Pub Date : 2026-02-14DOI: 10.1007/s00449-026-03291-0
Maryam Arshad, Areeba Nadeem, Haris Maqbool, Basit Khan, Faria Khan, Rifat Naseem, Esha Rani, Iffat Naz, Amna, Shafiq Ur Rehman, Javed Ali, Farooq Hussain Munis, Hassan Javed Chaudhary
The rapid expansion of nanotechnology has opened novel opportunities to share for addressing global challenges related to food security, environmental sustainability, and human health. Conventional physical and chemical methods for the synthesis of nanoparticles (NPs) often involve hazardous chemicals, high energy demands, and poor biocompatibility. In contrast, bacterial-synthesized NPs are considered eco-friendly and multifunctional with their enormous potential in agriculture, bioremediation, and biomedical applications. The study highlights the importance of Bacteriogenic NPs as a sustainable alternative to chemically and physically produced NPs due to their reduced toxicity and lower energy consumption. Hence, bacteriogenic NPs, particularly those derived from Bacillus and Pseudomonas species, exhibit remarkable stability, biocompatibility, and multifunctional spectrum due to inherent reducing and capping biomolecules secreted by those bacteria. This review highlights the biosynthetic mechanisms, characterization techniques, and diverse applications of bacterial-based NPs. Initially, in agriculture, silver NPs synthesized by Bacillus xiamenesis enhanced rice growth while suppressing Xanthomonas oryzae, the causal agent of bacterial blight. Then, in environmental remediation, Bacillus pumilus-derived silver nanoparticles demonstrated 96.99% degradation of Congo red dye, underscoring their catalytic efficiency. And, in biomedical sciences, selenium NPs biosynthesized from Streptomyces minutiscleroticus exhibited antiviral activity against dengue virus type 1, highlighting their therapeutic promise. Key findings reveal that these NPs can enhance stress tolerance, nutrient uptake, and disease resistance, along with remediating harmful pollutants from the environment. They also exhibit strong antimicrobial and anticancer properties. Despite all these advancements, much work is still needed to optimize NPs' yield, uniformity, and functionality, as well as environmental and health safety assessment. Integrating omics approaches and nanobiotechnology innovations may unlock new opportunities for precision agriculture, environmental restoration, and advanced therapeutics. In a nutshell, bacterially mediated nanotechnology emerges as a sustainable and transformative tool to address pressing societal and ecological concerns.
{"title":"Harnessing plant growth-promoting bacteria for nanoparticle biosynthesis: a systematic review of mechanisms, agricultural applications, and biomedical potential.","authors":"Maryam Arshad, Areeba Nadeem, Haris Maqbool, Basit Khan, Faria Khan, Rifat Naseem, Esha Rani, Iffat Naz, Amna, Shafiq Ur Rehman, Javed Ali, Farooq Hussain Munis, Hassan Javed Chaudhary","doi":"10.1007/s00449-026-03291-0","DOIUrl":"https://doi.org/10.1007/s00449-026-03291-0","url":null,"abstract":"<p><p>The rapid expansion of nanotechnology has opened novel opportunities to share for addressing global challenges related to food security, environmental sustainability, and human health. Conventional physical and chemical methods for the synthesis of nanoparticles (NPs) often involve hazardous chemicals, high energy demands, and poor biocompatibility. In contrast, bacterial-synthesized NPs are considered eco-friendly and multifunctional with their enormous potential in agriculture, bioremediation, and biomedical applications. The study highlights the importance of Bacteriogenic NPs as a sustainable alternative to chemically and physically produced NPs due to their reduced toxicity and lower energy consumption. Hence, bacteriogenic NPs, particularly those derived from Bacillus and Pseudomonas species, exhibit remarkable stability, biocompatibility, and multifunctional spectrum due to inherent reducing and capping biomolecules secreted by those bacteria. This review highlights the biosynthetic mechanisms, characterization techniques, and diverse applications of bacterial-based NPs. Initially, in agriculture, silver NPs synthesized by Bacillus xiamenesis enhanced rice growth while suppressing Xanthomonas oryzae, the causal agent of bacterial blight. Then, in environmental remediation, Bacillus pumilus-derived silver nanoparticles demonstrated 96.99% degradation of Congo red dye, underscoring their catalytic efficiency. And, in biomedical sciences, selenium NPs biosynthesized from Streptomyces minutiscleroticus exhibited antiviral activity against dengue virus type 1, highlighting their therapeutic promise. Key findings reveal that these NPs can enhance stress tolerance, nutrient uptake, and disease resistance, along with remediating harmful pollutants from the environment. They also exhibit strong antimicrobial and anticancer properties. Despite all these advancements, much work is still needed to optimize NPs' yield, uniformity, and functionality, as well as environmental and health safety assessment. Integrating omics approaches and nanobiotechnology innovations may unlock new opportunities for precision agriculture, environmental restoration, and advanced therapeutics. In a nutshell, bacterially mediated nanotechnology emerges as a sustainable and transformative tool to address pressing societal and ecological concerns.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146194220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-11DOI: 10.1007/s00449-026-03290-1
Guang-Zhu Zhang, Qing-Liang Xu, Hong-Feng Li, Zhuo Li
Problematic clays are widely stabilized with lime to improve strength and durability, yet slow early-age strength development, pronounced brittle failure, and limited densification often constrain performance in high-alkalinity environments. This study explores a synergistic route that integrates diatomite-immobilized ureolytic microbially induced calcium carbonate precipitation with lime stabilization. Mixtures were prepared with 6% hydrated lime and 3 to 7% diatomite or a diatomite-based microbial curing agent; where applicable a 1.0 M urea-calcium chloride solution supplied substrates for mineralization. Mechanical properties were assessed by unconfined compressive strength, unconsolidated-undrained triaxial testing, and ultrasonic pulse velocity, and microstructure and phase assemblage were characterized using scanning electron microscopy, X-ray diffraction, and thermogravimetric analysis. Results show clear dosage-dependent gains. At 28 d, unconfined compressive strength reached 1987.18, 2278.17, and 2563.00 kPa for 3%DE-B, 5%DE-B, and 7%DE-B, exceeding the corresponding diatomite-only groups by 75.65%, 83.17%, and 88.50%. Under 300 kPa confining pressure, cohesion increased to 382.52 to 498.72 kPa and the internal friction angle to 38.88 to 47.88°. Ultrasonic pulse velocity rose with curing age, with 7%DE-B increasing by 45.01% from 7 d to 28 d. Triaxial responses followed linear elasticity, strain hardening, peak strength, and softening, while failure shifted from through-crack brittleness to non-through diffuse cracking with pronounced bulging. Microstructural evidence indicates clustered calcium silicate hydrate (C-S-H) progressively encapsulating diatomite and abundant ellipsoidal CaCO₃ forming interconnected three-dimensional networks. These observations support a synergy between pozzolanic reaction and microbial mineralization that constructs a multi-scale cementation network, densifies the matrix, and strengthens interparticle contacts, yielding reproducible improvements in strength, ductility, and structural integrity. These results provide reference value for performance enhancement and process optimization of lime-stabilized clays and cementation-enhanced clay systems.
{"title":"Process-engineered immobilization of ureolytic biocatalysts in diatomite for in-situ biomineralization under high-alkalinity solid-phase conditions.","authors":"Guang-Zhu Zhang, Qing-Liang Xu, Hong-Feng Li, Zhuo Li","doi":"10.1007/s00449-026-03290-1","DOIUrl":"https://doi.org/10.1007/s00449-026-03290-1","url":null,"abstract":"<p><p>Problematic clays are widely stabilized with lime to improve strength and durability, yet slow early-age strength development, pronounced brittle failure, and limited densification often constrain performance in high-alkalinity environments. This study explores a synergistic route that integrates diatomite-immobilized ureolytic microbially induced calcium carbonate precipitation with lime stabilization. Mixtures were prepared with 6% hydrated lime and 3 to 7% diatomite or a diatomite-based microbial curing agent; where applicable a 1.0 M urea-calcium chloride solution supplied substrates for mineralization. Mechanical properties were assessed by unconfined compressive strength, unconsolidated-undrained triaxial testing, and ultrasonic pulse velocity, and microstructure and phase assemblage were characterized using scanning electron microscopy, X-ray diffraction, and thermogravimetric analysis. Results show clear dosage-dependent gains. At 28 d, unconfined compressive strength reached 1987.18, 2278.17, and 2563.00 kPa for 3%DE-B, 5%DE-B, and 7%DE-B, exceeding the corresponding diatomite-only groups by 75.65%, 83.17%, and 88.50%. Under 300 kPa confining pressure, cohesion increased to 382.52 to 498.72 kPa and the internal friction angle to 38.88 to 47.88°. Ultrasonic pulse velocity rose with curing age, with 7%DE-B increasing by 45.01% from 7 d to 28 d. Triaxial responses followed linear elasticity, strain hardening, peak strength, and softening, while failure shifted from through-crack brittleness to non-through diffuse cracking with pronounced bulging. Microstructural evidence indicates clustered calcium silicate hydrate (C-S-H) progressively encapsulating diatomite and abundant ellipsoidal CaCO₃ forming interconnected three-dimensional networks. These observations support a synergy between pozzolanic reaction and microbial mineralization that constructs a multi-scale cementation network, densifies the matrix, and strengthens interparticle contacts, yielding reproducible improvements in strength, ductility, and structural integrity. These results provide reference value for performance enhancement and process optimization of lime-stabilized clays and cementation-enhanced clay systems.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146155950","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-11DOI: 10.1007/s00449-026-03285-y
Karla M Hernández-García, Eligio P Rivero, Juana Rueda-Ramírez, Gabriel Trejo, Fernando F Rivera, Francisco J Cervantes, Bibiana Cercado
Microbial bioelectrochemical technologies rely on the development of biofilms on electrode surfaces; therefore, a high surface area in packed anodes is advantageous for their performance. In addition, bioelectrochemical reactors (BERs) for hydrogen production require low-cost installation materials to enable large-scale implementation. In this study, a one-liter BER was constructed using 0.38 L of carbon felt as a packed bioanode, 0.65 L of compost leachate as the electrolyte, and a stainless-steel mesh cathode. The reactor was operated under an anode potential of 0.05 V vs. Ag/AgCl (KCl, 3.5 M) in batch cycles of 24 h each. After medium replacement, the maximum accumulated gas volume reached 2.37 L, corresponding to a production rate of 7.38 m⁻3 gas m⁻3 packed reactor d⁻1. The cathode potential varied over time, leading to fluctuations in energy efficiency, which exceeded 100%. Average energy, cathode and coulombic efficiencies over eight operational cycles were 124 ± 64%, 118 ± 56%, and 120 ± 61%, respectively. The gas yield obtained from compost leachate in the BER was within the upper range of productivity reported for microbial electrolysis cells. This work demonstrates a sustainable alternative for BER installation and operation and proposes a monitoring strategy to track energy efficiency during hydrogen production.
微生物电化学技术依赖于电极表面生物膜的发展;因此,填料阳极的高表面积有利于其性能。此外,用于制氢的生物电化学反应器(ber)需要低成本的安装材料才能大规模实施。在这项研究中,用0.38升的碳毡作为填充生物阳极,0.65升的堆肥渗滤液作为电解质,以及一个不锈钢网状阴极构建了一个1升的BER。反应器在0.05 V vs. Ag/AgCl (KCl, 3.5 M)阳极电位下运行,每批循环24 h。更换介质后,最大累积气量达到2.37 L,对应的生产速度为7.38 m - 3气体m - 3包装反应器d - 1。阴极电位随时间变化,导致能量效率波动,超过100%。8个运行周期的平均能量效率、阴极效率和库仑效率分别为124±64%、118±56%和120±61%。在BER中从堆肥渗滤液中获得的气体产量在微生物电解细胞生产率的上限范围内。这项工作展示了BER安装和操作的可持续替代方案,并提出了一种监测策略,以跟踪氢气生产过程中的能源效率。
{"title":"From compost to clean energy: influence of cathode potential evolution on hydrogen production in bioelectrochemical reactors.","authors":"Karla M Hernández-García, Eligio P Rivero, Juana Rueda-Ramírez, Gabriel Trejo, Fernando F Rivera, Francisco J Cervantes, Bibiana Cercado","doi":"10.1007/s00449-026-03285-y","DOIUrl":"https://doi.org/10.1007/s00449-026-03285-y","url":null,"abstract":"<p><p>Microbial bioelectrochemical technologies rely on the development of biofilms on electrode surfaces; therefore, a high surface area in packed anodes is advantageous for their performance. In addition, bioelectrochemical reactors (BERs) for hydrogen production require low-cost installation materials to enable large-scale implementation. In this study, a one-liter BER was constructed using 0.38 L of carbon felt as a packed bioanode, 0.65 L of compost leachate as the electrolyte, and a stainless-steel mesh cathode. The reactor was operated under an anode potential of 0.05 V vs. Ag/AgCl (KCl, 3.5 M) in batch cycles of 24 h each. After medium replacement, the maximum accumulated gas volume reached 2.37 L, corresponding to a production rate of 7.38 m⁻<sup>3</sup> gas m⁻<sup>3</sup> packed reactor d⁻<sup>1</sup>. The cathode potential varied over time, leading to fluctuations in energy efficiency, which exceeded 100%. Average energy, cathode and coulombic efficiencies over eight operational cycles were 124 ± 64%, 118 ± 56%, and 120 ± 61%, respectively. The gas yield obtained from compost leachate in the BER was within the upper range of productivity reported for microbial electrolysis cells. This work demonstrates a sustainable alternative for BER installation and operation and proposes a monitoring strategy to track energy efficiency during hydrogen production.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146155906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-11DOI: 10.1007/s00449-026-03287-w
Siva Prasath Chellapan Sundaram, Ajay Gunasekaran, C Honey Chandran, N Swathy Gopal, T V Suchithra
{"title":"Systematic process optimization for enhanced biosynthesis of 2-phenylethanol using Candida sorboxylosa.","authors":"Siva Prasath Chellapan Sundaram, Ajay Gunasekaran, C Honey Chandran, N Swathy Gopal, T V Suchithra","doi":"10.1007/s00449-026-03287-w","DOIUrl":"https://doi.org/10.1007/s00449-026-03287-w","url":null,"abstract":"","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146155963","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Exopolysaccharides (EPS) are natural macromolecular carbohydrates with good functional activity and physiological activities, but their industrial application was limited by high production costs and unclear structure-function relationships. This study developed a circular economy strategy to produce EPS via microbial fermentation using two food processing wastes (cane molasses and soy sauce residue). After optimizing fermentation medium, the waste-based system achieved an EPS yield of 33.06 ± 0.54 g/L. Two heteropolysaccharides-EPS-2 and EPS-3 were successfully isolated and purified. Monosaccharide composition analysis revealed that EPS-2 primarily consisted of arabinose, glucose, and galactose in a ratio of 65.35:20.82:13.83. In contrast, EPS-3 exhibited a more complex profile containing rhamnose (33.54%), galactose (31.62%), fucose (17.93%), arabinose (13.47%), and glucose (3.44%). Notably, EPS-3 demonstrated higher antioxidant activity than EPS-2. This study successfully demonstrates an innovative waste-to-value conversion strategy that not only achieves high-value utilization of discarded resources but also establishes the fundamental theoretical framework for scalable production of renewable biopolymers.
{"title":"Sustainable biosynthesis of exopolysaccharides derived from agricultural byproducts with effective antioxidant properties.","authors":"Wenfeng Mo, Cuiwen Jian, Ailing Deng, Jiamin Xu, Lijia Liu, YunXia Bai, Shubo Li","doi":"10.1007/s00449-025-03273-8","DOIUrl":"https://doi.org/10.1007/s00449-025-03273-8","url":null,"abstract":"<p><p>Exopolysaccharides (EPS) are natural macromolecular carbohydrates with good functional activity and physiological activities, but their industrial application was limited by high production costs and unclear structure-function relationships. This study developed a circular economy strategy to produce EPS via microbial fermentation using two food processing wastes (cane molasses and soy sauce residue). After optimizing fermentation medium, the waste-based system achieved an EPS yield of 33.06 ± 0.54 g/L. Two heteropolysaccharides-EPS-2 and EPS-3 were successfully isolated and purified. Monosaccharide composition analysis revealed that EPS-2 primarily consisted of arabinose, glucose, and galactose in a ratio of 65.35:20.82:13.83. In contrast, EPS-3 exhibited a more complex profile containing rhamnose (33.54%), galactose (31.62%), fucose (17.93%), arabinose (13.47%), and glucose (3.44%). Notably, EPS-3 demonstrated higher antioxidant activity than EPS-2. This study successfully demonstrates an innovative waste-to-value conversion strategy that not only achieves high-value utilization of discarded resources but also establishes the fundamental theoretical framework for scalable production of renewable biopolymers.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117751","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-04DOI: 10.1007/s00449-026-03284-z
Kai Zhang, Hongyu Guo, Norbert Klitzsch, Zhazha Hu, Bin Zhang, Hao Chen
{"title":"Enhanced bio-methanation of coal through direct interspecies electron transfer mediated by nano-magnetite.","authors":"Kai Zhang, Hongyu Guo, Norbert Klitzsch, Zhazha Hu, Bin Zhang, Hao Chen","doi":"10.1007/s00449-026-03284-z","DOIUrl":"https://doi.org/10.1007/s00449-026-03284-z","url":null,"abstract":"","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117812","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-04DOI: 10.1007/s00449-026-03289-8
Dewei Dai, Shuyi Chu, Qiankun Wang, Jibo Xiao
Biological treatment of high-strength (above 500 mg/L NO3--N) nitrate wastewater is often limited by process instability, nitrite accumulation and nitrous oxide (N2O) emissions. This study developed a synergistic biochar-bacteria hybrid system by coupling a non-N2O-accumulating denitrifier (Citrobacter freundii XY-1) with biochar (BC550) derived from spent mushroom substrate. Pyrolyzed at 550 ℃, BC550 exhibited high electron transfer capacity and served as a multifunctional carrier, facilitating biofilm formation and enabling high-rate nitrate removal. In a continuous-flow biofilter treating 1200 mg/L NO3--N, the system maintained a nitrate removal efficiency exceeding 97.5% for over 100 days at a hydraulic retention time of 15 h and C/N ratio of 10, with effluent nitrite consistently below 3 mg/L. Microbial community analysis confirmed the stable dominance of the inoculated XY-1 strain (39.7%), demonstrating successful bioaugmentation and system resilience. This work presents a stable and environmentally friendly hybrid system for high-strength nitrate removal, achieved through the rational coupling of functional biochar with a specific beneficial microorganism to ensure high treatment efficiency and mitigate N2O emission risk.
{"title":"Development of a stable biochar-bacteria hybrid system with a non-N<sub>2</sub>O-accumulating denitrifier for efficient high-strength nitrate wastewater treatment.","authors":"Dewei Dai, Shuyi Chu, Qiankun Wang, Jibo Xiao","doi":"10.1007/s00449-026-03289-8","DOIUrl":"https://doi.org/10.1007/s00449-026-03289-8","url":null,"abstract":"<p><p>Biological treatment of high-strength (above 500 mg/L NO<sub>3</sub><sup>-</sup>-N) nitrate wastewater is often limited by process instability, nitrite accumulation and nitrous oxide (N<sub>2</sub>O) emissions. This study developed a synergistic biochar-bacteria hybrid system by coupling a non-N<sub>2</sub>O-accumulating denitrifier (Citrobacter freundii XY-1) with biochar (BC550) derived from spent mushroom substrate. Pyrolyzed at 550 ℃, BC550 exhibited high electron transfer capacity and served as a multifunctional carrier, facilitating biofilm formation and enabling high-rate nitrate removal. In a continuous-flow biofilter treating 1200 mg/L NO<sub>3</sub><sup>-</sup>-N, the system maintained a nitrate removal efficiency exceeding 97.5% for over 100 days at a hydraulic retention time of 15 h and C/N ratio of 10, with effluent nitrite consistently below 3 mg/L. Microbial community analysis confirmed the stable dominance of the inoculated XY-1 strain (39.7%), demonstrating successful bioaugmentation and system resilience. This work presents a stable and environmentally friendly hybrid system for high-strength nitrate removal, achieved through the rational coupling of functional biochar with a specific beneficial microorganism to ensure high treatment efficiency and mitigate N<sub>2</sub>O emission risk.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-04DOI: 10.1007/s00449-026-03286-x
Yang Zhou, Jie Zhang, QingQing Wang, Qingyuan Wang, Junhui Liu, Xiaotong Chen, Yingying Guo, Mingming Sun, Liyun Sun, Zhaoxu Peng
Low influent carbon-to-nitrogen (C/N) ratios often limit denitrification in municipal wastewater treatment systems. This study evaluated denitrification performance in a full-scale anaerobic-anoxic-oxic (AAO) process equipped with a 6 m-deep anoxic tank containing spherical fixed carriers. Sludge flocs and carrier-attached biofilms were sampled at depths of 1 m, 3 m and 5 m along the horizontal flow path. Denitrification kinetics were quantified using batch tests, and microbial community structures were analyzed by 16 S rRNA gene sequencing. Sludge flocs exhibited the highest denitrification rates at 1 m, whereas biofilms performed optimally at 3 m. Along the horizontal direction, sludge flocs near the influent and external carbon dosing site showed enhanced denitrification, while biofilms downstream of the propeller demonstrated improved denitrification. Elevated dissolved oxygen (DO) introduced by internal reflow reduced the effective utilization of the external carbon source. Nitrosomonas was more abundant in sludge flocs, whereas Thauera dominated denitrifying community and peaked at 3 m in biofilms. Based on the spatial distribution of denitrification kinetics and microbial communities, the conventional "pre and top" carbon dosing strategy was re-evaluated, and an optimized "post and top" dosing strategy was proposed. This strategy reduced chemical oxygen demand (COD) consumption per unit of total nitrogen (TN) removed by 16%, providing a practical approach to enhance denitrification efficiency and external carbon utilization in full-scale anoxic tanks.
{"title":"Denitrification performance enhanced by optimizing the sites of external carbon addition in a full-scale anoxic tank.","authors":"Yang Zhou, Jie Zhang, QingQing Wang, Qingyuan Wang, Junhui Liu, Xiaotong Chen, Yingying Guo, Mingming Sun, Liyun Sun, Zhaoxu Peng","doi":"10.1007/s00449-026-03286-x","DOIUrl":"https://doi.org/10.1007/s00449-026-03286-x","url":null,"abstract":"<p><p>Low influent carbon-to-nitrogen (C/N) ratios often limit denitrification in municipal wastewater treatment systems. This study evaluated denitrification performance in a full-scale anaerobic-anoxic-oxic (AAO) process equipped with a 6 m-deep anoxic tank containing spherical fixed carriers. Sludge flocs and carrier-attached biofilms were sampled at depths of 1 m, 3 m and 5 m along the horizontal flow path. Denitrification kinetics were quantified using batch tests, and microbial community structures were analyzed by 16 S rRNA gene sequencing. Sludge flocs exhibited the highest denitrification rates at 1 m, whereas biofilms performed optimally at 3 m. Along the horizontal direction, sludge flocs near the influent and external carbon dosing site showed enhanced denitrification, while biofilms downstream of the propeller demonstrated improved denitrification. Elevated dissolved oxygen (DO) introduced by internal reflow reduced the effective utilization of the external carbon source. Nitrosomonas was more abundant in sludge flocs, whereas Thauera dominated denitrifying community and peaked at 3 m in biofilms. Based on the spatial distribution of denitrification kinetics and microbial communities, the conventional \"pre and top\" carbon dosing strategy was re-evaluated, and an optimized \"post and top\" dosing strategy was proposed. This strategy reduced chemical oxygen demand (COD) consumption per unit of total nitrogen (TN) removed by 16%, providing a practical approach to enhance denitrification efficiency and external carbon utilization in full-scale anoxic tanks.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146117779","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-10-21DOI: 10.1007/s00449-025-03244-z
Ke Xin Eer, Roshanida A Rahman, Nur Aizura Mat Alewi
Electrospun nanofibers have attracted significant interest due to their high surface area-to-volume ratio, porosity, interconnected voids, and advantageous mechanical, chemical, and physical properties. Enzymes, known for its exceptional catalytic properties, are promising candidates for various industrial applications. However, the use of free enzymes is limited by challenges such as poor recyclability and susceptibility to environmental factors. Immobilization techniques offer a viable solution by enhancing the stability and activity of enzymes. This review compares four enzyme immobilization methods to identify the most effective strategy and focuses on the various approaches to optimize electrospinning methods, as well as parameters to maximize enzyme loading, activity retention, and stability. Among the various immobilization methods, entrapment and encapsulation of enzymes within electrospun nanofibers have garnered significant attention in recent years. The review discusses the applications and challenges associated with enzyme entrapment and encapsulation using electrospinning. Overall, advancements in electrospun nanofibers with encapsulated or entrapped enzymes highlight their potential as robust, efficient, and sustainable platforms for biosensors, therapeutics, antimicrobial applications, smart textiles, as well as food and wastewater treatment processes. Subsequently, future research should focus on scalable electrospinning processes, the development of eco-friendly materials, long-term enzyme stability, multi-enzyme systems, and a deeper mechanistic understanding to further enhance performance and safety.
{"title":"Progress on encapsulation and entrapment of enzymes in electrospun nanofibers.","authors":"Ke Xin Eer, Roshanida A Rahman, Nur Aizura Mat Alewi","doi":"10.1007/s00449-025-03244-z","DOIUrl":"10.1007/s00449-025-03244-z","url":null,"abstract":"<p><p>Electrospun nanofibers have attracted significant interest due to their high surface area-to-volume ratio, porosity, interconnected voids, and advantageous mechanical, chemical, and physical properties. Enzymes, known for its exceptional catalytic properties, are promising candidates for various industrial applications. However, the use of free enzymes is limited by challenges such as poor recyclability and susceptibility to environmental factors. Immobilization techniques offer a viable solution by enhancing the stability and activity of enzymes. This review compares four enzyme immobilization methods to identify the most effective strategy and focuses on the various approaches to optimize electrospinning methods, as well as parameters to maximize enzyme loading, activity retention, and stability. Among the various immobilization methods, entrapment and encapsulation of enzymes within electrospun nanofibers have garnered significant attention in recent years. The review discusses the applications and challenges associated with enzyme entrapment and encapsulation using electrospinning. Overall, advancements in electrospun nanofibers with encapsulated or entrapped enzymes highlight their potential as robust, efficient, and sustainable platforms for biosensors, therapeutics, antimicrobial applications, smart textiles, as well as food and wastewater treatment processes. Subsequently, future research should focus on scalable electrospinning processes, the development of eco-friendly materials, long-term enzyme stability, multi-enzyme systems, and a deeper mechanistic understanding to further enhance performance and safety.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":"211-242"},"PeriodicalIF":3.6,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12948830/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145336452","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-01Epub Date: 2025-11-08DOI: 10.1007/s00449-025-03255-w
Nour Elislam Mougari, Djamal Eddine Ghersi, Farida Iachachene, Jean François Largeau, Müslüm Arici
The rising global demand for sustainable energy has directed significant attention towards biohydrogen production via dark fermentation of organic wastes. Accurate yield prediction is crucial for optimizing process conditions and enhancing overall process. This study aims to develop a robust and interpretable predictive framework that integrates kinetic modeling with a hybrid Bayesian Optimization-Artificial Neural Network (BO-ANN) approach for precise biohydrogen yield prediction. The core novelty lies in representing each substrate not as a simple category, but by its quantitative kinetic parameters from the Modified Gompertz equation, providing a biologically meaningful input. A comprehensive database compiled from the literature incorporates key process variables, including temperature, pH, residence time, and substrate concentration, along with kinetic parameters from the Modified Gompertz equation characterizing each substrate. The BO algorithm was employed to optimize the ANN architecture, and 5-fold cross-validation was used to evaluate model generalization ability. The proposed hybrid model achieved outstanding predictive performance (R² = 0.9980, RMSE = 0.0117, MAE = 0.0062), confirming its accuracy and robustness. Furthermore, SHAP analysis and correlation metrics provided interpretable insights into feature contributions, particularly the relevance of kinetic descriptors. Overall, the proposed BO-ANN framework offers a scalable, interpretable, and biologically grounded tool to improve predictive accuracy and support the design of more efficient and sustainable biohydrogen production systems.
全球对可持续能源不断增长的需求已经引起了人们对通过有机废物暗发酵生产生物氢的极大关注。准确的良率预测是优化工艺条件和提高整体工艺水平的关键。本研究旨在开发一种鲁棒且可解释的预测框架,该框架将动力学建模与混合贝叶斯优化-人工神经网络(BO-ANN)方法相结合,用于精确的生物氢产量预测。其核心新颖之处在于,它不是将每种基质作为一个简单的类别来表示,而是通过修正Gompertz方程中的定量动力学参数来表示,从而提供了具有生物学意义的输入。从文献中编译的综合数据库包含关键过程变量,包括温度,pH值,停留时间和底物浓度,以及表征每种底物的修正Gompertz方程的动力学参数。采用BO算法优化神经网络结构,采用5次交叉验证评价模型泛化能力。所提出的混合模型取得了较好的预测效果(R²= 0.9980,RMSE = 0.0117, MAE = 0.0062),验证了模型的准确性和鲁棒性。此外,SHAP分析和相关指标为特征贡献提供了可解释的见解,特别是动力学描述符的相关性。总体而言,提出的BO-ANN框架提供了一个可扩展、可解释和基于生物的工具,以提高预测准确性,并支持设计更高效和可持续的生物制氢系统。
{"title":"A generalized hybrid machine learning framework for predicting biohydrogen production via dark fermentation of organic wastes.","authors":"Nour Elislam Mougari, Djamal Eddine Ghersi, Farida Iachachene, Jean François Largeau, Müslüm Arici","doi":"10.1007/s00449-025-03255-w","DOIUrl":"10.1007/s00449-025-03255-w","url":null,"abstract":"<p><p>The rising global demand for sustainable energy has directed significant attention towards biohydrogen production via dark fermentation of organic wastes. Accurate yield prediction is crucial for optimizing process conditions and enhancing overall process. This study aims to develop a robust and interpretable predictive framework that integrates kinetic modeling with a hybrid Bayesian Optimization-Artificial Neural Network (BO-ANN) approach for precise biohydrogen yield prediction. The core novelty lies in representing each substrate not as a simple category, but by its quantitative kinetic parameters from the Modified Gompertz equation, providing a biologically meaningful input. A comprehensive database compiled from the literature incorporates key process variables, including temperature, pH, residence time, and substrate concentration, along with kinetic parameters from the Modified Gompertz equation characterizing each substrate. The BO algorithm was employed to optimize the ANN architecture, and 5-fold cross-validation was used to evaluate model generalization ability. The proposed hybrid model achieved outstanding predictive performance (R² = 0.9980, RMSE = 0.0117, MAE = 0.0062), confirming its accuracy and robustness. Furthermore, SHAP analysis and correlation metrics provided interpretable insights into feature contributions, particularly the relevance of kinetic descriptors. Overall, the proposed BO-ANN framework offers a scalable, interpretable, and biologically grounded tool to improve predictive accuracy and support the design of more efficient and sustainable biohydrogen production systems.</p>","PeriodicalId":9024,"journal":{"name":"Bioprocess and Biosystems Engineering","volume":" ","pages":"351-372"},"PeriodicalIF":3.6,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145470444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}