland-microbial fuel cell (ICCW-MFC) to treat real rural greywater with high COD/TN ratios (13.1–16.0). The ICCW-MFC significantly improved pollutant removal, especially under extended hydraulic retention time (HRT), increasing removal efficiencies by 19.4 % (COD), 16.5 % (TN), 20.7 % (NH₄⁺-N), and 13.6 % (TP). The ICCW-MFC consistently produced higher quality effluent, with average reductions of 5.1 % (COD), 4.5 % (TN), 7.3 % (NH₄⁺-N), and 5.5 % (TP) compared to the control. Bioenergy recovery was substantially boosted, with a 2.8-fold higher current density and an 8-fold greater maximum power density compared to a conventional CW-MFC (lab control). Microbial diversity increased significantly (P < 0.001) at the anode, enriching electroactive genera (e.g., <em>Geobacter</em>) and forming a synergistic degradation network. PCA identified HRT as the dominant operational factor, while 3D-EEM confirmed effective degradation of tryptophan-like organics. The ICCW-M demonstrates promise for decentralized greywater treatment with concurrent energy recovery.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"227 ","pages":"Article 110054"},"PeriodicalIF":3.7,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145836648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-20DOI: 10.1016/j.bej.2025.110053
Irnia Nurika , Eka Nur Shabrina , Nurul Azizah , Sri Suhartini , Guy C. Barker , Timothy D.H. Bugg
This study assesses the facultative anaerobe Comamonas testosteroni as a mild, chemical-free pre-treatment for valorising oil palm empty fruit bunches (OPEFB) into biomethane and lignin-derived aromatics. Incubation with 2 % (v/v) C. testosteroni for 7 days at 30 °C, reduced lignin to 15.67 % (33.42 % removal), while retaining high cellulose (53.48–56.19 %) and hemicellulose (up to 16.21 %). Pre-treated OPEFB showed 20 % weight loss (vs 8 % in controls) and a 51 % rise in total soluble phenols, evidencing active lignin depolymerisation. GC–MS of liquor and solids qualitatively confirmed lignin breakdown and identified representative low-molecular-weight products (e.g., phenol, betulin, acetic acid and benzoxazole), supporting co-product potential. In biochemical methane potential tests, the pre-treated residue achieved a specific methane potential of 0.173 m³ CH4 kg⁻¹ VS, an 85 % increase over the abiotic residue and higher than non-treated OPEFB. Kinetic fitting with Transference, Modified Gompertz and Logistic models yielded good agreement (R2 up to 0.92), with Modified Gompertz best capturing cumulative methane production and the shortest lag phases. A simple energy check indicates a favourable margin: the incremental methane (ΔSMP ≈ 0.08 m³ CH₄ kg⁻¹ VS) equates ∼0.8 kWh kg⁻¹ VS, whereas estimated mixing for pre-treatment is ∼0.017–0.034 kWh kg⁻¹ VS. Overall C. testosteroni pre-treatment enables dual valorisation (biomethane plus aromatics) under mesophilic conditions, offering a practical route for integrated OPEFB biorefineries.
{"title":"Bioconversion kinetics and valorisation of oil palm empty fruit bunches for biomethane production and lignin derived compounds","authors":"Irnia Nurika , Eka Nur Shabrina , Nurul Azizah , Sri Suhartini , Guy C. Barker , Timothy D.H. Bugg","doi":"10.1016/j.bej.2025.110053","DOIUrl":"10.1016/j.bej.2025.110053","url":null,"abstract":"<div><div>This study assesses the facultative anaerobe <em>Comamonas testosteroni</em> as a mild, chemical-free pre-treatment for valorising oil palm empty fruit bunches (OPEFB) into biomethane and lignin-derived aromatics. Incubation with 2 % (v/v) <em>C. testosteroni</em> for 7 days at 30 °C, reduced lignin to 15.67 % (33.42 % removal), while retaining high cellulose (53.48–56.19 %) and hemicellulose (up to 16.21 %). Pre-treated OPEFB showed 20 % weight loss (vs 8 % in controls) and a 51 % rise in total soluble phenols, evidencing active lignin depolymerisation. GC–MS of liquor and solids qualitatively confirmed lignin breakdown and identified representative low-molecular-weight products (e.g., phenol, betulin, acetic acid and benzoxazole), supporting co-product potential. In biochemical methane potential tests, the pre-treated residue achieved a specific methane potential of 0.173 m³ CH<sub>4</sub> kg⁻¹ VS, an 85 % increase over the abiotic residue and higher than non-treated OPEFB. Kinetic fitting with Transference, Modified Gompertz and Logistic models yielded good agreement (R<sup>2</sup> up to 0.92), with Modified Gompertz best capturing cumulative methane production and the shortest lag phases. A simple energy check indicates a favourable margin: the incremental methane (ΔSMP ≈ 0.08 m³ CH₄ kg⁻¹ VS) equates ∼0.8 kWh kg⁻¹ VS, whereas estimated mixing for pre-treatment is ∼0.017–0.034 kWh kg⁻¹ VS. Overall <em>C. testosteroni</em> pre-treatment enables dual valorisation (biomethane plus aromatics) under mesophilic conditions, offering a practical route for integrated OPEFB biorefineries.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"227 ","pages":"Article 110053"},"PeriodicalIF":3.7,"publicationDate":"2025-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145836647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}