首页 > 最新文献

Bioprocess and Biosystems Engineering最新文献

英文 中文
Synthesis of 1-cyanocyclohexaneacetic acid in a partial-mixed recirculating bed reactor with resin-immobilized nitrilase. 树脂固定化硝化酶在部分混合循环床反应器中合成1-氰环己乙酸。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-08-28 DOI: 10.1007/s00449-025-03227-0
Neng Xiong, Jia-Yu Chen, Pei-Qi Lei, Teng-Teng Fu, Rui Xu, Ya-Ping Xue, Yu-Guo Zheng

Immobilized enzyme bioreactors provide a controlled reaction environment and integrated reaction-separation processes for biocatalysis. In this study, a biocatalytic process based on resin-immobilized nitrilase and a partial-mixed recirculating bed bioreactor was developed for the synthesis of 1-cyanocyclohexaneacetic acid, a gabapentin intermediate. The resin catalyst prepared by immobilizing the regioselective nitrilase AcN-S on the activated amino resin LX-1000EPHA achieved 99.12% immobilization yield, 73.40 U/g specific activity, and 95.42% activity recovery when loaded with 10 mg/g crude enzyme. The resin catalyst (100 g/L) could convert 1 M (148.2 g/L) substrate 1-cyanocyclohexaneacetonitrile to 1-cyanocyclohexaneacetic acid within 18 h, achieving a conversion of 95.40%. At a substrate concentration of 0.5 M, > 85% conversion could still be achieved after 15 batches. In a partial-mixed recirculating bed reactor, the resin catalyst (100 g/L) could completely convert 500 mM substrate within 10 h, and achieve > 90% conversion after 20 batches, with residual activity of 93.23%. Resin activation and cross-linking treatment after immobilization were found to improve operational stability, reduce protein leakage, and ensure high immobilization yield and activity recovery. The reactor provided a low-shear environment and recirculating flow, which together improve catalyst reusability and reduce product inhibition. The constructed reaction system provides a solution for the efficient conversion of slightly soluble/insoluble substrates and the integration of reaction and separation.

固定化酶生物反应器为生物催化提供了可控的反应环境和一体化的反应分离过程。本研究以树脂固定化硝化酶和部分混合循环床生物反应器为基础,研究了加巴喷丁中间体1-氰环己乙酸的生物催化合成工艺。将区域选择性腈酶AcN-S固定在活化的氨基树脂LX-1000EPHA上制备的树脂催化剂,负载10 mg/g粗酶时,固定化率为99.12%,比活性为73.40 U/g,活性回收率为95.42%。树脂催化剂(100 g/L)可在18 h内将1 M (148.2 g/L)底物1-氰环己烷乙腈转化为1-氰环己烷乙酸,转化率达95.40%。在底物浓度为0.5 M时,15批后仍可实现> 85%的转化率。在部分混合循环床反应器中,树脂催化剂(100 g/L)可在10 h内完全转化500 mM底物,20批次后转化率达到90%,剩余活性为93.23%。固定化后树脂活化和交联处理提高了操作稳定性,减少了蛋白质泄漏,确保了高固定化收率和活性恢复。反应器提供了低剪切环境和再循环流量,提高了催化剂的可重复使用性,减少了产物抑制。所构建的反应体系为微溶性/不溶性底物的高效转化和反应分离一体化提供了解决方案。
{"title":"Synthesis of 1-cyanocyclohexaneacetic acid in a partial-mixed recirculating bed reactor with resin-immobilized nitrilase.","authors":"Neng Xiong, Jia-Yu Chen, Pei-Qi Lei, Teng-Teng Fu, Rui Xu, Ya-Ping Xue, Yu-Guo Zheng","doi":"10.1007/s00449-025-03227-0","DOIUrl":"10.1007/s00449-025-03227-0","url":null,"abstract":"<p><p>Immobilized enzyme bioreactors provide a controlled reaction environment and integrated reaction-separation processes for biocatalysis. In this study, a biocatalytic process based on resin-immobilized nitrilase and a partial-mixed recirculating bed bioreactor was developed for the synthesis of 1-cyanocyclohexaneacetic acid, a gabapentin intermediate. The resin catalyst prepared by immobilizing the regioselective nitrilase AcN-S on the activated amino resin LX-1000EPHA achieved 99.12% immobilization yield, 73.40 U/g specific activity, and 95.42% activity recovery when loaded with 10 mg/g crude enzyme. The resin catalyst (100 g/L) could convert 1 M (148.2 g/L) substrate 1-cyanocyclohexaneacetonitrile to 1-cyanocyclohexaneacetic acid within 18 h, achieving a conversion of 95.40%. At a substrate concentration of 0.5 M, > 85% conversion could still be achieved after 15 batches. In a partial-mixed recirculating bed reactor, the resin catalyst (100 g/L) could completely convert 500 mM substrate within 10 h, and achieve > 90% conversion after 20 batches, with residual activity of 93.23%. Resin activation and cross-linking treatment after immobilization were found to improve operational stability, reduce protein leakage, and ensure high immobilization yield and activity recovery. The reactor provided a low-shear environment and recirculating flow, which together improve catalyst reusability and reduce product inhibition. The constructed reaction system provides a solution for the efficient conversion of slightly soluble/insoluble substrates and the integration of reaction and separation.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":"2059-2075"},"PeriodicalIF":3.6,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144941837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pharmacological properties of Bergenia ciliata synthesized green zinc sulfide nanoparticles (ZnS-NPs) and zinc oxide nanoparticles (ZnO-NPs). 毛缕草合成绿色硫化锌纳米粒子(ZnS-NPs)和氧化锌纳米粒子(ZnO-NPs)的药理学性质
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-08-25 DOI: 10.1007/s00449-025-03225-2
Hamza Tariq, Muhammad Usman Zahid, Bilal Qadeer, Ahmad M Alharbi, Abdulelah Aljuaid, Khalid Jambi, Nouman Rasheed Jatoi, Samah H Abu-Hussien, Muhammad Aslam Khan, Syed Ali Imran Bokhari

The conventional physical and chemical synthesis of nanomaterials is associated with multiple disadvantages, such as high energy consumption, high cost, time consumption, and the use of toxic chemicals that are not only hazardous in the manufacturing setup but are also harmful to the environment. To overcome such limitations, phytofabrication, i.e., the use of plants for the synthesis of nanoparticles is considered preferred as it is an inexpensive, sustainable, non-toxic, eco-friendly, and green approach. The current study aims to explore and compare the biological properties of green synthesized zinc oxide and zinc sulfide nanoparticles. The materials are prepared using eco-friendly chemistry, using an aqueous herbal extract of Bergenia ciliata. The materials are then subjected to comprehensive characterization techniques and biological studies using antibacterial, antifungal, antiparasitic, anticancer, antioxidant, and biocompatibility studies. Our comprehensive evaluation reveals that green-synthesized ZnS-NPs demonstrate superior antibacterial and anticancer properties compared to ZnO-NPs. Specifically, ZnS-NPs induced significant zones of inhibition (ZOI) of 24 ± 1.2 and 22 ± 0.8 mm against B. subtilis and E. coli, respectively, with a minimum inhibitory concentration (MIC) of 1.125 mg/mL. In contrast, ZnO-NPs displayed better dispersion behavior, along with enhanced antioxidant, antiparasitic, and antidiabetic activities. Notably, ZnO-NPs significantly inhibited both amastigote and promastigote forms of Leishmania tropica (KWH23), with MICs of 112 and 135 µg/mL, respectively, highlighting their strong therapeutic potential against leishmaniasis. However, none of the samples exhibit antifungal properties as they fail to inflict any zone of inhibition against the tested fungal strains. We thus conclude that the B. ciliata synthesized green ZnS-NPs and ZnO-NPs exhibit distinct but excellent therapeutic properties and that both the synthesized materials have the potential to be further explored in in vitro and in vivo studies.

传统的物理和化学合成纳米材料具有多种缺点,如高能耗、高成本、耗时,以及使用有毒化学物质,这些化学物质不仅在制造过程中有害,而且对环境有害。为了克服这些限制,植物制造,即利用植物合成纳米粒子被认为是首选,因为它是一种廉价、可持续、无毒、生态友好和绿色的方法。本研究旨在探索和比较绿色合成氧化锌纳米粒子和硫化锌纳米粒子的生物学特性。这些材料是用生态友好的化学方法制备的,使用的是毛缕草的水提取物。然后对这些材料进行全面的表征技术和生物学研究,包括抗菌、抗真菌、抗寄生虫、抗癌、抗氧化和生物相容性研究。我们的综合评价表明,与ZnO-NPs相比,绿色合成的ZnS-NPs具有更好的抗菌和抗癌性能。其中,ZnS-NPs对枯草芽孢杆菌和大肠杆菌的显著抑制区(ZOI)分别为24±1.2和22±0.8 mm,最小抑制浓度(MIC)为1.125 mg/mL。相比之下,ZnO-NPs表现出更好的分散行为,并具有增强的抗氧化、抗寄生虫和抗糖尿病活性。值得注意的是,ZnO-NPs显著抑制热带利什曼原虫(KWH23)的无马鞭毛体和原马鞭毛体形式,mic分别为112和135µg/mL,突出了它们对利什曼病的强大治疗潜力。然而,没有一个样品表现出抗真菌特性,因为它们不能对测试的真菌菌株施加任何区域的抑制。综上所述,毛纤毛虫合成的绿色ZnS-NPs和ZnO-NPs具有不同但优异的治疗性能,这两种合成材料在体外和体内研究中都有进一步探索的潜力。
{"title":"Pharmacological properties of Bergenia ciliata synthesized green zinc sulfide nanoparticles (ZnS-NPs) and zinc oxide nanoparticles (ZnO-NPs).","authors":"Hamza Tariq, Muhammad Usman Zahid, Bilal Qadeer, Ahmad M Alharbi, Abdulelah Aljuaid, Khalid Jambi, Nouman Rasheed Jatoi, Samah H Abu-Hussien, Muhammad Aslam Khan, Syed Ali Imran Bokhari","doi":"10.1007/s00449-025-03225-2","DOIUrl":"10.1007/s00449-025-03225-2","url":null,"abstract":"<p><p>The conventional physical and chemical synthesis of nanomaterials is associated with multiple disadvantages, such as high energy consumption, high cost, time consumption, and the use of toxic chemicals that are not only hazardous in the manufacturing setup but are also harmful to the environment. To overcome such limitations, phytofabrication, i.e., the use of plants for the synthesis of nanoparticles is considered preferred as it is an inexpensive, sustainable, non-toxic, eco-friendly, and green approach. The current study aims to explore and compare the biological properties of green synthesized zinc oxide and zinc sulfide nanoparticles. The materials are prepared using eco-friendly chemistry, using an aqueous herbal extract of Bergenia ciliata. The materials are then subjected to comprehensive characterization techniques and biological studies using antibacterial, antifungal, antiparasitic, anticancer, antioxidant, and biocompatibility studies. Our comprehensive evaluation reveals that green-synthesized ZnS-NPs demonstrate superior antibacterial and anticancer properties compared to ZnO-NPs. Specifically, ZnS-NPs induced significant zones of inhibition (ZOI) of 24 ± 1.2 and 22 ± 0.8 mm against B. subtilis and E. coli, respectively, with a minimum inhibitory concentration (MIC) of 1.125 mg/mL. In contrast, ZnO-NPs displayed better dispersion behavior, along with enhanced antioxidant, antiparasitic, and antidiabetic activities. Notably, ZnO-NPs significantly inhibited both amastigote and promastigote forms of Leishmania tropica (KWH23), with MICs of 112 and 135 µg/mL, respectively, highlighting their strong therapeutic potential against leishmaniasis. However, none of the samples exhibit antifungal properties as they fail to inflict any zone of inhibition against the tested fungal strains. We thus conclude that the B. ciliata synthesized green ZnS-NPs and ZnO-NPs exhibit distinct but excellent therapeutic properties and that both the synthesized materials have the potential to be further explored in in vitro and in vivo studies.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":"2017-2043"},"PeriodicalIF":3.6,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144941820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decoding the distribution, structure-function-redox potential relationship and recent advances in fungal laccases: a systematic approach. 系统解读真菌漆酶的分布、结构-功能-氧化还原电位关系及最新进展。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-27 DOI: 10.1007/s00449-025-03260-z
Rhydum Sharma, Richa Salwan, Nirlap Kour, Kartik Sharma, Vivek Sharma

Laccases, categorized as multicopper oxidases, are recognized for their multifaceted roles in ecosystems and their utility in diverse industrial applications. Laccases from higher fungi, specifically Ascomycota and Basidiomycota, have garnered significant research interest due to their elevated redox potentials and their capacity to degrade lignin in decaying wood, alongside other industrial uses. Here, we have conducted a comprehensive and systematic analysis on fungal laccases using Web of Science, Scopus, PubMed, and ScienceDirect. The genomic distribution, phylogenetic affiliation, and structural organization of laccase-encoding genes in higher fungal species were investigated, as were the catalytic mechanisms of the corresponding enzymes. Additionally, the study explores the correlation between structural domains and redox potential, as well as the impact of post-translational modifications like glycosylation on enzyme activity. Furthermore, the recent advancements in laccase engineering, employing strategies such as rational design, directed evolution, and heterologous expression are discussed. The review also explores the scope of "artificial intelligence and machine learning" in deducing the structure-function relationships, optimizing codon usage, predicting signal peptides, enhancing enzymatic performance, and developing host-specific genetic engineering techniques is also discussed for tailoring fungal laccases to meet the demands of industrial biocatalysis for improved activity and stability.

漆酶被归类为多铜氧化酶,因其在生态系统中的多方面作用和在各种工业应用中的效用而得到认可。高等真菌,特别是子囊菌门和担子菌门的漆酶,由于其高氧化还原电位和降解腐烂木材中的木质素的能力,以及其他工业用途,已经获得了重要的研究兴趣。在此,我们利用Web of Science、Scopus、PubMed和ScienceDirect对真菌漆酶进行了全面系统的分析。研究了高等真菌物种中漆酶编码基因的基因组分布、系统亲缘关系和结构组织,以及相应酶的催化机制。此外,本研究还探讨了结构域与氧化还原电位之间的相关性,以及糖基化等翻译后修饰对酶活性的影响。此外,本文还讨论了漆酶工程的最新进展,包括合理设计、定向进化和异源表达等策略。综述还探讨了“人工智能和机器学习”在推断结构-功能关系、优化密码子使用、预测信号肽、提高酶的性能以及开发宿主特异性基因工程技术方面的范围,并讨论了定制真菌漆酶以满足工业生物催化对提高活性和稳定性的要求。
{"title":"Decoding the distribution, structure-function-redox potential relationship and recent advances in fungal laccases: a systematic approach.","authors":"Rhydum Sharma, Richa Salwan, Nirlap Kour, Kartik Sharma, Vivek Sharma","doi":"10.1007/s00449-025-03260-z","DOIUrl":"https://doi.org/10.1007/s00449-025-03260-z","url":null,"abstract":"<p><p>Laccases, categorized as multicopper oxidases, are recognized for their multifaceted roles in ecosystems and their utility in diverse industrial applications. Laccases from higher fungi, specifically Ascomycota and Basidiomycota, have garnered significant research interest due to their elevated redox potentials and their capacity to degrade lignin in decaying wood, alongside other industrial uses. Here, we have conducted a comprehensive and systematic analysis on fungal laccases using Web of Science, Scopus, PubMed, and ScienceDirect. The genomic distribution, phylogenetic affiliation, and structural organization of laccase-encoding genes in higher fungal species were investigated, as were the catalytic mechanisms of the corresponding enzymes. Additionally, the study explores the correlation between structural domains and redox potential, as well as the impact of post-translational modifications like glycosylation on enzyme activity. Furthermore, the recent advancements in laccase engineering, employing strategies such as rational design, directed evolution, and heterologous expression are discussed. The review also explores the scope of \"artificial intelligence and machine learning\" in deducing the structure-function relationships, optimizing codon usage, predicting signal peptides, enhancing enzymatic performance, and developing host-specific genetic engineering techniques is also discussed for tailoring fungal laccases to meet the demands of industrial biocatalysis for improved activity and stability.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145629137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Utilizing sulfate-reducing bacteria in bioelectrochemical systems for industrial wastewater treatment: a comprehensive review. 硫酸盐还原菌在生物电化学系统中用于工业废水处理:综述。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-22 DOI: 10.1007/s00449-025-03256-9
Kajal Saini, Smita S Kumar, Vivek Kumar, Somvir Bajar

Industrial processes play a major role in environmental pollution, particularly through the discharge of sulfate-laden wastewater containing harmful metals and organic contaminants. The generation of sustainable energy and the management of industrial wastewater are pressing global challenges that require worldwide attention. Bioelectrochemical systems (BES) represent an emerging technology capable of simultaneously addressing both challenges by harnessing the metabolic processes of electroactive microorganisms to convert the chemical energy of organic substrates into electrical energy. Sulfate-reducing bacteria (SRB) are anaerobic microorganisms that converts sulfate to sulfide, facilitating the precipitation of heavy metals and other pollutants. SRB oxidize a broad spectrum of electron donors, and their ability to work in extreme environments and to decompose complex pollutants makes them promising options for treatment of sulfate- and metal-rich industrial effluents. The present study integrates metabolic and electrochemical insights to consolidate current knowledge on SRB-based bioelectroremediation systems, emphasizing their mechanisms, influencing factors, and electrode interactions, while also exploring design strategies and performance limitations. By outlining existing challenges and highlighting future opportunities, this study provides a framework for advancing SRB-BES applications in sustainable industrial wastewater treatment.

工业过程在环境污染中起主要作用,特别是通过排放含有有害金属和有机污染物的硫酸盐废水。可持续能源的产生和工业废水的管理是迫切的全球性挑战,需要全世界的关注。生物电化学系统(BES)代表了一种新兴技术,能够同时解决这两个挑战,通过利用电活性微生物的代谢过程将有机底物的化学能转化为电能。硫酸盐还原菌(SRB)是将硫酸盐转化为硫化物的厌氧微生物,有助于重金属和其他污染物的沉淀。SRB氧化广泛的电子供体,它们在极端环境下工作和分解复杂污染物的能力使它们成为处理富含硫酸盐和金属的工业废水的有希望的选择。本研究整合了代谢和电化学的见解,以巩固基于srb的生物电修复系统的现有知识,强调其机制,影响因素和电极相互作用,同时探索设计策略和性能限制。通过概述现有的挑战和强调未来的机遇,本研究为推进SRB-BES在可持续工业废水处理中的应用提供了一个框架。
{"title":"Utilizing sulfate-reducing bacteria in bioelectrochemical systems for industrial wastewater treatment: a comprehensive review.","authors":"Kajal Saini, Smita S Kumar, Vivek Kumar, Somvir Bajar","doi":"10.1007/s00449-025-03256-9","DOIUrl":"https://doi.org/10.1007/s00449-025-03256-9","url":null,"abstract":"<p><p>Industrial processes play a major role in environmental pollution, particularly through the discharge of sulfate-laden wastewater containing harmful metals and organic contaminants. The generation of sustainable energy and the management of industrial wastewater are pressing global challenges that require worldwide attention. Bioelectrochemical systems (BES) represent an emerging technology capable of simultaneously addressing both challenges by harnessing the metabolic processes of electroactive microorganisms to convert the chemical energy of organic substrates into electrical energy. Sulfate-reducing bacteria (SRB) are anaerobic microorganisms that converts sulfate to sulfide, facilitating the precipitation of heavy metals and other pollutants. SRB oxidize a broad spectrum of electron donors, and their ability to work in extreme environments and to decompose complex pollutants makes them promising options for treatment of sulfate- and metal-rich industrial effluents. The present study integrates metabolic and electrochemical insights to consolidate current knowledge on SRB-based bioelectroremediation systems, emphasizing their mechanisms, influencing factors, and electrode interactions, while also exploring design strategies and performance limitations. By outlining existing challenges and highlighting future opportunities, this study provides a framework for advancing SRB-BES applications in sustainable industrial wastewater treatment.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145572786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial potency and additive effect of herbal antimicrobial compounds against Pseudomonas aeruginosa, a causative agent of bacteremia. 草药抗菌化合物对铜绿假单胞菌(菌血症的病原体)的抗菌效力和加性效应。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-22 DOI: 10.1007/s00449-025-03238-x
Alireza Ebrahiminezhad, Nahid Moradi, Susan Sohrabi, Aydin Berenjian

Pseudomonas aeruginosa poses a significant threat in clinical settings, acting as a major causative agent of bacteremia, particularly in immunocompromised patients. Intrinsic resistance of this bacterium necessitates the urgent need for novel anti-Pseudomonas agents. Current therapeutic strategies are becoming increasingly inadequate, emphasizing the importance of screening studies aimed at discovering new antimicrobials that can effectively target this resilient bacterium. In this context, the exploration of herbal remedies presents a promising avenue for the development of effective antimicrobial agents. Many herbs possess bioactive compounds with documented antimicrobial properties, which could serve as potential lead substances in the quest for new treatments against P. aeruginosa. In the current study, the effect of the aqueous extract of 38 plant tissues, which have been introduced as an antimicrobial plant in the available publications, was investigated on P. aeruginosa. This study was done on a standard strain which is known as causative agent of bacteremia to find new avenues against P. aeruginosa bacteremia. Extracts from flower buds of S. aromaticum, flower of P. granatum L. var. pleniflora, and fruit of R. coriaria were found as effective against P. aeruginosa. Combination effect of these extracts was primarily evaluated by double well synergy test, and it was found that P. granatum and R. coriaria extracts may have additive or synergistic antimicrobial effect. More evaluations were performed via checkerboard assay. Fractional inhibitory concentration index (FICI) was calculated as 0.84 which fall within the additive range (0.5 < FICI ≤ 1). These results suggest that the combination of P. granatum and R. coriaria extracts can provide a promising natural mixture with enhanced antimicrobial efficacy to treat P. aeruginosa bacteremia. So, it can be concluded that mixed extract is a valuable source of natural anti-Pseudomonas compounds which can be subjected for further studies regarding toxicity and formulation.

铜绿假单胞菌在临床环境中构成重大威胁,作为菌血症的主要病原体,特别是在免疫功能低下的患者中。这种细菌的内在耐药性迫切需要新的抗假单胞菌药物。目前的治疗策略正变得越来越不充分,强调了筛选研究的重要性,旨在发现新的抗菌剂,可以有效地针对这种有弹性的细菌。在这种情况下,草药的探索为开发有效的抗菌药物提供了一条有希望的途径。许多草药具有具有抗菌特性的生物活性化合物,可以作为寻找铜绿假单胞菌新治疗方法的潜在先导物质。在目前的研究中,研究了38种植物组织的水提取物对铜绿假单胞菌的作用,这些植物组织在现有的出版物中被介绍为抗菌植物。本研究对一种被称为菌血症病原体的标准菌株进行了研究,以寻找抗铜绿假单胞菌菌血症的新途径。结果表明,香薷花蕾、石榴花和芫荽果实提取物对铜绿假单胞菌均有较好的抑菌效果。通过双孔协同试验初步评价了这两种提取物的联合抑菌效果,发现石榴和马鞭草提取物可能具有相加或协同抑菌作用。更多的评价通过棋盘法进行。分数抑制浓度指数(FICI)为0.84,在加性范围(0.5)内
{"title":"Antimicrobial potency and additive effect of herbal antimicrobial compounds against Pseudomonas aeruginosa, a causative agent of bacteremia.","authors":"Alireza Ebrahiminezhad, Nahid Moradi, Susan Sohrabi, Aydin Berenjian","doi":"10.1007/s00449-025-03238-x","DOIUrl":"https://doi.org/10.1007/s00449-025-03238-x","url":null,"abstract":"<p><p>Pseudomonas aeruginosa poses a significant threat in clinical settings, acting as a major causative agent of bacteremia, particularly in immunocompromised patients. Intrinsic resistance of this bacterium necessitates the urgent need for novel anti-Pseudomonas agents. Current therapeutic strategies are becoming increasingly inadequate, emphasizing the importance of screening studies aimed at discovering new antimicrobials that can effectively target this resilient bacterium. In this context, the exploration of herbal remedies presents a promising avenue for the development of effective antimicrobial agents. Many herbs possess bioactive compounds with documented antimicrobial properties, which could serve as potential lead substances in the quest for new treatments against P. aeruginosa. In the current study, the effect of the aqueous extract of 38 plant tissues, which have been introduced as an antimicrobial plant in the available publications, was investigated on P. aeruginosa. This study was done on a standard strain which is known as causative agent of bacteremia to find new avenues against P. aeruginosa bacteremia. Extracts from flower buds of S. aromaticum, flower of P. granatum L. var. pleniflora, and fruit of R. coriaria were found as effective against P. aeruginosa. Combination effect of these extracts was primarily evaluated by double well synergy test, and it was found that P. granatum and R. coriaria extracts may have additive or synergistic antimicrobial effect. More evaluations were performed via checkerboard assay. Fractional inhibitory concentration index (FICI) was calculated as 0.84 which fall within the additive range (0.5 < FICI ≤ 1). These results suggest that the combination of P. granatum and R. coriaria extracts can provide a promising natural mixture with enhanced antimicrobial efficacy to treat P. aeruginosa bacteremia. So, it can be concluded that mixed extract is a valuable source of natural anti-Pseudomonas compounds which can be subjected for further studies regarding toxicity and formulation.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145581855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biocarrier-driven enhancement of microbial reactor performance in wastewater treatment: a review. 生物载体驱动的微生物反应器在污水处理中的性能提升:综述。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-19 DOI: 10.1007/s00449-025-03258-7
Pingili Vydehi, G Shyamala, Gobinath Ravindran, R Gokulan

As pressure on the environment increases and urban populations continue to sprawl across, there is shortage of water resources, hence a strong need to improve wastewater treatment technologies emphasis to support sustainable water resource management. Aerobic granular microbial reactors is one of the advanced technologies that have shown great potential in enhancing wastewater treatment performance. The use of biocarriers in wastewater treatment systems depends on the capacity to attain microbial adhesion, formidable biofilm growth, and trigger deterioration of organic and developing contaminants. The porosity and hydrophobicity of biocarriers are important features of key materials that determine microbial colonization and activity. The new trends in biocarrier development have given rise to materials providing resilient microbial communities, the removal of recalcitrant contaminants, and the overall higher efficiency. The initiatives are more scalable, less expensive, and more environmentally friendly in comparison to conventional techniques of wastewater treatment. Moreover, the integration of the engineered biocarriers make the system more resistant to the changes in hydraulic and organic loading, which provides long-term sustainability and stability of the treatment activities. Further development of biocarrier technology is relevant to meet the continuously emerging challenges in wastewater treatment aligns with the scope of resource recovery and circular bioeconomy.

随着环境压力的增加和城市人口的不断蔓延,水资源短缺,因此迫切需要改进废水处理技术,重点支持可持续的水资源管理。好氧颗粒微生物反应器是目前在提高污水处理性能方面显示出巨大潜力的先进技术之一。废水处理系统中生物载体的使用取决于实现微生物粘附的能力,强大的生物膜生长,并引发有机和发展中的污染物的恶化。生物载体的孔隙度和疏水性是决定微生物定植和活性的关键材料的重要特征。生物载体发展的新趋势产生了提供弹性微生物群落的材料,去除顽固污染物,以及整体效率更高。与传统的废水处理技术相比,这些举措更具可扩展性,成本更低,更环保。此外,工程生物载体的整合使系统更能抵抗水力和有机负荷的变化,从而提供了处理活动的长期可持续性和稳定性。生物载体技术的进一步发展,与资源回收和循环生物经济的范围相一致,是应对废水处理中不断出现的挑战的必要条件。
{"title":"Biocarrier-driven enhancement of microbial reactor performance in wastewater treatment: a review.","authors":"Pingili Vydehi, G Shyamala, Gobinath Ravindran, R Gokulan","doi":"10.1007/s00449-025-03258-7","DOIUrl":"https://doi.org/10.1007/s00449-025-03258-7","url":null,"abstract":"<p><p>As pressure on the environment increases and urban populations continue to sprawl across, there is shortage of water resources, hence a strong need to improve wastewater treatment technologies emphasis to support sustainable water resource management. Aerobic granular microbial reactors is one of the advanced technologies that have shown great potential in enhancing wastewater treatment performance. The use of biocarriers in wastewater treatment systems depends on the capacity to attain microbial adhesion, formidable biofilm growth, and trigger deterioration of organic and developing contaminants. The porosity and hydrophobicity of biocarriers are important features of key materials that determine microbial colonization and activity. The new trends in biocarrier development have given rise to materials providing resilient microbial communities, the removal of recalcitrant contaminants, and the overall higher efficiency. The initiatives are more scalable, less expensive, and more environmentally friendly in comparison to conventional techniques of wastewater treatment. Moreover, the integration of the engineered biocarriers make the system more resistant to the changes in hydraulic and organic loading, which provides long-term sustainability and stability of the treatment activities. Further development of biocarrier technology is relevant to meet the continuously emerging challenges in wastewater treatment aligns with the scope of resource recovery and circular bioeconomy.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145547918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dual-functional potassium argininate for sustainable CO2 capture and microalgal resource recovery. 双功能精氨酸钾用于可持续CO2捕获和微藻资源回收。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-19 DOI: 10.1007/s00449-025-03257-8
Yizhen Wei, Yaoqi Hou, Dantong Wang, Zhan Hu, Chunfeng Song

The CO2 absorption-microalgae conversion (CAMC) system is a promising technology platform for simultaneous carbon capture and bioproduct generation. This work introduces potassium argininate (ArgK), an amino acid salt with dual functionality, as a novel component to enhance the performance of this CAMC system using Chlorella sp. L166. The ArgK-enhanced process significantly improved system performance, achieving a sevenfold increase in biomass carbon accumulation rate. The final biomass concentration also increased by 396.25% compared with the control. Furthermore, the technology effectively upgraded captured carbon into key biomolecules, boosting protein content by 331.73% to 512.79 mg/L and elevating carbohydrate content to 97.57 mg/L. This performance significantly surpassed that of conventional K2CO3-based systems, which resulted in limited protein accumulation. These findings demonstrate the dual role of ArgK as an efficient CO2 absorbent and biochemical modulator, offering a promising pathway to improve both biomass carbon accumulation efficiency and the economic value of algal biomass. This strategy supports the development of biocompatible, high-performance CAMC system for carbon mitigation and bioresource valorization.

二氧化碳吸收-微藻转化(CAMC)系统是一种很有前途的碳捕获和生物产品同步生产的技术平台。本文引入具有双重功能的氨基酸盐精氨酸钾(ArgK)作为一种新的组分,以提高小球藻L166的CAMC系统的性能。argk强化工艺显著提高了系统性能,使生物质碳积累速率提高了7倍。最终生物量浓度也比对照提高了396.25%。此外,该技术有效地将捕获的碳转化为关键生物分子,将蛋白质含量提高331.73%至512.79 mg/L,将碳水化合物含量提高至97.57 mg/L。这一性能明显优于传统的基于k2co3的系统,后者导致蛋白质积累有限。这些发现证明了ArgK作为一种高效的CO2吸收剂和生化调节剂的双重作用,为提高藻类生物量的碳积累效率和经济价值提供了一条有希望的途径。该战略支持开发具有生物相容性的高性能CAMC系统,以减少碳排放和实现生物资源增值。
{"title":"Dual-functional potassium argininate for sustainable CO<sub>2</sub> capture and microalgal resource recovery.","authors":"Yizhen Wei, Yaoqi Hou, Dantong Wang, Zhan Hu, Chunfeng Song","doi":"10.1007/s00449-025-03257-8","DOIUrl":"https://doi.org/10.1007/s00449-025-03257-8","url":null,"abstract":"<p><p>The CO<sub>2</sub> absorption-microalgae conversion (CAMC) system is a promising technology platform for simultaneous carbon capture and bioproduct generation. This work introduces potassium argininate (ArgK), an amino acid salt with dual functionality, as a novel component to enhance the performance of this CAMC system using Chlorella sp. L166. The ArgK-enhanced process significantly improved system performance, achieving a sevenfold increase in biomass carbon accumulation rate. The final biomass concentration also increased by 396.25% compared with the control. Furthermore, the technology effectively upgraded captured carbon into key biomolecules, boosting protein content by 331.73% to 512.79 mg/L and elevating carbohydrate content to 97.57 mg/L. This performance significantly surpassed that of conventional K<sub>2</sub>CO<sub>3</sub>-based systems, which resulted in limited protein accumulation. These findings demonstrate the dual role of ArgK as an efficient CO<sub>2</sub> absorbent and biochemical modulator, offering a promising pathway to improve both biomass carbon accumulation efficiency and the economic value of algal biomass. This strategy supports the development of biocompatible, high-performance CAMC system for carbon mitigation and bioresource valorization.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145547924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recent advances in amine-based pretreatment for the degradation of lignocellulosic biomass and its application in microbial fermentation for chemical production. 胺基预处理降解木质纤维素生物质及其在化学生产微生物发酵中的应用研究进展。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-12 DOI: 10.1007/s00449-025-03259-6
Jiabin Wang, Cheng Zhang, Yu Shao, Fang Xie, Rongling Yang, Hongzhen Luo

Lignocellulosic biomass, a renewable raw material for producing biobased products, has attracted significant attention in biorefinery. To efficient deconstruct the complex components in lignocellulose, development of pretreatment technologies is a key research focus. Practically, use of cost-effective and easily recyclable solvent to achieve high fractionation and enzymatic hydrolysis efficiency could prompt the valorization of lignocellulose. With the excellent nucleophilicity and reactivity, amine compounds have shown remarkable advantages in lignocellulose pretreatment. Hence, this review summarizes recent amine-based pretreatment strategies to explore their key roles in lignocellulose structural deconstruction, enhancement of sugar yields, and fermentability of substrates for biobased chemical production. Firstly, the effects of amine compounds on lignin removal, cellulose crystalline structure transformation, and improvement in enzymatic hydrolysis are reviewed. Subsequently, progress in synergistic pretreatment combining amine solvents with green systems such as ionic liquids, surfactants, and mechanical assistance is summarized, demonstrating the potential of integrated approach to enhance biomass fractionation, preserve lignin structure, and increase fermentable sugar yields. Meanwhile, this review also discusses the application of solid and liquid fractions obtained from amine-based pretreatment in microbial fermentation to produce bioethanol, L-lactic acid, and biobutanol. Finally, challenges remain in by-product control and solvent recovery in amine-based pretreatment, and prospects for its development in future biorefinery are systematically provided. Overall, amine-based pretreatment offers a sustainable pathway for efficient deconstruction and valorization of lignocellulose.

木质纤维素生物质作为一种可再生的生产生物基产品的原料,在生物炼制领域引起了广泛的关注。为了有效地分解木质纤维素中的复杂组分,预处理技术的开发是一个重要的研究热点。在实际应用中,使用成本低且易于回收的溶剂来实现高的分馏和酶解效率,可以促进木质纤维素的增值。胺类化合物具有优良的亲核性和反应活性,在木质纤维素预处理中表现出显著的优势。因此,本文综述了近年来胺基预处理策略,探讨其在木质纤维素结构解构、提高糖产量和生物基化工生产底物发酵性方面的关键作用。首先,综述了胺类化合物对木质素去除、纤维素晶体结构转变和酶解性能的影响。随后,总结了胺溶剂与离子液体、表面活性剂和机械辅助等绿色体系协同预处理的进展,证明了综合方法在提高生物质分馏、保持木质素结构和提高可发酵糖产量方面的潜力。同时,本文还对氨基预处理所得固体和液体组分在微生物发酵生产生物乙醇、l -乳酸和生物丁醇方面的应用进行了综述。最后,对胺基预处理在副产物控制和溶剂回收方面存在的挑战进行了展望,并对其在未来生物炼制中的发展前景进行了系统的展望。总的来说,基于胺的预处理为木质纤维素的有效解构和增值提供了一个可持续的途径。
{"title":"Recent advances in amine-based pretreatment for the degradation of lignocellulosic biomass and its application in microbial fermentation for chemical production.","authors":"Jiabin Wang, Cheng Zhang, Yu Shao, Fang Xie, Rongling Yang, Hongzhen Luo","doi":"10.1007/s00449-025-03259-6","DOIUrl":"https://doi.org/10.1007/s00449-025-03259-6","url":null,"abstract":"<p><p>Lignocellulosic biomass, a renewable raw material for producing biobased products, has attracted significant attention in biorefinery. To efficient deconstruct the complex components in lignocellulose, development of pretreatment technologies is a key research focus. Practically, use of cost-effective and easily recyclable solvent to achieve high fractionation and enzymatic hydrolysis efficiency could prompt the valorization of lignocellulose. With the excellent nucleophilicity and reactivity, amine compounds have shown remarkable advantages in lignocellulose pretreatment. Hence, this review summarizes recent amine-based pretreatment strategies to explore their key roles in lignocellulose structural deconstruction, enhancement of sugar yields, and fermentability of substrates for biobased chemical production. Firstly, the effects of amine compounds on lignin removal, cellulose crystalline structure transformation, and improvement in enzymatic hydrolysis are reviewed. Subsequently, progress in synergistic pretreatment combining amine solvents with green systems such as ionic liquids, surfactants, and mechanical assistance is summarized, demonstrating the potential of integrated approach to enhance biomass fractionation, preserve lignin structure, and increase fermentable sugar yields. Meanwhile, this review also discusses the application of solid and liquid fractions obtained from amine-based pretreatment in microbial fermentation to produce bioethanol, L-lactic acid, and biobutanol. Finally, challenges remain in by-product control and solvent recovery in amine-based pretreatment, and prospects for its development in future biorefinery are systematically provided. Overall, amine-based pretreatment offers a sustainable pathway for efficient deconstruction and valorization of lignocellulose.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145494431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhanced methyl tertiary butyl ether degradation and electricity generation in microbial fuel cells using a modified anode and additives. 使用改性阳极和添加剂增强甲基叔丁基醚在微生物燃料电池中的降解和发电。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-12 DOI: 10.1007/s00449-025-03248-9
Marziyeh Ansari Shiri, Maryam Faraji, Majid Hashemi, Davood Kalantar-Neyestanaki, Hoda Amiri, Majid Nozari

This study aimed to improve methyl tertiary butyl ether (MTBE) degradation and power production in microbial fuel cells (MFCs) by employing an iron nanoparticle-coated graphite carbon electrode (Fe-GCE), co-metabolites (sodium acetate (SAC) and glucose (GLS)), and surfactants (sodium dodecyl sulfate (SDS) and cetyltrimethylammonium bromide (CTAB)). Fe-GCE enhanced the roughness and hydrophilicity of the electrodes, thereby promoting their electrochemical activity. This study compared the use of polyvinyl alcohol/glutaraldehyde (PVA/GA) and Nafion 117 membranes and the impact of carbon sources and surfactants on the performance of MFCs. The optimal conditions achieved 97.9% MTBE removal (10 mg/L) within 96 h by employing SAC and SDS in Nafion 117-MFC with a voltage of 335 mV in synthetic wastewater. Fe-GCE exhibited minimal antibacterial action and iron leaching (< 0.3 mg/L in 30 days), suggesting its stability during wastewater treatment. Bacterial community profiling revealed that Bacillus, Alcaligenes, Trichococcus, and Magnetospirillum were the main MTBE degraders. Statistical analysis validated substantial improvement in MTBE removal and voltage yield with the use of additives, and that PVA/GA-MFC had performance similar to Nafion 117-MFC, providing a cost-effective alternative with potential commercial success. This study provides insights into the potential use of MFCs for treating recalcitrant pollutants while producing green energy, paving the way for eco-friendly waste management strategies.

本研究旨在通过铁纳米颗粒包覆石墨碳电极(Fe-GCE)、共代谢物(乙酸钠(SAC)和葡萄糖(GLS))和表面活性剂(十二烷基硫酸钠(SDS)和十六烷基三甲基溴化铵(CTAB))改善微生物燃料电池(mfc)中甲基叔丁基醚(MTBE)的降解和发电。Fe-GCE增强了电极的粗糙度和亲水性,从而提高了电极的电化学活性。本研究比较了聚乙烯醇/戊二醛(PVA/GA)和Nafion 117膜的使用,以及碳源和表面活性剂对mfc性能的影响。在335 mV电压条件下,SAC和SDS在Nafion 117-MFC上处理合成废水,96 h内MTBE去除率达到97.9% (10 mg/L)。Fe-GCE表现出最小的抗菌作用和铁浸出(
{"title":"Enhanced methyl tertiary butyl ether degradation and electricity generation in microbial fuel cells using a modified anode and additives.","authors":"Marziyeh Ansari Shiri, Maryam Faraji, Majid Hashemi, Davood Kalantar-Neyestanaki, Hoda Amiri, Majid Nozari","doi":"10.1007/s00449-025-03248-9","DOIUrl":"https://doi.org/10.1007/s00449-025-03248-9","url":null,"abstract":"<p><p>This study aimed to improve methyl tertiary butyl ether (MTBE) degradation and power production in microbial fuel cells (MFCs) by employing an iron nanoparticle-coated graphite carbon electrode (Fe-GCE), co-metabolites (sodium acetate (SAC) and glucose (GLS)), and surfactants (sodium dodecyl sulfate (SDS) and cetyltrimethylammonium bromide (CTAB)). Fe-GCE enhanced the roughness and hydrophilicity of the electrodes, thereby promoting their electrochemical activity. This study compared the use of polyvinyl alcohol/glutaraldehyde (PVA/GA) and Nafion 117 membranes and the impact of carbon sources and surfactants on the performance of MFCs. The optimal conditions achieved 97.9% MTBE removal (10 mg/L) within 96 h by employing SAC and SDS in Nafion 117-MFC with a voltage of 335 mV in synthetic wastewater. Fe-GCE exhibited minimal antibacterial action and iron leaching (< 0.3 mg/L in 30 days), suggesting its stability during wastewater treatment. Bacterial community profiling revealed that Bacillus, Alcaligenes, Trichococcus, and Magnetospirillum were the main MTBE degraders. Statistical analysis validated substantial improvement in MTBE removal and voltage yield with the use of additives, and that PVA/GA-MFC had performance similar to Nafion 117-MFC, providing a cost-effective alternative with potential commercial success. This study provides insights into the potential use of MFCs for treating recalcitrant pollutants while producing green energy, paving the way for eco-friendly waste management strategies.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145494468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A generalized hybrid machine learning framework for predicting biohydrogen production via dark fermentation of organic wastes. 预测有机废物暗发酵产氢的广义混合机器学习框架。
IF 3.6 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-11-08 DOI: 10.1007/s00449-025-03255-w
Nour Elislam Mougari, Djamal Eddine Ghersi, Farida Iachachene, Jean François Largeau, Müslüm Arici

The rising global demand for sustainable energy has directed significant attention towards biohydrogen production via dark fermentation of organic wastes. Accurate yield prediction is crucial for optimizing process conditions and enhancing overall process. This study aims to develop a robust and interpretable predictive framework that integrates kinetic modeling with a hybrid Bayesian Optimization-Artificial Neural Network (BO-ANN) approach for precise biohydrogen yield prediction. The core novelty lies in representing each substrate not as a simple category, but by its quantitative kinetic parameters from the Modified Gompertz equation, providing a biologically meaningful input. A comprehensive database compiled from the literature incorporates key process variables, including temperature, pH, residence time, and substrate concentration, along with kinetic parameters from the Modified Gompertz equation characterizing each substrate. The BO algorithm was employed to optimize the ANN architecture, and 5-fold cross-validation was used to evaluate model generalization ability. The proposed hybrid model achieved outstanding predictive performance (R² = 0.9980, RMSE = 0.0117, MAE = 0.0062), confirming its accuracy and robustness. Furthermore, SHAP analysis and correlation metrics provided interpretable insights into feature contributions, particularly the relevance of kinetic descriptors. Overall, the proposed BO-ANN framework offers a scalable, interpretable, and biologically grounded tool to improve predictive accuracy and support the design of more efficient and sustainable biohydrogen production systems.

全球对可持续能源不断增长的需求已经引起了人们对通过有机废物暗发酵生产生物氢的极大关注。准确的良率预测是优化工艺条件和提高整体工艺水平的关键。本研究旨在开发一种鲁棒且可解释的预测框架,该框架将动力学建模与混合贝叶斯优化-人工神经网络(BO-ANN)方法相结合,用于精确的生物氢产量预测。其核心新颖之处在于,它不是将每种基质作为一个简单的类别来表示,而是通过修正Gompertz方程中的定量动力学参数来表示,从而提供了具有生物学意义的输入。从文献中编译的综合数据库包含关键过程变量,包括温度,pH值,停留时间和底物浓度,以及表征每种底物的修正Gompertz方程的动力学参数。采用BO算法优化神经网络结构,采用5次交叉验证评价模型泛化能力。所提出的混合模型取得了较好的预测效果(R²= 0.9980,RMSE = 0.0117, MAE = 0.0062),验证了模型的准确性和鲁棒性。此外,SHAP分析和相关指标为特征贡献提供了可解释的见解,特别是动力学描述符的相关性。总体而言,提出的BO-ANN框架提供了一个可扩展、可解释和基于生物的工具,以提高预测准确性,并支持设计更高效和可持续的生物制氢系统。
{"title":"A generalized hybrid machine learning framework for predicting biohydrogen production via dark fermentation of organic wastes.","authors":"Nour Elislam Mougari, Djamal Eddine Ghersi, Farida Iachachene, Jean François Largeau, Müslüm Arici","doi":"10.1007/s00449-025-03255-w","DOIUrl":"https://doi.org/10.1007/s00449-025-03255-w","url":null,"abstract":"<p><p>The rising global demand for sustainable energy has directed significant attention towards biohydrogen production via dark fermentation of organic wastes. Accurate yield prediction is crucial for optimizing process conditions and enhancing overall process. This study aims to develop a robust and interpretable predictive framework that integrates kinetic modeling with a hybrid Bayesian Optimization-Artificial Neural Network (BO-ANN) approach for precise biohydrogen yield prediction. The core novelty lies in representing each substrate not as a simple category, but by its quantitative kinetic parameters from the Modified Gompertz equation, providing a biologically meaningful input. A comprehensive database compiled from the literature incorporates key process variables, including temperature, pH, residence time, and substrate concentration, along with kinetic parameters from the Modified Gompertz equation characterizing each substrate. The BO algorithm was employed to optimize the ANN architecture, and 5-fold cross-validation was used to evaluate model generalization ability. The proposed hybrid model achieved outstanding predictive performance (R² = 0.9980, RMSE = 0.0117, MAE = 0.0062), confirming its accuracy and robustness. Furthermore, SHAP analysis and correlation metrics provided interpretable insights into feature contributions, particularly the relevance of kinetic descriptors. Overall, the proposed BO-ANN framework offers a scalable, interpretable, and biologically grounded tool to improve predictive accuracy and support the design of more efficient and sustainable biohydrogen production systems.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145470444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Bioprocess and Biosystems Engineering
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1