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Deep eutectic solvents assisted laccase pretreatment for improving enzymatic hydrolysis of corn stover. 深层共晶溶剂辅助漆酶预处理,改善玉米秸秆的酶水解。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-15 DOI: 10.1007/s00449-024-03102-4
Kexin Lin, Weiting Zhang, Xinyang Fan, Xiaoyan Li, Nuomeng Wang, Shuyu Yu, Lei Lu

The efficient and eco-friendly removal of lignin is a critical challenge for bioethanol production from lignocellulosic biomass. Herein, we report the integration of laccase with deep eutectic solvents (DESs) for the pretreatment of corn stover to enhance the production of reducing sugars. Three betaine-based DESs were prepared and tested for their effects on the activity and stability of a bacterial laccase from Bacillus amyloliquefaciens LC02. The aqueous solution of DESs showed no adverse influence on laccase activity, and the laccase thermostability was improved in the presence of DESs. More than 95% of the laccase activity was retained in the DESs solution during the first hour of incubation at 70 °C. A red shift in the fluorescence spectra was observed for the laccase in the presence of DESs, indicating conformational changes. The laccase was able to degrade a dimeric lignin model compound by cleaving its β-O-4 bond. The transformation products were identified using LC-MS. The maximal lignin removal from corn stover was achieved by pretreatment using laccase in combination with the betaine-glycerol DES, which also resulted in a yield of fermentable sugar that was 130% higher than the control. This combination strategy provides guidance on the application of laccase and DESs in the pretreatment of lignocellulosic biomass.

高效、环保地去除木质素是利用木质纤维素生物质生产生物乙醇的关键挑战。在此,我们报告了将漆酶与深共晶溶剂(DES)结合用于玉米秸秆预处理以提高还原糖产量的方法。我们制备了三种甜菜碱基 DES,并测试了它们对来自淀粉芽孢杆菌 LC02 的细菌漆酶的活性和稳定性的影响。结果表明,DESs水溶液对漆酶活性没有不良影响,而且在DESs存在的情况下,漆酶的热稳定性得到了改善。在 70 °C 下培养的第一个小时内,DESs 溶液中保留了超过 95% 的漆酶活性。在有DESs存在的情况下,可以观察到漆酶的荧光光谱发生了红移,表明其构象发生了变化。漆酶能够通过裂解二聚木质素模型化合物的 β-O-4 键来降解该化合物。利用 LC-MS 对转化产物进行了鉴定。使用漆酶结合甜菜碱-甘油 DES 进行预处理,可以最大程度地去除玉米秸秆中的木质素,其可发酵糖的产量比对照组高出 130%。这种组合策略为漆酶和 DES 在木质纤维素生物质预处理中的应用提供了指导。
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引用次数: 0
Utilization of palm sludge oil for rhamnolipid biosynthesis by Pseudomonas aeruginosa USM-AR2 in a stirred tank reactor. 铜绿假单胞菌 USM-AR2 在搅拌罐反应器中利用棕榈污泥油进行鼠李糖脂生物合成。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-13 DOI: 10.1007/s00449-024-03103-3
Mohd Shafiq Nasir, Ahmad Ramli Mohd Yahya, Nur Asshifa Md Noh

The study focused on rhamnolipid production by batch fermentation of Pseudomonas aeruginosa USM-AR2 in a 3-L stirred-tank reactor (STR) using palm sludge oil (PSO) as the sole carbon source. The impact of various agitation rates towards the dispersion of PSO in the medium was evaluated to improve biomass growth and rhamnolipid production. A mechanical foam collection and recycling system was designed and retrofitted to the STR to overcome severe foam formation during fermentation. The maximum biomass produced was 11.29 ± 0.20 g/L obtained at 400 rpm, while the maximum rhamnolipid production was 5.06 ± 1.17 g/L at 600 rpm, giving a rhamnolipid productivity of 0.023 g/L/h. High agitation enhances substrate availability by breaking the hydrophobic semi-solid PSO into smaller substrate particles, increasing surface contact area, thus facilitating the PSO utilisation by P. aeruginosa USM-AR2, thereby inducing rhamnolipid production. This study further demonstrates the ability of rhamnolipid to solubilize and disperse sludge oil, which typically remains a solid at room temperature, in the liquid medium. GCMS analysis showed that five fatty acids, namely palmitic acid, myristic acid, stearic acid, methyl ester and linoleic acid, have been utilised. The rhamnolipid showed an oil spreading test result of 160 mm of waste engine oil displacement compared to control using distilled water that remained non-displaced, and a critical micelle concentration (CMC) of 17 mg/L. In emulsification index (E24) assay, the rhamnolipid was shown to emulsify toluene (66.7% ± 7.2), waste engine oil (58.3% ± 7.2), kerosene (41.8% ± 4.8) and n-hexane (33.1% ± 5.7). UPLC analysis on rhamnolipid revealed a congener mixture of rhamnolipid, namely di-rhamnolipid and mono-rhamnolipid mixture. This is the first report on the employment of an integrated foam control reactor system with PSO as the carbon source for rhamnolipid production by P. aeruginosa USM-AR2 culture.

本研究的重点是以棕榈污泥油(PSO)为唯一碳源,在 3 升搅拌槽反应器(STR)中通过铜绿假单胞菌 USM-AR2 的批量发酵生产鼠李糖脂。评估了各种搅拌速率对 PSO 在培养基中分散的影响,以改善生物质的生长和鼠李糖脂的生产。设计并在 STR 上加装了一个机械泡沫收集和循环系统,以克服发酵过程中形成的严重泡沫。在转速为 400 rpm 时,生物量的最大产量为 11.29 ± 0.20 克/升,而在转速为 600 rpm 时,鼠李糖脂的最大产量为 5.06 ± 1.17 克/升,鼠李糖脂的生产率为 0.023 克/升/小时。高搅动可将疏水性半固态 PSO 打碎成更小的基质颗粒,增加表面接触面积,从而提高基质的可用性,促进铜绿微囊藻 USM-AR2 对 PSO 的利用,进而诱导鼠李糖脂的产生。这项研究进一步证明了鼠李糖脂在液体介质中溶解和分散污泥油的能力,污泥油在室温下通常是固体。GCMS 分析表明,五种脂肪酸,即棕榈酸、肉豆蔻酸、硬脂酸、甲酯和亚油酸得到了利用。鼠李糖脂的铺油试验结果表明,与使用蒸馏水的对照组相比,废机油的铺油量为 160 毫米,临界胶束浓度(CMC)为 17 毫克/升。在乳化指数(E24)测定中,鼠李糖脂对甲苯(66.7% ± 7.2)、废机油(58.3% ± 7.2)、煤油(41.8% ± 4.8)和正己烷(33.1% ± 5.7)均有乳化作用。鼠李糖脂的超高效液相色谱分析显示了鼠李糖脂的同系物混合物,即二鼠李糖脂和单鼠李糖脂混合物。这是首次报道铜绿微囊藻 USM-AR2 培养物利用以 PSO 为碳源的综合泡沫控制反应器系统生产鼠李糖脂。
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引用次数: 0
Efficient one-pot green synthesis of carboxymethyl cellulose/folic acid embedded ultrafine CeO2 nanocomposite and its superior multi-drug resistant antibacterial activity and anticancer activity. 羧甲基纤维素/叶酸包埋超细CeO2纳米复合材料的高效一锅法绿色合成及其优异的耐多药抗菌活性和抗癌活性。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-06 DOI: 10.1007/s00449-024-03097-y
Thalakulam Shanmugam Boopathi, Asha Rajiv, T S Geetika Madan Patel, Lakshay Bareja, Saleh H Salmen, Hossam M Aljawdah, Palanisamy Arulselvan, Jagadeesh Suriyaprakash, Indumathi Thangavelu

Due to the prevalence of drug-resistant bacteria and the ongoing shortage of novel antibiotics as well as the challenge of treating breast cancer, the therapeutic and clinical sectors are consistently seeking effective nanomedicines. The incorporation of metal oxide nanoparticles with biological macromolecules and an organic compound emerges as a promising strategy to enhance breast cancer treatment and antibacterial activity against drug-resistant bacteria in various biomedical applications. This study aims to synthesize a unique nanocomposite consisting of CeO2 embedded with folic acid and carboxymethyl cellulose (CFC NC) via a green precipitation method using Moringa oleifera. Various spectroscopic and microscopic analyses are utilized to decipher the physicochemical characteristics of CFC NC and active phytocompounds of Moringa oleifera. Antibacterial study against MRSA (Methicillin-resistant Staphylococcus aureus) demonstrated a higher activity (95.6%) for CFC NC compared to its counterparts. The impact is attributed to reactive oxygen species (ROS), which induces a strong photo-oxidative stress, leading to the destruction of bacteria. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of CFC NC are determined as 600 µg/mL and 1000 µg/mL, respectively. The anticancer activity against breast cancer cell resulted in the IC50 concentration of 10.8 μg/mL and 8.2 μg/mL for CeO2 and CFC NC respectively.The biocompatibility test was conducted against fibroblast cells and found 85% of the cells viable, with less toxicity. Therefore, the newly synthesized CFC NC has potential applications in healthcare and industry, enhancing human health conditions.

由于耐药细菌的普遍存在、新型抗生素的持续短缺以及治疗乳腺癌的挑战,治疗和临床部门一直在寻求有效的纳米药物。在各种生物医学应用中,将金属氧化物纳米粒子与生物大分子和有机化合物结合在一起是一种很有前景的策略,可以提高乳腺癌的治疗效果和对耐药细菌的抗菌活性。本研究旨在利用油杉,通过绿色沉淀法合成一种独特的纳米复合材料,由嵌入叶酸和羧甲基纤维素(CFC NC)的 CeO2 组成。利用各种光谱和显微镜分析来解读 CFC NC 和油杉活性植物化合物的理化特性。针对 MRSA(耐甲氧西林金黄色葡萄球菌)的抗菌研究表明,与同类产品相比,CFC NC 的活性更高(95.6%)。这种影响归因于活性氧(ROS),它诱发了强烈的光氧化应激,导致细菌的破坏。CFC NC 的最低抑菌浓度(MIC)和最低杀菌浓度(MBC)分别为 600 微克/毫升和 1000 微克/毫升。在对乳腺癌细胞的抗癌活性测试中,CeO2 和 CFC NC 的 IC50 浓度分别为 10.8 μg/mL 和 8.2 μg/mL。因此,新合成的 CFC NC 有可能应用于医疗保健和工业领域,改善人类的健康状况。
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引用次数: 0
Discovery and investigation of the truncation of the (GGGGS)n linker and its effect on the productivity of bispecific antibodies expressed in mammalian cells. 发现并研究(GGGGS)n连接体的截断及其对哺乳动物细胞中表达的双特异性抗体生产率的影响。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-03 DOI: 10.1007/s00449-024-03100-6
Yan Fang, Xi Chen, Zhen Sun, Xiaodan Yan, Lani Shi, Congcong Jin

Protein engineering is a powerful tool for designing or modifying therapeutic proteins for enhanced efficacy, increased safety, reduced immunogenicity, and improved delivery. Fusion proteins are an important group of therapeutic compounds that often require an ideal linker to combine diverse domains to fulfill the desired function. GGGGS [(G4S)n] linkers are commonly used during the engineering of proteins because of their flexibility and resistance to proteases. However, unexpected truncation was observed in the linker of a bispecific antibody, which presented challenges in terms of production and quality. In this work, a bispecific antibody containing 5*G4S was investigated, and the truncation position of the linkers was confirmed. Our investigation revealed that codon optimization, which can overcome the negative influence of a high repetition rate and high GC content in the (G4S)n linker, may reduce the truncation rate from 5-10% to 1-5%. Moreover, the probability of truncation when a shortened 3* or 4*G4S linker was used was much lower than that when a 5*G4S linker was used in mammalian cells. In the case of expressing a bispecific antibody, the bioactivity and purity of the product containing a shorter G4S linker were further investigated and are discussed.

蛋白质工程是设计或改造治疗蛋白质以增强疗效、提高安全性、降低免疫原性和改进给药方式的有力工具。融合蛋白是一类重要的治疗化合物,通常需要一个理想的连接体来结合不同的结构域以实现所需的功能。GGGGS [(G4S)n] 连接体因其灵活性和对蛋白酶的耐受性而常用于蛋白质工程。然而,在双特异性抗体的连接体中发现了意想不到的截断,这给生产和质量带来了挑战。本研究对含有 5*G4S 的双特异性抗体进行了研究,并确认了连接子的截断位置。我们的研究发现,密码子优化可以克服(G4S)n 连接子中高重复率和高 GC 含量的负面影响,可将截断率从 5-10% 降低到 1-5%。此外,在哺乳动物细胞中使用缩短的 3* 或 4*G4S 连接子时,截断的概率要比使用 5*G4S 连接子时低得多。在表达双特异性抗体的情况下,对含有较短 G4S 连接子的产品的生物活性和纯度进行了进一步研究和讨论。
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引用次数: 0
Chitosan-coated manganese ferrite nanoparticles enhanced Rhodotorula toruloides carotenoid production. 壳聚糖包覆的锰铁氧体纳米颗粒提高了类胡萝卜素的产量。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-08-02 DOI: 10.1007/s00449-024-03068-3
Nayra Ochoa-Viñals, Dania Alonso-Estrada, Rodolfo Ramos-González, Joelis Rodríguez-Hernández, José Luis Martínez-Hernández, Miguel Ángel Aguilar-González, Rebeca Betancourt-Galindo, Georgina Lourdes Michelena-Álvarez, Anna Ilina

The present study aims to analyze the interaction between Rhodotorula toruloides and magnetic nanoparticles and evaluate their effect on carotenoid production. The manganese ferrite nanoparticles were synthesized without chitosan (MnFe2O4) and chitosan coating (MnFe2O4-CS) by the co-precipitation method assisted by hydrothermal treatment. XRD (X-ray diffraction), Magnetometry, Dynamic Light Scattering (DLS) and FTIR (Fourier-Transform Infrared Spectroscopy), are used to characterize the magnetic nanoparticles. The crystallite size of MnFe2O4 was 16 nm for MnFe2O4 and 20 nm for MnFe2O4-CS. The magnetic saturation of MnFe2O4-CS was lower (39.6 ± 0.6 emu/g) than the same MnFe2O4 nanoparticles (42.7 ± 0.3 emu/g), which was attributed to the chitosan fraction presence. The MnFe2O4-CS FTIR spectra revealed the presence of the characteristic chitosan bands. DLS demonstrated that the average hydrodynamic diameters were 344 nm for MnFe2O4 and 167 nm for MnFe2O4-CS. A kinetic study of cell immobilization performed with their precipitation with a magnet demonstrated that interaction between magnetic nanoparticles and R. toruloides was characterized by an equilibrium time of 2 h. The adsorption isotherm models (Langmuir and Freundlich) were fitted to the experimental values. The trypan blue assay was used for cell viability assessment. The carotenoid production increased to 256.2 ± 6.1 µg/g dry mass at 2.0 mg/mL MnFe2O4-CS. The use of MnFe2O4-CS to stimulate carotenoid yeast production and the magnetic separation of biomass are promising nanobiotechnological alternatives. Magnetic cell immobilization is a perspective technique for obtaining cell metabolites.

本研究的目的是分析红豆杉与磁性纳米粒子之间的相互作用,并评估它们对类胡萝卜素生产的影响。通过共沉淀法和水热处理合成了不含壳聚糖的锰铁氧体纳米粒子(MnFe2O4)和壳聚糖包覆的锰铁氧体纳米粒子(MnFe2O4-CS)。XRD (X 射线衍射)、磁力测定法、动态光散射(DLS)和 FTIR(傅立叶变换红外光谱)用于表征磁性纳米粒子。MnFe2O4 的晶粒大小为 16 nm,MnFe2O4-CS 为 20 nm。MnFe2O4-CS 的磁饱和度(39.6 ± 0.6 emu/g)低于相同的 MnFe2O4 纳米粒子(42.7 ± 0.3 emu/g),这归因于壳聚糖成分的存在。MnFe2O4-CS 的傅立叶变换红外光谱显示了壳聚糖的特征谱带。DLS 显示,MnFe2O4 和 MnFe2O4-CS 的平均流体力学直径分别为 344 nm 和 167 nm。用磁铁沉淀细胞后进行的细胞固定动力学研究表明,磁性纳米粒子与 R. toruloides 之间的相互作用以 2 小时的平衡时间为特征。细胞活力评估采用胰蓝检测法。在 2.0 mg/mL MnFe2O4-CS 的条件下,类胡萝卜素的产量增加到 256.2 ± 6.1 µg/g 干重。使用 MnFe2O4-CS 促进类胡萝卜素酵母的生产和生物质的磁性分离是很有前景的纳米生物技术替代方法。磁性细胞固定是获得细胞代谢物的一种前景广阔的技术。
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引用次数: 0
Green synthesis of copper oxide nanoparticles via Moringa peregrina extract incorporated in graphene oxide: evaluation of antibacterial and anticancer efficacy. 通过含有氧化石墨烯的辣木提取物绿色合成氧化铜纳米颗粒:抗菌和抗癌功效评估。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-08-10 DOI: 10.1007/s00449-024-03077-2
Mahmood Barani, Amirabbas Mir, Maryam Roostaee, Ghasem Sargazi, Mahboubeh Adeli-Sardou

This research investigated the physicochemical properties and biological activities of green-synthesized copper oxide nanoparticles (CuO NPs) via Moringa peregrina extract, graphene oxide (GO), and their composite (CuO-GO). SEM revealed the morphology and structure, indicating polygonal CuO NPs, thin wrinkled sheets of GO, and a combination of CuO NPs and GO in the nanocomposite. EDS confirmed the elemental composition and distribution. XRD analysis confirmed the crystalline monoclinic structure of CuO NPs and GO, as well as their composite, CuO-GO, with characteristic peaks. DLS analysis exhibited distinct size distributions, with CuO NPs showing the narrowest range. BET surface area analysis revealed mesoporous structures for all materials, with the nanocomposite showing enhanced surface area and pore volume. Anticancer assays on MCF-7 and normal NIH/3T3 cells demonstrated CuO-GO's superior cytotoxicity against cancer cells, with minimal effects on normal cells, suggesting selective cytotoxicity. Moreover, antibacterial assays against Pseudomonas aeruginosa and Staphylococcus aureus indicated CuO-GO's potent inhibitory activity. The composite's synergistic effects were evidenced by its lower minimum inhibitory concentration (MIC) compared to individual components. In conclusion, this study elucidated the promising biomedical applications of CuO NPs, GO, and their nanocomposite, particularly in cancer treatment and antibacterial therapies, showcasing their potential as multifunctional nanomaterials.

本研究探讨了通过辣木提取物绿色合成的氧化铜纳米粒子(CuO NPs)、氧化石墨烯(GO)及其复合材料(CuO-GO)的理化性质和生物活性。扫描电子显微镜显示了其形态和结构,表明纳米复合材料中存在多边形的 CuO NPs、起皱的薄片 GO 以及 CuO NPs 和 GO 的组合。EDS 证实了元素的组成和分布。XRD 分析证实了 CuO NPs 和 GO 以及它们的复合材料 CuO-GO 的结晶单斜结构,并出现了特征峰。DLS 分析显示了不同的尺寸分布,其中 CuO NPs 的尺寸范围最窄。BET 表面积分析表明,所有材料都具有介孔结构,纳米复合材料的表面积和孔体积都有所增加。对 MCF-7 细胞和正常 NIH/3T3 细胞进行的抗癌实验表明,CuO-GO 对癌细胞的细胞毒性更强,而对正常细胞的影响极小,这表明它具有选择性细胞毒性。此外,针对铜绿假单胞菌和金黄色葡萄球菌的抗菌试验表明,CuO-GO 具有强大的抑制活性。与单个成分相比,复合材料的最低抑菌浓度(MIC)更低,这证明了复合材料的协同效应。总之,本研究阐明了 CuO NPs、GO 及其纳米复合材料具有广阔的生物医学应用前景,尤其是在癌症治疗和抗菌疗法方面,展示了它们作为多功能纳米材料的潜力。
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引用次数: 0
Performance of a pilot-scale microbial electrolysis cell coupled with biofilm-based reactor for household wastewater treatment: simultaneous pollutant removal and hydrogen production. 用于家庭废水处理的中试规模微生物电解池与生物膜反应器的性能:同时去除污染物和制氢。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-08-17 DOI: 10.1007/s00449-024-03079-0
Edson Baltazar Estrada-Arriaga, Raúl Montero-Farías, Cornelio Morales-Morales, Liliana García-Sánchez, Axel Falcón-Rojas, Marco A Garzón-Zúñiga, Tania Gutierrez-Macias

The septic tank is the most commonly used decentralized wastewater treatment systems for household wastewater treatment in on-site applications. The removal rate of various pollutants is lower in different septic tank configurations. The integration of a microbial electrolysis cells (MEC) into septic tank or biofilm-based reactors can be a green and sustainable technology for household wastewater treatment and energy production. In this study, a 50-L septic tank was converted into a 50-L MEC coupled with biofilm-based reactor for simultaneous household wastewater treatment and hydrogen production. The biofilm-based reactor was integrated by an anaerobic packed-bed biofilm reactor (APBBR) and an aerobic moving bed biofilm reactor (aeMBBR). The MEC/APBBR/aeMBBR was evaluated at different organic loading rates (OLRs) by applying voltage of 0.7 and 1.0 V. Result showed that the increase of OLRs from 0.2 to 0.44 kg COD/m3 d did not affect organic matter removals. Nutrient and solids removal decreased with increasing OLR up to 0.44 kg COD/m3 d. Global removal of chemical oxygen demand (COD), biochemical oxygen demand (BOD), total nitrogen (TN), ammoniacal nitrogen (NH4+), total phosphorus (TP) and total suspended solids (TSS) removal ranged from 81 to 84%, 84 to 85%, 53 to 68%, 88 to 98%, 11 to 30% and 76 to 88% respectively, was obtained in this study. The current density generated in the MEC from 0 to 0.41 A/m2 contributed to an increase in hydrogen production and pollutants removal. The maximum volumetric hydrogen production rate obtained in the MEC was 0.007 L/L.d (0.072 L/d). The integration of the MEC into biofilm-based reactors applying a voltage of 1.0 V generated different bioelectrochemical nitrogen and phosphorus transformations within the MEC, allowing a simultaneous denitrification-nitrification process with phosphorus removal.

化粪池是最常用的分散式污水处理系统,用于现场处理家庭污水。在不同的化粪池配置中,各种污染物的去除率较低。将微生物电解池(MEC)集成到化粪池或生物膜反应器中,可以成为一种绿色、可持续的家庭污水处理和能源生产技术。本研究将一个 50 升的化粪池改造成了一个 50 升的微生物电解池,并与生物膜反应器相结合,用于同时处理家庭废水和制氢。生物膜反应器由厌氧填料床生物膜反应器(APBBR)和好氧移动床生物膜反应器(aeMBBR)集成。通过施加 0.7 和 1.0 V 的电压,在不同的有机负荷率(OLR)下对 MEC/APBBR/aeMBBR 进行了评估。结果表明,有机负荷率从 0.2 kg COD/m3 d 增加到 0.44 kg COD/m3 d 并不影响有机物的去除。本研究获得的化学需氧量(COD)、生化需氧量(BOD)、总氮(TN)、氨氮(NH4+)、总磷(TP)和总悬浮固体(TSS)的总体去除率分别为 81%至 84%、84%至 85%、53%至 68%、88%至 98%、11%至 30%和 76%至 88%。MEC 中产生的电流密度从 0 到 0.41 A/m2 都有助于提高氢气产量和污染物去除率。在 MEC 中获得的最大体积产氢率为 0.007 L/L.d(0.072 L/d)。将 MEC 集成到基于生物膜的反应器中,施加 1.0 V 的电压,可在 MEC 中产生不同的生物电化学氮和磷转化,从而实现同时脱氮-硝化过程和除磷。
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引用次数: 0
Antimicrobial therapeutic protein extraction from fruit waste and recent trends in their utilization against infections. 从水果废料中提取抗菌治疗蛋白及其在抗感染方面的最新应用趋势。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-05-31 DOI: 10.1007/s00449-024-03037-w
Aditya Upadhyay, Dharm Pal, Prashant Kumar Gupta, Awanish Kumar

Fruits are a very good source of various nutrients that can boost overall human health. In these days, the recovery of therapeutic compounds from different fruit wastes is trending in research, which might not only minimize the waste problem but also encounter a higher demand for various enzymes that could have antimicrobial properties against infectious diseases. The goal of this review is to focus on the recovery of therapeutic enzymes from fruit wastes and its present-day tendency for utilization. Here we discussed different parts of fruit waste, such as pulp, pomace, seed, kernel, peel, etc., that produce therapeutic enzymes like amylase, cellulose, lipase, laccase, pectinase, etc. These bioactive enzymes are present in different parts of fruit and could be used as therapeutics against various infectious diseases. This article provides a thorough knowledge compilation of therapeutic enzyme isolation from fruit waste on a single platform, distinctly informative, and significant review work on the topic that is envisioned to encourage further research ideas in these areas that are still under-explored. This paper explains the various aspects of enzyme isolation from fruit and vegetable waste and their biotherapeutic potential that could provide new insights into the development of biotherapeutics and attract the attention of researchers to enhance translational research magnitude further.

水果是各种营养素的良好来源,可以促进人类的整体健康。如今,从不同的水果废料中回收治疗化合物已成为研究的趋势,这不仅可以最大限度地减少废物问题,还可以满足对各种酶的更高需求,这些酶具有抗菌特性,可预防传染性疾病。本综述的目的是关注从水果废料中回收治疗用酶及其当今的利用趋势。在这里,我们讨论了水果废料的不同部分,如果肉、果渣、种子、果核、果皮等,它们都能产生治疗酶,如淀粉酶、纤维素酶、脂肪酶、漆酶、果胶酶等。这些生物活性酶存在于水果的不同部位,可用作治疗各种传染性疾病的药物。本文对在单一平台上从水果废弃物中分离治疗性酶进行了全面的知识梳理,内容丰富,是对这一主题的重要综述,旨在鼓励在这些仍未得到充分开发的领域开展进一步的研究。本文阐述了从水果和蔬菜废弃物中分离酶的各个方面及其生物治疗潜力,可为生物治疗药物的开发提供新的见解,并吸引研究人员的注意力,进一步提升转化研究的规模。
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引用次数: 0
Swelling problems in immobilized filler: an improvement method and comparative study of the effect of different fillers on biotrickling filters. 固定填料的膨胀问题:改进方法和不同填料对生物滴滤器影响的比较研究。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-01 DOI: 10.1007/s00449-024-03101-5
Jia Liu, Qianzhu Ji, Ping Li, Shiyu Sun, Wenjun Liang

Immobilized fillers have been increasingly utilized in biotrickling filters (BTFs) due to their positive impact on shock load resistance and recovery performance. However, due to the inherent characteristics of its immobilized carrier, the immobilized filler is prone to swelling during the long-term operation of the system, resulting in increased pressure drop. Polyurethane (PU) sponge was used as the cross-linked skeleton of immobilized filler and compared with direct emulsified cross-linked immobilized filler for treating ethylbenzene gas. In the early stage, both fillers can maintain good performance despite changes in the inlet concentration and short-term stagnation. However, on the 107th day of operation, the immobilized filler experienced swelling, and the pressure drop sharply increased to 137.2 Pa, while the PU immobilized filler was still able to maintain a low-pressure drop level. The results of the microbial diversity analysis revealed that the microbial community structure of PU immobilized fillers remained relatively stable when responding to the fluctuations in operating conditions. PU sponges as the skeleton can effectively prolong the service life of the immobilized filler and improve the performance of the biotrickling filter.

由于固定填料对抗冲击负荷和恢复性能有积极影响,因此越来越多地用于生物滴滤(BTF)。然而,由于固定化载体的固有特性,固定化填料在系统长期运行过程中容易膨胀,导致压降增大。聚氨酯(PU)海绵被用作固定化填料的交联骨架,并与直接乳化交联固定化填料在处理乙苯气体方面进行了比较。在初期阶段,两种填料都能在入口浓度变化和短期停滞的情况下保持良好的性能。然而,在运行的第 107 天,固定化填料出现膨胀,压降急剧上升至 137.2 Pa,而聚氨酯固定化填料仍能保持较低的压降水平。微生物多样性分析结果表明,聚氨酯固定填料的微生物群落结构在应对运行条件波动时保持相对稳定。以聚氨酯海绵为骨架可以有效延长固定填料的使用寿命,提高生物滴滤的性能。
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引用次数: 0
Effect of microbial interactions on performance of community metabolic modeling algorithms: flux balance analysis (FBA), community FBA (cFBA) and SteadyCom. 微生物相互作用对群落代谢建模算法性能的影响:通量平衡分析(FBA)、群落通量平衡分析(cFBA)和 SteadyCom。
IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-01 Epub Date: 2024-08-24 DOI: 10.1007/s00449-024-03072-7
Maryam Afarin, Fereshteh Naeimpoor

To explore the impact of microbial interactions on outcomes from three prevalent algorithms (Flux Balance Analysis (FBA), community FBA (cFBA), and SteadyCom) analyzing microbial community metabolic networks, five toy community models representing common microbial interactions were designed. These include commensalism, mutualism, competition, mutualism-competition, and commensalism-competition. Various scenarios, considering different biomass yields and substrate constraints, were examined for each type. In commensal communities, all algorithms consistently produced similar results. However, changes in biomass yields and substrate constraints led to variable abundances (0.33-0.8) and community growth rates (2-5 1/h) within a broad range. For competitive communities, all algorithms predicted growth of fastest-growing member. To comply with the natural coexistence of members, suboptimal solutions over optimal point are recommended. FBA faced challenges in modeling mutualism, consistently predicting growth of only one member. Although cFBA and SteadyCom resulted in a lower community growth rate, coexistence of both members were satisfied. In toy models with dual interactions, more realistic outcomes were achieved contrary to purely competitive model as the dependency fosters the coexistence which was missing in the competitive only scenarios. These findings emphasize the importance of algorithm choice based on specific microbial interaction types for reliable community behavior predictions.​.

为了探索微生物相互作用对三种常用算法(通量平衡分析法(FBA)、群落通量平衡分析法(cFBA)和 SteadyCom)分析微生物群落代谢网络的结果的影响,我们设计了五个代表常见微生物相互作用的玩具群落模型。这些模型包括共生、互生、竞争、互生-竞争和共生-竞争。考虑到不同的生物量产量和底物限制,对每种类型的模型都进行了各种方案研究。在共生群落中,所有算法都得出了相似的结果。然而,生物量产量和基质限制的变化导致丰度(0.33-0.8)和群落增长率(2-5 1/h)在很大范围内变化。对于竞争性群落,所有算法都预测了生长最快的成员的生长。为了符合成员自然共存的原则,建议采用次优解而不是最优点。FBA 在模拟互生关系时面临挑战,始终只能预测一个成员的增长。虽然 cFBA 和 SteadyCom 导致了较低的群落增长率,但两个成员的共存都得到了满足。在具有双重交互作用的玩具模型中,与纯粹的竞争模型相反,由于依赖性促进了共存,因此实现了更现实的结果,而这是仅有竞争的情况下所缺少的。这些发现强调了基于特定微生物相互作用类型的算法选择对于可靠的群落行为预测的重要性。
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Bioprocess and Biosystems Engineering
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