Phosphorus (P) deficiency is a serious abiotic constraint which affected plant cellular homeostasis, especially in tropical areas with highly acidic soil and less solubility P, which affects of oil palm productivity. Studies for increasing P uptake efficiency in oil palms were necessary. One of the strategies that could be applied is the development of molecular markers that could be used for the selection of more efficient oil palm genetic materials. Candidate genes used in this study were selected from transcriptomic data of a P trial elaborated from the oil palm genome project. Two genes, namely EgPap3 and EgPti1 were selected, and their response to varying P dosages in oil palm clones were investigated. This study aimed was to obtain both morphological responses and expression of these two genes using selected clones under P-limitation conditions. In the current work, three-month-old prolific and non-prolific clones were grown hydroponically and maintained under three P dosages for 180 days, namely P-starvation (P1), P-deficiency (P2), and P-optimum (P3). A commercial internal standard cross (DxP) was used as a control. The P dosages were referred to the internal procedure for oil palm seedlings in main nursery stage. A total of nine quantitative and three functional parameters including biomass, P-content, and leaf chlorophyll were observed. Gene expression was measured from leaves and root samples using the RT-qPCR approach after 180 days after treatment (DAT). The results showed that prolific and non-prolific clone, the prolific and standard genotype and non-prolific and standard genotype was different in 10, 9 and 5 parameters, respectively. Biomass and leaf number were two parameters that showed similar response for three genotypes tested. The EgPti1 expression of the prolific was higher than non-prolific and standard genotype at both P-starvation and deficiency in roots and leaves at 180 DAT. A similar pattern was observed in EgPap3 expression. EgPap3 expression in leaf of prolific was higher than in root at both P1 and P2 treatment. An association study based on OPLS-DA analysis showed that the prolific clone was completely separated from non-prolific and standard genotype at different phosphorus.
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