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Fecal microbiota changes associated with pathogenic and non-pathogenic diarrheas in foals.
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-23 DOI: 10.1186/s13104-025-07110-9
Yijun Shi, Elizabeth A Maga, Michael J Mienaltowski

Objectives: Diarrhea is a common disease that could threaten the welfare of newborn foals. While there are several forms of foal diarrhea, the etiologies can be considered known pathogenic or non-pathogenic in nature. Moreover, there are likely differences in the composition of microbial populations in the gastrointestinal tracts of foals depending upon the etiology of diarrhea. Our study aims to examine the microbial population in the feces of foals with both pathogenic and non-pathogenic diarrheas to discern differences in their microbial compositions.

Results: Foal diarrhea samples tested positive or negative for common equine neonatal diarrhea pathogens by diagnostic polymerase chain reaction (PCR), which allowed for samples to be segregated as pathogenic or non-pathogenic. Pathogenic samples tested positive for combinations of Clostridium perfringens and/or Clostridioides difficile toxins. As a result, significantly higher alpha diversity was seen in the non-pathogenic samples than in pathogenic ones. Sequencing of the V4 domains of bacterial 16 S rRNA genes demonstrated that non-pathogenic samples had more alpha diversity. Furthermore, eight microbial families and eleven genera showed significant differences in their abundances between pathogenic and non-pathogenic diarrhea samples.

{"title":"Fecal microbiota changes associated with pathogenic and non-pathogenic diarrheas in foals.","authors":"Yijun Shi, Elizabeth A Maga, Michael J Mienaltowski","doi":"10.1186/s13104-025-07110-9","DOIUrl":"https://doi.org/10.1186/s13104-025-07110-9","url":null,"abstract":"<p><strong>Objectives: </strong>Diarrhea is a common disease that could threaten the welfare of newborn foals. While there are several forms of foal diarrhea, the etiologies can be considered known pathogenic or non-pathogenic in nature. Moreover, there are likely differences in the composition of microbial populations in the gastrointestinal tracts of foals depending upon the etiology of diarrhea. Our study aims to examine the microbial population in the feces of foals with both pathogenic and non-pathogenic diarrheas to discern differences in their microbial compositions.</p><p><strong>Results: </strong>Foal diarrhea samples tested positive or negative for common equine neonatal diarrhea pathogens by diagnostic polymerase chain reaction (PCR), which allowed for samples to be segregated as pathogenic or non-pathogenic. Pathogenic samples tested positive for combinations of Clostridium perfringens and/or Clostridioides difficile toxins. As a result, significantly higher alpha diversity was seen in the non-pathogenic samples than in pathogenic ones. Sequencing of the V4 domains of bacterial 16 S rRNA genes demonstrated that non-pathogenic samples had more alpha diversity. Furthermore, eight microbial families and eleven genera showed significant differences in their abundances between pathogenic and non-pathogenic diarrhea samples.</p>","PeriodicalId":9234,"journal":{"name":"BMC Research Notes","volume":"18 1","pages":"34"},"PeriodicalIF":1.6,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143027974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cooking with confidence for autistic youth: outcomes from a pilot program evaluation model.
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-23 DOI: 10.1186/s13104-025-07105-6
Mi-Yeet Wong, Conner Carlton, Shelby Paul, Jonathan Deutsch, Rachel Sherman, Brandy-Joe Milliron, Nicole Farmer, Rachel Hingst, Claire Richardson, Lindsay Shea

Objective: This article outlines the evaluation model for the Cooking with Confidence (CWC) program, developed using Bandura's Social Learning Theory as its conceptual framework. The evaluation aimed to: (1) Examine participant characteristics in the CWC program, (2) Assess changes in cooking knowledge, skill acquisition, self-efficacy, and confidence, and (3) Identify barriers and facilitators to participant engagement. CWC is a community-based educational program designed to help autistic young adults develop independent living skills and promote health through hands-on cooking classes. Recognizing the need for more opportunities for autistic individuals to practice these skills, the program was created through public and private partnerships. A pre-post study design was employed, with participants completing surveys before and after their involvement in the program.

Results: Participants reported high satisfaction with the program and showed improvements in cooking knowledge and self-efficacy. The analysis also highlighted participant characteristics, as well as key barriers and facilitators to cooking. Overall, the CWC program demonstrated positive outcomes, with findings offering valuable insights for future program development to enhance its impact.

{"title":"Cooking with confidence for autistic youth: outcomes from a pilot program evaluation model.","authors":"Mi-Yeet Wong, Conner Carlton, Shelby Paul, Jonathan Deutsch, Rachel Sherman, Brandy-Joe Milliron, Nicole Farmer, Rachel Hingst, Claire Richardson, Lindsay Shea","doi":"10.1186/s13104-025-07105-6","DOIUrl":"10.1186/s13104-025-07105-6","url":null,"abstract":"<p><strong>Objective: </strong>This article outlines the evaluation model for the Cooking with Confidence (CWC) program, developed using Bandura's Social Learning Theory as its conceptual framework. The evaluation aimed to: (1) Examine participant characteristics in the CWC program, (2) Assess changes in cooking knowledge, skill acquisition, self-efficacy, and confidence, and (3) Identify barriers and facilitators to participant engagement. CWC is a community-based educational program designed to help autistic young adults develop independent living skills and promote health through hands-on cooking classes. Recognizing the need for more opportunities for autistic individuals to practice these skills, the program was created through public and private partnerships. A pre-post study design was employed, with participants completing surveys before and after their involvement in the program.</p><p><strong>Results: </strong>Participants reported high satisfaction with the program and showed improvements in cooking knowledge and self-efficacy. The analysis also highlighted participant characteristics, as well as key barriers and facilitators to cooking. Overall, the CWC program demonstrated positive outcomes, with findings offering valuable insights for future program development to enhance its impact.</p>","PeriodicalId":9234,"journal":{"name":"BMC Research Notes","volume":"18 1","pages":"35"},"PeriodicalIF":1.6,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143027972","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Remodeling the light-adapted electroretinogram using a bayesian statistical approach.
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-23 DOI: 10.1186/s13104-025-07115-4
Marek Brabec, Fernando Marmolejo-Ramos, Lynne Loh, Irene O Lee, Mikhail Kulyabin, Aleksei Zhdanov, Hugo Posada-Quintero, Dorothy A Thompson, Paul A Constable

Objective: To present a remodeling of the electroretinogram waveform using a covariance matrix to identify regions of interest and distinction between a control and attention deficit/hyperactivity disorder (ADHD) group. Electroretinograms were recorded in n = 25 ADHD (16 male; age 11.9 ± 2.7 years) and n = 38 (8 male; age 10.4 ± 2.8 years neurotypical control participants as part of a broad study into the determining if the electroretinogram could be a biomarker for ADHD. Flash strengths of 0.6 and 1.2 log cd.s.m- 2 on a white 40 cd.m- 2 background were used. Averaged waveforms from each eye and flash strength were analyzed with Bayesian regularization of the covariance matrices using 100 equal length time intervals. The eigenvalues of the covariance matrices were ranked for each group to indicate the degree of complexity within the regularized waveforms.

Results: The correlation matrices indicated less correlation within the waveforms for the ADHD group in time intervals beyond 70 msec. The eigenvalue plots suggest more complexity within the ADHD group compared to the control group. Consideration of the correlation structure between ERG waveforms from different populations may reveal additional features for identifying group differences in clinical populations.

{"title":"Remodeling the light-adapted electroretinogram using a bayesian statistical approach.","authors":"Marek Brabec, Fernando Marmolejo-Ramos, Lynne Loh, Irene O Lee, Mikhail Kulyabin, Aleksei Zhdanov, Hugo Posada-Quintero, Dorothy A Thompson, Paul A Constable","doi":"10.1186/s13104-025-07115-4","DOIUrl":"https://doi.org/10.1186/s13104-025-07115-4","url":null,"abstract":"<p><strong>Objective: </strong>To present a remodeling of the electroretinogram waveform using a covariance matrix to identify regions of interest and distinction between a control and attention deficit/hyperactivity disorder (ADHD) group. Electroretinograms were recorded in n = 25 ADHD (16 male; age 11.9 ± 2.7 years) and n = 38 (8 male; age 10.4 ± 2.8 years neurotypical control participants as part of a broad study into the determining if the electroretinogram could be a biomarker for ADHD. Flash strengths of 0.6 and 1.2 log cd.s.m<sup>- 2</sup> on a white 40 cd.m<sup>- 2</sup> background were used. Averaged waveforms from each eye and flash strength were analyzed with Bayesian regularization of the covariance matrices using 100 equal length time intervals. The eigenvalues of the covariance matrices were ranked for each group to indicate the degree of complexity within the regularized waveforms.</p><p><strong>Results: </strong>The correlation matrices indicated less correlation within the waveforms for the ADHD group in time intervals beyond 70 msec. The eigenvalue plots suggest more complexity within the ADHD group compared to the control group. Consideration of the correlation structure between ERG waveforms from different populations may reveal additional features for identifying group differences in clinical populations.</p>","PeriodicalId":9234,"journal":{"name":"BMC Research Notes","volume":"18 1","pages":"33"},"PeriodicalIF":1.6,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143027976","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Results comparison of cervical cancer early detection using cerviray ® with VIA test.
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-22 DOI: 10.1186/s13104-025-07086-6
Ali Budi Harsono, Hadi Susiarno, Dodi Suardi, Kemala Isnainiasih Mantilidewi, Viko Duvadilan Wibowo, Yudi Mulyana Hidayat

Objectives: This study investigates the performance of artificial intelligence (AI) technology, namely Cerviray AI®, compared with Cerviray® expert, aiming to compare its sensitivity, specificity, positive predictive value (PPV), and area under the receiver operating characteristic curve (AUC ROC). The Visual Inspection with Acetic Acid (VIA) test is used as the gold standard.

Results: The study involved 44 patients from various health centers in West Java Province. Performance of Cerviray AI®, or Cerviray® expert, and lastly VIA tests were compared in their ability to detect pre-cancerous cervical lesions in high-risk women of childbearing age. The current study indicated that Cerviray AI® had a sensitivity of 42.9%, specificity of 100%, PPV of 100%, and ROC AUC values of 71.4%. In comparison, the evaluation of the Cerviray® expert demonstrated a sensitivity of 71.4%, specificity of 97.3%, PPV of 83.3%, and ROC AUC values of 84.4%. In conclusion, the evaluation of Cerviray® expert outperformed Cerviray AI® in ROC AUC values.

Trial registration: Clinical Trials.gov Identifier NCT06518070 Retrospectively registered.

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引用次数: 0
Pain detection using biometric information acquired by a wristwatch wearable device: a pilot study of spontaneous menstrual pain in healthy females.
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-22 DOI: 10.1186/s13104-025-07098-2
Hideyuki Hirayama, Shiori Yoshida, Konosuke Sasaki, Emi Yuda, Yutaka Yoshida, Mitsunori Miyashita

Objective: Pain is subjective, and self-reporting pain might be challenging. Studies conducted to detect pain using biological signals and real-time self-reports pain are limited. We evaluated the feasibility of collecting pain data on healthy females' menstrual pain and conducted preliminary analysis.

Results: Five healthy adult females participated. They wore two wristwatch devices (Silmee and Fitbit) and a Holter ECG (electrocardiogram) during menstruation to record the pain intensity and timing. Subsequently, we analyzed the correlation between heart and pulse rates and assessed pre- and post-pain biometric differences. We collected sixty pain records from five participants. The correlation coefficients between heart rate and pulse rate ranged from 0.79 to 0.95 with Holter ECG vs. Fitbit and 0.32 to 0.74 with Holter ECG vs. Silmee. Analysis revealed significant changes in motion frequency post-pain (p = 0.04). For abdominal pain with a numerical rating scale score of ≥ 4 (n = 13), motion frequency (p < 0.001) and pulse rate (p = 0.02) showed significant differences post-pain compared to baseline values. Healthy females could wear the wristwatch device in daily life and report pain in real time. Wristwatch devices can effectively collect biological data to detect moderate pain by focusing on acceleration and pulse rate.

{"title":"Pain detection using biometric information acquired by a wristwatch wearable device: a pilot study of spontaneous menstrual pain in healthy females.","authors":"Hideyuki Hirayama, Shiori Yoshida, Konosuke Sasaki, Emi Yuda, Yutaka Yoshida, Mitsunori Miyashita","doi":"10.1186/s13104-025-07098-2","DOIUrl":"https://doi.org/10.1186/s13104-025-07098-2","url":null,"abstract":"<p><strong>Objective: </strong>Pain is subjective, and self-reporting pain might be challenging. Studies conducted to detect pain using biological signals and real-time self-reports pain are limited. We evaluated the feasibility of collecting pain data on healthy females' menstrual pain and conducted preliminary analysis.</p><p><strong>Results: </strong>Five healthy adult females participated. They wore two wristwatch devices (Silmee and Fitbit) and a Holter ECG (electrocardiogram) during menstruation to record the pain intensity and timing. Subsequently, we analyzed the correlation between heart and pulse rates and assessed pre- and post-pain biometric differences. We collected sixty pain records from five participants. The correlation coefficients between heart rate and pulse rate ranged from 0.79 to 0.95 with Holter ECG vs. Fitbit and 0.32 to 0.74 with Holter ECG vs. Silmee. Analysis revealed significant changes in motion frequency post-pain (p = 0.04). For abdominal pain with a numerical rating scale score of ≥ 4 (n = 13), motion frequency (p < 0.001) and pulse rate (p = 0.02) showed significant differences post-pain compared to baseline values. Healthy females could wear the wristwatch device in daily life and report pain in real time. Wristwatch devices can effectively collect biological data to detect moderate pain by focusing on acceleration and pulse rate.</p>","PeriodicalId":9234,"journal":{"name":"BMC Research Notes","volume":"18 1","pages":"31"},"PeriodicalIF":1.6,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143027975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Interrupted time series datasets from studies investigating the impact of interventions or exposures in public health and social science: a data note.
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-22 DOI: 10.1186/s13104-024-07055-5
Simon L Turner, Elizabeth Korevaar, Amalia Karahalios, Andrew B Forbes, Joanne E McKenzie

Objectives: The interrupted time series (ITS) design is commonly used to investigate the impact of an intervention or exposure in public health. There are many statistical methods that can be used to analyse ITS data and to meta-analyse their results. We undertook two empirical studies to investigate: (i) how effect estimates (and associated statistics) compared when six statistical methods were applied to 190 real-world datasets; and (ii) how meta-analysis effect estimates (and associated statistics) compared when the combinations of two ITS analysis methods and five meta-analysis methods were applied to 17 real-world meta-analyses including 283 ITS datasets. Here we present a curated repository of a subset of ITS datasets from these studies.

Data description: The repository includes 430 ITS datasets curated from the two empirical studies. The datasets are diverse in the populations, interruptions and outcomes examined, and are methodologically diverse in the outcome types, aggregation time intervals, number of timepoints and segments. Most of the datasets are from public health. For each dataset, we provide the outcome value at each timepoint and the segment (indicating different interruptions), along with characteristics of the dataset. This repository may be of value for future research of ITS studies, and as a source of examples of ITS for use in teaching.

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引用次数: 0
Measuring social integration, treatment, and mortality after substance use treatment: methodological elaborations in a 20-year follow-up study. 测量社会融合、治疗和药物使用治疗后的死亡率:20年随访研究的方法学阐述。
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 DOI: 10.1186/s13104-025-07108-3
Tove Sohlberg, Jessica Storbjörk, Peter Wennberg

Objective: Alcohol and Other Drug (AOD) disorders cause substantial harm. Effective Substance Use Treatment (SUT) exists, but long-term outcomes remain inconclusive. This study used a 20-year prospective follow-up of 1248 service users entering SUT in Stockholm, Sweden, in 2000-2002 to elaborate on how different dimensions of long-term outcomes may be measured by register-based indicators. Baseline characteristics and attrition bias were explicated, and register-based outcomes were examined.

Results: Register-based indicators are valuable, but they also have inherent limitations such as the lack of substance use data and inability to differentiate between un/met treatment needs and access. Significant variations in long-term outcomes were evident depending on which register-based indicator was used, and whether used in isolation or combinations. Six out of 10 service users were still alive after 20 years, but as many as 8 out of 10 of the survivors remained in treatment, and only two out of 10 had a stable economic situation. Hence, the register indicators identified only a few survivors, with stable economic and social situations, and without recent treatment contacts 20 years after treatment entry. The long-term outcomes were concerning and even more so when combining outcome dimensions.

目的:酒精和其他药物(AOD)障碍造成实质性危害。有效的药物使用治疗(SUT)是存在的,但长期结果仍不确定。本研究对2000-2002年在瑞典斯德哥尔摩进入SUT的1248名服务用户进行了20年的前瞻性随访,以详细说明如何通过基于登记册的指标来衡量长期结果的不同维度。对基线特征和减员偏差进行了解释,并对基于登记的结果进行了检查。结果:基于登记册的指标是有价值的,但它们也有固有的局限性,如缺乏物质使用数据和无法区分未满足的治疗需求和可及性。根据使用哪种基于登记册的指标,以及是单独使用还是联合使用,长期结果明显存在显著差异。20年后,每10名服务使用者中有6人仍然活着,但幸存者中有8人仍在接受治疗,10人中只有2人的经济状况稳定。因此,登记指标只确定了少数幸存者,他们的经济和社会状况稳定,在接受治疗20年后没有最近的治疗接触。长期结果令人担忧,当结合结果维度时更是如此。
{"title":"Measuring social integration, treatment, and mortality after substance use treatment: methodological elaborations in a 20-year follow-up study.","authors":"Tove Sohlberg, Jessica Storbjörk, Peter Wennberg","doi":"10.1186/s13104-025-07108-3","DOIUrl":"10.1186/s13104-025-07108-3","url":null,"abstract":"<p><strong>Objective: </strong>Alcohol and Other Drug (AOD) disorders cause substantial harm. Effective Substance Use Treatment (SUT) exists, but long-term outcomes remain inconclusive. This study used a 20-year prospective follow-up of 1248 service users entering SUT in Stockholm, Sweden, in 2000-2002 to elaborate on how different dimensions of long-term outcomes may be measured by register-based indicators. Baseline characteristics and attrition bias were explicated, and register-based outcomes were examined.</p><p><strong>Results: </strong>Register-based indicators are valuable, but they also have inherent limitations such as the lack of substance use data and inability to differentiate between un/met treatment needs and access. Significant variations in long-term outcomes were evident depending on which register-based indicator was used, and whether used in isolation or combinations. Six out of 10 service users were still alive after 20 years, but as many as 8 out of 10 of the survivors remained in treatment, and only two out of 10 had a stable economic situation. Hence, the register indicators identified only a few survivors, with stable economic and social situations, and without recent treatment contacts 20 years after treatment entry. The long-term outcomes were concerning and even more so when combining outcome dimensions.</p>","PeriodicalId":9234,"journal":{"name":"BMC Research Notes","volume":"18 1","pages":"27"},"PeriodicalIF":1.6,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11749105/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143000443","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing ophthalmology education through a mobile flipped classroom: a new teaching method. 利用移动翻转课堂加强眼科教育:一种新的教学方法。
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 DOI: 10.1186/s13104-025-07104-7
Maryam Yadgari, Masomeh Kalantarion, Mohammad-Mehdi Sadoughi, Soleiman Ahmady, Mohammad-Hasan Shahriari

Objective: Glaucoma is a major cause of irreversible blindness globally. Optical coherence tomography (OCT) aids early glaucoma diagnosis. Interpreting OCT scans requires familiarity with the technology and image analysis. This study aimed to evaluate the effects of a mobile flipped classroom model on learning outcomes and satisfaction for teaching optical coherence tomography (OCT) interpretation skills in glaucoma.

Results: In this quasi-experimental pre/post-test study, a total of 22 ophthalmology residents participated in a 4-session mobile flipped classroom educational intervention (90 min/session) and were assessed on OCT interpretation. Learning was measured via pre/post-tests designed by a panel. Satisfaction was assessed using a validated questionnaire. Mean participant age was 29.42 (± 2.09) years. Compared to pre-intervention, post-test scores showed significant improvement after the mobile flipped classroom (p < 0.001). Mean satisfaction score was 74.05 (± 16.09), denoting high satisfaction. Implementing a mobile flipped classroom significantly improved OCT interpretation skills and was associated with high satisfaction ratings among ophthalmology residents. This model shows promise for enhancing clinical knowledge in graduate medical education.

目的:青光眼是全球范围内不可逆失明的主要原因。光学相干断层扫描(OCT)有助于青光眼的早期诊断。解释OCT扫描需要熟悉技术和图像分析。本研究旨在评估移动翻转课堂模式对青光眼学生光学相干断层扫描(OCT)口译技能教学效果和满意度的影响。结果:在准实验前/后测试研究中,共有22名眼科住院医师参加了4次移动翻转课堂教育干预(90分钟/次),并对OCT口译进行了评估。学习通过一个小组设计的前/后测试来测量。满意度评估使用有效的问卷。参与者平均年龄为29.42(±2.09)岁。与干预前相比,移动翻转课堂后的测试后得分有显著提高(p
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引用次数: 0
CRYβB2 alters cell adhesion to promote invasion in a triple-negative breast cancer cell line. CRYβB2在三阴性乳腺癌细胞系中改变细胞粘附促进侵袭
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 DOI: 10.1186/s13104-025-07090-w
Amr A Waly, London Harper, Jodie M Fleming, Lindsey M Costantini

Objective: African American women with breast cancer experience disproportionately poor survival outcomes, primarily due to the high prevalence of the deadliest subtype; triple-negative breast cancer (TNBC). The CRYβB2 gene is upregulated in tumors from African American patients across all breast cancer subtypes, including TNBC, and is associated with worse survival rates. This study investigated the effect of CRYβB2 on the invasion of TNBC cells and the underlying mechanisms contributing to this phenotype.

Results: We utilized the SUM159 cells with stable CRYβB2 overexpression in a 3D-culture tumor spheroids model in our investigation. A quantitative 3D invasion assay demonstrated that CRYβB2 overexpression significantly enhanced invasion (median invasion %; SUM159 = 0.14 and SUM159 + CRYβB2 = 0.33). RNA sequencing analysis indicated that CRYβB2 overexpression modulated cell-cell adhesion and extracellular matrix organization pathways, which are critical to invasion of cancer cells. Specifically, CRYβB2 suppressed the expression of key cell-cell adhesion genes known as clustered protocadherins and promoted the expression of PCDH7, a nonclustered protocadherin with known oncogenic roles in various cancers. Notably, the knockout of PCDH7 diminished the invasive capacity induced by CRYβB2 (median invasion %; SUM159 = 0.093, SUM159 + CRYβB2 = 0.184 and SUM159 + CRYβB2/PCDH7-/-=0.082). These findings provide a novel link between a previously identified differentially expressed gene, CRYβB2, in driving breast cancer phenotypes by modulating a class of adhesion proteins.

目的:非裔美国女性乳腺癌患者的生存结果不成比例地差,主要是由于最致命亚型的高患病率;三阴性乳腺癌(TNBC)。CRYβB2基因在所有乳腺癌亚型(包括TNBC)的非裔美国患者的肿瘤中表达上调,并与较差的生存率相关。本研究探讨了CRYβB2对TNBC细胞侵袭的影响及其导致这种表型的潜在机制。结果:我们将CRYβB2稳定过表达的SUM159细胞用于3d培养的肿瘤球体模型。定量3D侵袭实验显示,cryb β b2过表达显著增强侵袭(侵袭中位数%;SUM159 = 0.14, SUM159 + cryb β b2 = 0.33)。RNA测序分析表明,CRYβB2过表达调节细胞-细胞粘附和细胞外基质组织通路,这是癌细胞侵袭的关键。具体来说,CRYβB2抑制了关键细胞粘附基因簇状原钙粘蛋白的表达,并促进了PCDH7的表达,PCDH7是一种非簇状原钙粘蛋白,已知在各种癌症中具有致癌作用。值得注意的是,敲除PCDH7可降低cryb β b2诱导的侵袭能力(侵袭中位数%;SUM159 = 0.093, SUM159 +哭βB2 = 0.184和SUM159 +哭βB2 / PCDH7 - / - = 0.082)。这些发现提供了先前发现的差异表达基因CRYβB2通过调节一类粘附蛋白来驱动乳腺癌表型之间的新联系。
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引用次数: 0
RAB3GAP2 dysregulation in adult T-cell leukemia/lymphoma (ATLL) compared to acute lymphoblastic leukemia (ALL): a molecular perspective. RAB3GAP2在成人t细胞白血病/淋巴瘤(ATLL)和急性淋巴细胞白血病(ALL)中的失调:分子视角
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 DOI: 10.1186/s13104-025-07084-8
Samira Pourrezaei, Arash Letafati, Ghazale Molaverdi, Mehdi Norouzi, Sayed-Hamidreza Mozhgani

Adult T-cell leukemia/lymphoma (ATLL) is a type of blood cancer related to human T-cell lymphotropic virus type 1 (HTLV-1). The principal aim of this study was to investigate cellular processes related to innate immune response, intracellular protein transport, and translational initiation regulation in individuals afflicted with ATLL and Acute lymphoblastic leukemia (ALL). Whole blood samples and peripheral blood mononuclear cells were collected from 10 viral ATLL patients and 10 ALL subjects. Real-time quantitative PCR was then performed to quantify mRNA expression levels of SMC6, FANCM, EIF4H, WDR7, RAB3GAP2, and IFN α/β. The study revealed some distinctions between ATLL and ALL patients. Particularly, RAB3GAP2 level (P = 0.028) was found to be elevated in ATLL patients compared to ALL. Conversely, expression levels of IFN-β (P = 0.31), SMC6 (P = 0.68), WDR7 (P = 0.43), EIF4H (P = 0.38), and FANCM (P = 0.57) were diminished in ATLL patients in contrast to ALL. These proteins play a pivotal role in both translation and immune activation, suggesting a potential correlation between the observed disparities and the virus-mediated progression of cancer. However, it is worth noting that the expression differences in FANCM, EIF4H, SMC6, and WDR7 between ATLL and ALL were minimal. This proposes that the underlying molecular mechanisms governing ATLL and ALL may largely overlap concerning these cellular processes. However, considerable increased expression of RAB3GAP2 was observed in ATLL compared to ALL.

成人t细胞白血病/淋巴瘤(Adult T-cell leukemia/lymphoma, ATLL)是一种与人t细胞嗜淋巴病毒1型(HTLV-1)相关的血癌。本研究的主要目的是研究与ATLL和急性淋巴细胞白血病(ALL)患者的先天免疫应答、细胞内蛋白转运和翻译起始调控相关的细胞过程。收集10例病毒性atall患者和10例ALL患者的全血和外周血单个核细胞。实时荧光定量PCR检测SMC6、FANCM、EIF4H、WDR7、RAB3GAP2、IFN α/β mRNA表达水平。该研究揭示了atall和ALL患者之间的一些区别。特别是,与ALL相比,ATLL患者的RAB3GAP2水平(P = 0.028)升高。相反,与ALL相比,ATLL患者的IFN-β (P = 0.31)、SMC6 (P = 0.68)、WDR7 (P = 0.43)、EIF4H (P = 0.38)和FANCM (P = 0.57)的表达水平降低。这些蛋白在翻译和免疫激活中起着关键作用,这表明观察到的差异与病毒介导的癌症进展之间存在潜在的相关性。然而,值得注意的是,ATLL和ALL在FANCM、EIF4H、SMC6和WDR7的表达差异很小。这表明控制ATLL和ALL的潜在分子机制可能在这些细胞过程中很大程度上重叠。然而,与ALL相比,ATLL中RAB3GAP2的表达明显增加。
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引用次数: 0
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