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Designing and evaluating a mobile app to assist patients undergoing coronary angiography and assessing its impact on anxiety, stress levels, and self-care. 设计并评估一款手机应用,为接受冠状动脉造影术的患者提供帮助,并评估其对焦虑、压力水平和自我护理的影响。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-08 DOI: 10.1186/s12911-024-02703-z
Milad Safaei, Amin Mahdavi, Roghayeh Mehdipour-Rabori

Background: Coronary artery disease is one of the leading causes of death and disability worldwide. Coronary angiography is a diagnostic procedure used to detect atherosclerosis. Patients typically experience anxiety and stress before and during the angiography procedure. Furthermore, self-care ability is crucial following angiography.

Aim: This study aims to describe the design and evaluation of a mobile application focusing on stress, anxiety, and self-care abilities in patients undergoing coronary angiography.

Method: The researchers developed a mobile application for patients undergoing angiography. The application provides information about angiography and tips for enhancing self-care following the procedure. An interventional study was conducted on 70 patients admitted to the angiography ward in hospitals in Kerman, Iran, between 2022 and 2023. The participants were randomly divided into two groups: control and intervention. The interventional group received the intervention application the night before angiography. Two groups completed the Anxiety and Stress Questionnaire (DAS) and Kearney-Flescher Self-Care Survey before the intervention. The researchers used questionnaires that had been prepared and previously utilized in other studies. The two groups completed the anxiety and stress questionnaire within three to six hours and the self-care questionnaire one month after angiography. SPSS 15 software was used for data analysis, with a significance level set at 0.05.

Results: The study found that the majority of participants were women. Before the study, there was no significant difference between the two groups in terms of anxiety, stress, and self-care scores. However, after the study, the intervention group showed a significant decrease in average anxiety and stress scores (p < 0.001). Additionally, compared to the control group, the intervention group demonstrated significant improvement in average self-care score (p < 0.001).

Conclusion: According to this study, AP can be effective in influencing the anxiety, stress levels, and self-care ability of patients who undergo coronary angiography. It can help to reduce stress and anxiety while increasing self-care. Instructive software is user-friendly, cost-effective, and can be recommended by nurses and doctors.

背景:冠状动脉疾病是导致全球死亡和残疾的主要原因之一。冠状动脉造影术是一种用于检测动脉粥样硬化的诊断程序。患者在血管造影术前和过程中通常会感到焦虑和紧张。此外,血管造影术后的自我护理能力也至关重要。目的:本研究旨在描述一款移动应用程序的设计和评估,重点关注接受冠状动脉造影术患者的压力、焦虑和自我护理能力:研究人员为接受血管造影术的患者开发了一款移动应用程序。方法:研究人员为接受血管造影术的患者开发了一款移动应用程序,该应用程序提供了有关血管造影术的信息以及加强术后自我护理的提示。研究人员在 2022 年至 2023 年期间对伊朗克尔曼医院血管造影病房的 70 名患者进行了干预性研究。参与者被随机分为两组:对照组和干预组。干预组在血管造影术前一晚接受干预治疗。两组人员在干预前分别完成了焦虑与压力问卷(DAS)和卡尼-弗莱彻自理能力调查。研究人员使用的问卷都是事先准备好并在其他研究中使用过的。两组患者分别在血管造影术后三到六小时内完成焦虑和压力问卷,一个月后完成自我护理问卷。数据分析采用 SPSS 15 软件,显著性水平设定为 0.05:研究发现,大多数参与者为女性。研究前,两组在焦虑、压力和自理能力评分方面无明显差异。然而,在研究结束后,干预组的焦虑和压力平均得分明显下降(P 结论:干预组的焦虑和压力平均得分明显下降(P):根据本研究,AP 可有效影响冠状动脉造影患者的焦虑、压力水平和自理能力。它有助于减轻压力和焦虑,同时提高自我护理能力。教学软件使用方便,成本效益高,可向护士和医生推荐。
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引用次数: 0
New experience of implementing patient e-referral in the Iranian health system: a qualitative study. 伊朗医疗系统实施病人电子转诊的新经验:一项定性研究。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-08 DOI: 10.1186/s12911-024-02706-w
Ali Vafaee-Najar, Elaheh Hooshmand, Arefeh Pourtaleb, Hasan Ramezani Chenar

Background: Implementing an electronic system of service categorization and a referral system in healthcare is a strategic approach to improving overall health outcomes and optimizing resource use. This study aimed to investigate challenges experienced with the electronic patient referral system in Mashhad University of Medical Sciences (MUMS).

Methods: In this qualitative research, data were collected using semi-structured interviews. Participants included physicians, experts, and stakeholders working in the Family Physician Program and the referral system, selected through purposive sampling. The data were analyzed using a thematic analysis framework, in which a thematic framework was developed, and key themes were identified. Data analysis was performed using Atlas.ti8 software.

Results: According to the interviewees, the challenges of digitizing the referral system can be categorized into three main themes: structure, process, and outcomes. These themes include ten sub-themes, such as challenges related to Internet Infrastructure and the Sina System, Patients' Choice of Desired Specialists, Receiving Payment for Services, Appointment Scheduling, Interdepartmental Coordination, Recording Definitive Diagnosis Codes Before Referral, False Referrals, Dissatisfaction, Feedbacks, and Health Indicators.

Conclusion: To improve the e-referral in Iran's health system, several strategies can be implemented. These include sustainable resource allocation, designing consequence mechanisms within the referral system to motivate collaboration and improving appointment scheduling systems. Furthermore, addressing these challenges requires a collaborative approach involving healthcare providers, IT professionals, and patient representatives to ensure that the system is efficient, user-friendly, and effectively meets the needs of all parties involved. Not paying enough attention to these issues cause reform failure while solving them requires multi-dimensional, systematic and coordinated interventions with a deep understanding of the obstacles and challenges. Disregarding these factors may result in apathy over time, ultimately impacting both the quantity and, more importantly, the quality of services.

背景:在医疗保健领域实施服务分类电子系统和转诊系统是改善整体医疗效果和优化资源利用的战略方法。本研究旨在调查马什哈德医科大学(Mashhad University of Medical Sciences,MUMS)的电子患者转诊系统所面临的挑战:在这项定性研究中,采用半结构式访谈收集数据。参与者包括在家庭医生项目和转诊系统中工作的医生、专家和利益相关者,他们都是通过有目的抽样选出的。采用主题分析框架对数据进行分析,在此框架下建立了一个主题框架,并确定了关键主题。数据分析使用 Atlas.ti8 软件进行:受访者认为,转介系统数字化所面临的挑战可分为三大主题:结构、过程和结果。这些主题包括十个次主题,如与互联网基础设施和新浪系统相关的挑战、患者对所需专科医生的选择、收取服务费用、预约安排、部门间协调、转诊前记录明确诊断代码、虚假转诊、不满意、反馈和健康指标:为改善伊朗医疗系统的电子转诊情况,可实施多项战略。这些策略包括可持续的资源分配、在转诊系统中设计激励合作的后果机制以及改进预约安排系统。此外,应对这些挑战需要医疗服务提供者、IT 专业人员和患者代表的通力合作,以确保系统高效、用户友好并有效满足所有相关方的需求。对这些问题不够重视会导致改革失败,而要解决这些问题,则需要在深入了解障碍和挑战的基础上,采取多维度、系统化和协调一致的干预措施。忽视这些因素可能导致长期的冷漠,最终影响服务的数量,更重要的是影响服务的质量。
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引用次数: 0
Development and validation of an instrument to evaluate the perspective of using the electronic health record in a hospital setting. 开发并验证一种工具,用于评估在医院环境中使用电子病历的视角。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-08 DOI: 10.1186/s12911-024-02675-0
Radouane Rhayha, Abderrahman Alaoui Ismaili

Background: Evaluating healthcare information systems, such as the Electronic Health Records (EHR), is both challenging and essential, especially in resource-limited countries. This study aims to psychometrically develop and validate an instrument (questionnaire) to assess the factors influencing the successful adoption of the EHR system by healthcare professionals in Moroccan university hospitals.

Methods: The questionnaire validation process occurred in two main stages. Initially, data collected from a pilot sample of 164 participants underwent analysis using exploratory factor analysis (EFA) to evaluate the validity and reliability of the retained factor structure. Subsequently, the validity of the overall measurement model was confirmed using confirmatory factor analysis (CFA) in a sample of 368 healthcare professionals.

Results: The structure of the modified HOT-fit model, comprising seven constructs (System Quality, Information Quality, Information technology Service Quality, User Satisfaction, Organization, Environment, and Clinical Performance), was confirmed through confirmatory factor analysis. Absolute, incremental, and parsimonious fit indices all indicated an appropriate level of acceptability, affirming the robustness of the measurement model. Additionally, the instrument demonstrated adequate reliability and convergent validity, with composite reliability values ranging from 0.75 to 0.89 and average variance extracted (AVE) values ranging from 0.51 to 0.63. Furthermore, the square roots of AVE values exceeded the correlations between different pairs of constructs, and the heterotrait-monotrait ratio of correlations (HTMT) was below 0.85, confirming suitable discriminant validity.

Conclusions: The resulting instrument, due to its rigorous development and validation process, can serve as a reliable and valid tool for assessing the success of information technologies in similar contexts.

背景:对电子病历(EHR)等医疗信息系统进行评估既具有挑战性又十分必要,尤其是在资源有限的国家。本研究旨在从心理统计学角度开发和验证一种工具(调查问卷),以评估影响摩洛哥大学医院医护人员成功采用电子病历系统的因素:问卷验证过程分为两个主要阶段。首先,使用探索性因素分析法(EFA)对从 164 名参与者的试点样本中收集的数据进行分析,以评估保留因素结构的有效性和可靠性。随后,在 368 名医疗保健专业人员样本中使用确认性因子分析(CFA)确认了整体测量模型的有效性:结果:修改后的 HOT-fit 模型由七个构念(系统质量、信息质量、信息技术服务质量、用户满意度、组织、环境和临床绩效)组成,其结构通过确认性因子分析得到了证实。绝对拟合指数、增量拟合指数和准拟合指数均显示出适当的可接受性水平,从而肯定了测量模型的稳健性。此外,该工具还表现出足够的可靠性和收敛有效性,其综合可靠性值在 0.75 至 0.89 之间,平均方差提取(AVE)值在 0.51 至 0.63 之间。此外,AVE 值的平方根超过了不同构念对之间的相关性,异质-单质相关比(HTMT)低于 0.85,证实了适当的判别效度:结论:经过严格的开发和验证过程,该工具可作为一种可靠有效的工具,用于评估信息技术在类似情况下的成功与否。
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引用次数: 0
Equipping computational pathology systems with artifact processing pipelines: a showcase for computation and performance trade-offs. 为计算病理学系统配备人工制品处理管道:计算与性能权衡的展示。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-07 DOI: 10.1186/s12911-024-02676-z
Neel Kanwal, Farbod Khoraminia, Umay Kiraz, Andrés Mosquera-Zamudio, Carlos Monteagudo, Emiel A M Janssen, Tahlita C M Zuiverloon, Chunming Rong, Kjersti Engan
<p><strong>Background: </strong>Histopathology is a gold standard for cancer diagnosis. It involves extracting tissue specimens from suspicious areas to prepare a glass slide for a microscopic examination. However, histological tissue processing procedures result in the introduction of artifacts, which are ultimately transferred to the digitized version of glass slides, known as whole slide images (WSIs). Artifacts are diagnostically irrelevant areas and may result in wrong predictions from deep learning (DL) algorithms. Therefore, detecting and excluding artifacts in the computational pathology (CPATH) system is essential for reliable automated diagnosis.</p><p><strong>Methods: </strong>In this paper, we propose a mixture of experts (MoE) scheme for detecting five notable artifacts, including damaged tissue, blur, folded tissue, air bubbles, and histologically irrelevant blood from WSIs. First, we train independent binary DL models as experts to capture particular artifact morphology. Then, we ensemble their predictions using a fusion mechanism. We apply probabilistic thresholding over the final probability distribution to improve the sensitivity of the MoE. We developed four DL pipelines to evaluate computational and performance trade-offs. These include two MoEs and two multiclass models of state-of-the-art deep convolutional neural networks (DCNNs) and vision transformers (ViTs). These DL pipelines are quantitatively and qualitatively evaluated on external and out-of-distribution (OoD) data to assess generalizability and robustness for artifact detection application.</p><p><strong>Results: </strong>We extensively evaluated the proposed MoE and multiclass models. DCNNs-based MoE and ViTs-based MoE schemes outperformed simpler multiclass models and were tested on datasets from different hospitals and cancer types, where MoE using (MobileNet) DCNNs yielded the best results. The proposed MoE yields 86.15 % F1 and 97.93% sensitivity scores on unseen data, retaining less computational cost for inference than MoE using ViTs. This best performance of MoEs comes with relatively higher computational trade-offs than multiclass models. Furthermore, we apply post-processing to create an artifact segmentation mask, a potential artifact-free RoI map, a quality report, and an artifact-refined WSI for further computational analysis. During the qualitative evaluation, field experts assessed the predictive performance of MoEs over OoD WSIs. They rated artifact detection and artifact-free area preservation, where the highest agreement translated to a Cohen Kappa of 0.82, indicating substantial agreement for the overall diagnostic usability of the DCNN-based MoE scheme.</p><p><strong>Conclusions: </strong>The proposed artifact detection pipeline will not only ensure reliable CPATH predictions but may also provide quality control. In this work, the best-performing pipeline for artifact detection is MoE with DCNNs. Our detailed experiments show that there is always
背景:组织病理学是癌症诊断的黄金标准。它包括从可疑部位提取组织标本,准备玻璃载玻片进行显微镜检查。然而,组织学组织处理程序会产生伪影,这些伪影最终会转移到数字化的玻璃载玻片上,即所谓的全玻片图像(WSI)。伪影是与诊断无关的区域,可能导致深度学习(DL)算法预测错误。因此,在计算病理学(CPATH)系统中检测并排除伪影对于可靠的自动诊断至关重要:本文提出了一种专家混合(MoE)方案,用于从 WSIs 中检测五种明显的伪影,包括受损组织、模糊、折叠组织、气泡和组织学无关的血液。首先,我们训练独立的二元 DL 模型作为专家,以捕捉特定的伪影形态。然后,我们利用融合机制将它们的预测集合起来。我们对最终的概率分布进行概率阈值处理,以提高 MoE 的灵敏度。我们开发了四个 DL 管道来评估计算和性能的权衡。其中包括两个MoE以及最先进的深度卷积神经网络(DCNN)和视觉转换器(ViT)的两个多类模型。我们在外部数据和分布外(OoD)数据上对这些 DL 管道进行了定量和定性评估,以评估人工智能检测应用的通用性和鲁棒性:我们广泛评估了所提出的 MoE 和多类模型。基于 DCNNs 的 MoE 和基于 ViTs 的 MoE 方案优于简单的多类模型,并在来自不同医院和癌症类型的数据集上进行了测试,其中使用(MobileNet)DCNNs 的 MoE 取得了最佳结果。与使用 ViTs 的 MoE 相比,拟议的 MoE 在未见数据上的 F1 和灵敏度得分分别为 86.15% 和 97.93%,推理计算成本更低。与多类模型相比,MoE 的这一最佳性能需要更高的计算权衡。此外,我们还进行了后处理,以创建一个人工痕迹分割掩码、一个潜在的无人工痕迹 RoI 地图、一份质量报告和一个人工痕迹提纯的 WSI,用于进一步的计算分析。在定性评估中,现场专家评估了 MoE 相对于 OoD WSI 的预测性能。他们对工件检测和无工件区域保存进行了评分,其中最高的一致性转化为 0.82 的 Cohen Kappa,这表明基于 DCNN 的 MoE 方案的整体诊断可用性具有很高的一致性:结论:所提出的伪影检测管道不仅能确保可靠的 CPATH 预测,还能提供质量控制。在这项工作中,性能最佳的伪影检测管道是采用 DCNN 的 MoE。我们的详细实验表明,性能和计算复杂度之间总是存在权衡,没有一种直接的 DL 解决方案能同样适用于所有类型的数据和应用。代码和 HistoArtifacts 数据集可分别在 Github 和 Zenodo 上找到。
{"title":"Equipping computational pathology systems with artifact processing pipelines: a showcase for computation and performance trade-offs.","authors":"Neel Kanwal, Farbod Khoraminia, Umay Kiraz, Andrés Mosquera-Zamudio, Carlos Monteagudo, Emiel A M Janssen, Tahlita C M Zuiverloon, Chunming Rong, Kjersti Engan","doi":"10.1186/s12911-024-02676-z","DOIUrl":"https://doi.org/10.1186/s12911-024-02676-z","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;Histopathology is a gold standard for cancer diagnosis. It involves extracting tissue specimens from suspicious areas to prepare a glass slide for a microscopic examination. However, histological tissue processing procedures result in the introduction of artifacts, which are ultimately transferred to the digitized version of glass slides, known as whole slide images (WSIs). Artifacts are diagnostically irrelevant areas and may result in wrong predictions from deep learning (DL) algorithms. Therefore, detecting and excluding artifacts in the computational pathology (CPATH) system is essential for reliable automated diagnosis.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;In this paper, we propose a mixture of experts (MoE) scheme for detecting five notable artifacts, including damaged tissue, blur, folded tissue, air bubbles, and histologically irrelevant blood from WSIs. First, we train independent binary DL models as experts to capture particular artifact morphology. Then, we ensemble their predictions using a fusion mechanism. We apply probabilistic thresholding over the final probability distribution to improve the sensitivity of the MoE. We developed four DL pipelines to evaluate computational and performance trade-offs. These include two MoEs and two multiclass models of state-of-the-art deep convolutional neural networks (DCNNs) and vision transformers (ViTs). These DL pipelines are quantitatively and qualitatively evaluated on external and out-of-distribution (OoD) data to assess generalizability and robustness for artifact detection application.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;We extensively evaluated the proposed MoE and multiclass models. DCNNs-based MoE and ViTs-based MoE schemes outperformed simpler multiclass models and were tested on datasets from different hospitals and cancer types, where MoE using (MobileNet) DCNNs yielded the best results. The proposed MoE yields 86.15 % F1 and 97.93% sensitivity scores on unseen data, retaining less computational cost for inference than MoE using ViTs. This best performance of MoEs comes with relatively higher computational trade-offs than multiclass models. Furthermore, we apply post-processing to create an artifact segmentation mask, a potential artifact-free RoI map, a quality report, and an artifact-refined WSI for further computational analysis. During the qualitative evaluation, field experts assessed the predictive performance of MoEs over OoD WSIs. They rated artifact detection and artifact-free area preservation, where the highest agreement translated to a Cohen Kappa of 0.82, indicating substantial agreement for the overall diagnostic usability of the DCNN-based MoE scheme.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Conclusions: &lt;/strong&gt;The proposed artifact detection pipeline will not only ensure reliable CPATH predictions but may also provide quality control. In this work, the best-performing pipeline for artifact detection is MoE with DCNNs. Our detailed experiments show that there is always","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":"24 1","pages":"288"},"PeriodicalIF":3.3,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11457387/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142388239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Leverage machine learning to identify key measures in hospital operations management: a retrospective study to explore feasibility and performance of four common algorithms. 利用机器学习识别医院运营管理中的关键措施:一项探索四种常用算法可行性和性能的回顾性研究。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-04 DOI: 10.1186/s12911-024-02689-8
Wantao Zhang, Yan Zhu, Liqun Tong, Guo Wei, Huajun Zhang

Background: Measures in operations management are pivotal for monitoring and assessing various aspects of hospital performance. Existing literature highlights the importance of regularly updating key management measures to reflect changing trends and organizational goals. Advancements in machine learning (ML) have presented promising opportunities for enhancing the process of updating operations management measures. However, their specific application and performance remain relatively unexplored. We aimed to investigate the feasibility and effectiveness of using common ML techniques to identify and update key measures in hospital operations management.

Methods: Historical data on 43 measures on financial balance and quality of care under 4 categories were retrieved from the BI system of a regional health system in Central China. The dataset included 17 surgical and 15 non-surgical departments over 48 months. Four common ML techniques, linear models (LM), random forest (RF), partial least squares (PLS), and neural networks (NN), were used to identify the most important measures. Ordinary least square was employed to investigate the impact of the top 10 measures. A ground truth validation compared the ML-identified key measures against the humanly decided strategic measures from annual meeting minutes.

Results: For financial balancing, inpatient treatment revenue was an important measure in 3/4 years, followed by equipment depreciation costs. The measures identified using the same technique differed between years, though RF and PLS yielded relatively consistent results. For quality of care, none of the ML-identified measures repeated over the years. Those consistently important over four years differed almost entirely among four techniques. On ground truth validation, the 2016-2019 ML-identified measures were among the humanly identified measures, with the exception of equipment depreciation from the 2019 dataset. All the ML-identified measures for quality of care failed to coincide with the humanly decided measures.

Conclusions: Using ML to identify key hospital operational measures is viable but performance of ML techniques vary considerably. RF performs best among the four techniques in identifying key measures in financial balance. None of the ML techniques seem effective for identifying quality of care measures. ML is suggested as a decision support tool to remind and inspire decision-makers in certain aspects of hospital operations management.

背景:运营管理中的衡量标准对于监测和评估医院绩效的各个方面至关重要。现有文献强调了定期更新关键管理措施以反映不断变化的趋势和组织目标的重要性。机器学习(ML)的进步为加强运营管理措施的更新过程提供了大有可为的机会。然而,它们的具体应用和性能仍相对欠缺。方法:我们从华中某地区卫生系统的 BI 系统中获取了 4 个类别下 43 个财务平衡和医疗质量衡量指标的历史数据。数据集包括 17 个手术科室和 15 个非手术科室,历时 48 个月。研究采用了线性模型(LM)、随机森林(RF)、偏最小二乘法(PLS)和神经网络(NN)等四种常见的多模型技术来识别最重要的指标。采用普通最小二乘法来研究前 10 个测量指标的影响。一项基本真实验证将 ML 确定的关键措施与年度会议记录中人为决定的战略措施进行了比较:结果:对于财务平衡而言,住院治疗收入是 3/4 年中的重要衡量标准,其次是设备折旧费用。虽然 RF 和 PLS 得出的结果相对一致,但使用相同技术确定的衡量标准在不同年份之间存在差异。在医疗质量方面,ML 确定的衡量标准在不同年份都不相同。那些在四年中始终重要的措施在四种技术中几乎完全不同。在地面实况验证中,除了 2019 年数据集中的设备折旧外,2016-2019 年 ML 识别的衡量标准都属于人工识别的衡量标准。所有经 ML 识别的医疗质量衡量标准都与人工确定的衡量标准不一致:结论:使用 ML 识别关键的医院运营措施是可行的,但 ML 技术的性能差异很大。在四种技术中,射频技术在识别财务平衡关键指标方面表现最佳。在确定医疗质量衡量标准方面,没有一种 ML 技术是有效的。建议将 ML 作为一种决策支持工具,在医院运营管理的某些方面提醒和激励决策者。
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引用次数: 0
Machine learning-based prediction model for hypofibrinogenemia after tigecycline therapy. 基于机器学习的替加环素治疗后低纤维蛋白原血症预测模型
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-04 DOI: 10.1186/s12911-024-02694-x
Jianping Zhu, Rui Zhao, Zhenwei Yu, Liucheng Li, Jiayue Wei, Yan Guan

Background: In clinical practice, the incidence of hypofibrinogenemia (HF) after tigecycline (TGC) treatment significantly exceeds the probability claimed by drug manufacturers.

Objective: We aimed to identify the risk factors for TGC-associated HF and develop prediction and survival models for TGC-associated HF and the timing of TGC-associated HF.

Methods: This single-center retrospective cohort study included 222 patients who were prescribed TGC. First, we used binary logistic regression to screen the independent factors influencing TGC-associated HF, which were used as predictors to train the extreme gradient boosting (XGBoost) model. Receiver operating characteristic curve (ROC), calibration curve, decision curve analysis (DCA), and clinical impact curve analysis (CICA) were used to evaluate the performance of the model in the verification cohort. Subsequently, we conducted survival analysis using the random survival forest (RSF) algorithm. A consistency index (C-index) was used to evaluate the accuracy of the RSF model in the verification cohort.

Results: Binary logistic regression identified nine independent factors influencing TGC-associated HF, and the XGBoost model was constructed using these nine predictors. The ROC and calibration curves showed that the model had good discrimination (areas under the ROC curves (AUC) = 0.792 [95% confidence interval (CI), 0.668-0.915]) and calibration ability. In addition, DCA and CICA demonstrated good clinical practicability of this model. Notably, the RSF model showed good accuracy (C-index = 0.746 [95%CI, 0.652-0.820]) in the verification cohort. Stratifying patients treated with TGC based on the RSF model revealed a statistically significant difference in the mean survival time between the low- and high-risk groups.

Conclusions: The XGBoost model effectively predicts the risk of TGC-associated HF, whereas the RSF model has advantages in risk stratification. These two models have significant clinical practical value, with the potential to reduce the risk of TGC therapy.

背景:在临床实践中,替加环素(TGC)治疗后低纤维蛋白原血症(HF)的发生率大大超过了药品生产商声称的概率:我们旨在确定 TGC 相关高纤维蛋白血症的风险因素,并建立 TGC 相关高纤维蛋白血症的预测和生存模型,以及 TGC 相关高纤维蛋白血症的发生时间:这项单中心回顾性队列研究纳入了222名处方TGC的患者。首先,我们使用二元逻辑回归筛选出影响TGC相关性HF的独立因素,并将其作为预测因子来训练极端梯度提升(XGBoost)模型。在验证队列中,我们使用接收者操作特征曲线(ROC)、校准曲线、决策曲线分析(DCA)和临床影响曲线分析(CICA)来评估模型的性能。随后,我们使用随机生存森林(RSF)算法进行了生存分析。一致性指数(C-index)用于评估 RSF 模型在验证队列中的准确性:二元逻辑回归确定了影响 TGC 相关高频的九个独立因素,并利用这九个预测因子构建了 XGBoost 模型。ROC 和校准曲线显示,该模型具有良好的区分度(ROC 曲线下面积(AUC)= 0.792 [95% 置信区间(CI),0.668-0.915])和校准能力。此外,DCA 和 CICA 证明该模型具有良好的临床实用性。值得注意的是,RSF 模型在验证队列中显示出良好的准确性(C 指数 = 0.746 [95%CI, 0.652-0.820])。根据 RSF 模型对接受 TGC 治疗的患者进行分层后发现,低风险组和高风险组的平均生存时间在统计学上存在显著差异:结论:XGBoost 模型能有效预测 TGC 相关心房颤动的风险,而 RSF 模型在风险分层方面具有优势。这两种模型具有重要的临床实用价值,有望降低TGC治疗的风险。
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引用次数: 0
Development of brain tumor radiogenomic classification using GAN-based augmentation of MRI slices in the newly released gazi brains dataset. 在新发布的 gazi brains 数据集中使用基于 GAN 的磁共振成像切片增强技术开发脑肿瘤放射基因组分类。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-04 DOI: 10.1186/s12911-024-02699-6
M M Enes Yurtsever, Yilmaz Atay, Bilgehan Arslan, Seref Sagiroglu

Significant progress has been made recently with the contribution of technological advances in studies on brain cancer. Regarding this, identifying and correctly classifying tumors is a crucial task in the field of medical imaging. The disease-related tumor classification problem, on which deep learning technologies have also become a focus, is very important in the diagnosis and treatment of the disease. The use of deep learning models has shown promising results in recent years. However, the sparsity of ground truth data in medical imaging or inconsistent data sources poses a significant challenge for training these models. The utilization of StyleGANv2-ADA is proposed in this paper for augmenting brain MRI slices to enhance the performance of deep learning models. Specifically, augmentation is applied solely to the training data to prevent any potential leakage. The StyleGanv2-ADA model is trained with the Gazi Brains 2020, BRaTS 2021, and Br35h datasets using the researchers' default settings. The effectiveness of the proposed method is demonstrated on datasets for brain tumor classification, resulting in a notable improvement in the overall accuracy of the model for brain tumor classification on all the Gazi Brains 2020, BraTS 2021, and Br35h datasets. Importantly, the utilization of StyleGANv2-ADA on the Gazi Brains 2020 Dataset represents a novel experiment in the literature. The results show that the augmentation with StyleGAN can help overcome the challenges of working with medical data and the sparsity of ground truth data. Data augmentation employing the StyleGANv2-ADA GAN model yielded the highest overall accuracy for brain tumor classification on the BraTS 2021 and Gazi Brains 2020 datasets, together with the BR35H dataset, achieving 75.18%, 99.36%, and 98.99% on the EfficientNetV2S models, respectively. This study emphasizes the potency of GANs for augmenting medical imaging datasets, particularly in brain tumor classification, showcasing a notable increase in overall accuracy through the integration of synthetic GAN data on the used datasets.

最近,脑癌研究取得了重大进展,技术进步功不可没。在这方面,识别肿瘤并对其进行正确分类是医学成像领域的一项重要任务。与疾病相关的肿瘤分类问题在疾病的诊断和治疗中非常重要,而深度学习技术也已成为这一问题的焦点。近年来,深度学习模型的应用取得了可喜的成果。然而,医学影像中地面实况数据的稀缺性或数据源的不一致性给这些模型的训练带来了巨大挑战。本文提出利用 StyleGANv2-ADA 来增强脑部 MRI 切片,从而提高深度学习模型的性能。具体来说,增强仅应用于训练数据,以防止任何潜在的泄漏。研究人员使用 Gazi Brains 2020、BRaTS 2021 和 Br35h 数据集对 StyleGanv2-ADA 模型进行了默认设置训练。研究人员在脑肿瘤分类数据集上展示了所提方法的有效性,结果表明,该模型在所有 Gazi Brains 2020、BraTS 2021 和 Br35h 数据集上进行脑肿瘤分类的整体准确率都有显著提高。重要的是,在 Gazi Brains 2020 数据集上使用 StyleGANv2-ADA 是文献中的一项新实验。结果表明,使用 StyleGAN 进行扩增有助于克服处理医疗数据和地面实况数据稀少的挑战。在 BraTS 2021 和 Gazi Brains 2020 数据集以及 BR35H 数据集上,使用 StyleGANv2-ADA GAN 模型进行数据增强后,脑肿瘤分类的总体准确率最高,在 EfficientNetV2S 模型上分别达到 75.18%、99.36% 和 98.99%。这项研究强调了 GAN 在增强医学影像数据集方面的潜力,尤其是在脑肿瘤分类方面,通过在所用数据集上集成合成 GAN 数据,显著提高了总体准确率。
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引用次数: 0
The power of deep learning in simplifying feature selection for hepatocellular carcinoma: a review. 深度学习在简化肝细胞癌特征选择方面的威力:综述。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-04 DOI: 10.1186/s12911-024-02682-1
Ghada Mostafa, Hamdi Mahmoud, Tarek Abd El-Hafeez, Mohamed E ElAraby

Background: Hepatocellular Carcinoma (HCC) is a highly aggressive, prevalent, and deadly type of liver cancer. With the advent of deep learning techniques, significant advancements have been made in simplifying and optimizing the feature selection process.

Objective: Our scoping review presents an overview of the various deep learning models and algorithms utilized to address feature selection for HCC. The paper highlights the strengths and limitations of each approach, along with their potential applications in clinical practice. Additionally, it discusses the benefits of using deep learning to identify relevant features and their impact on the accuracy and efficiency of diagnosis, prognosis, and treatment of HCC.

Design: The review encompasses a comprehensive analysis of the research conducted in the past few years, focusing on the methodologies, datasets, and evaluation metrics adopted by different studies. The paper aims to identify the key trends and advancements in the field, shedding light on the promising areas for future research and development.

Results: The findings of this review indicate that deep learning techniques have shown promising results in simplifying feature selection for HCC. By leveraging large-scale datasets and advanced neural network architectures, these methods have demonstrated improved accuracy and robustness in identifying predictive features.

Conclusions: We analyze published studies to reveal the state-of-the-art HCC prediction and showcase how deep learning can boost accuracy and decrease false positives. But we also acknowledge the challenges that remain in translating this potential into clinical reality.

背景:肝细胞癌(HCC肝细胞癌(HCC)是一种侵袭性强、发病率高且致命的肝癌。随着深度学习技术的出现,在简化和优化特征选择过程方面取得了重大进展:我们的范围综述概述了用于解决 HCC 特征选择问题的各种深度学习模型和算法。本文强调了每种方法的优势和局限性,以及它们在临床实践中的潜在应用。此外,论文还讨论了使用深度学习识别相关特征的好处及其对 HCC 诊断、预后和治疗的准确性和效率的影响:本综述全面分析了过去几年开展的研究,重点关注不同研究采用的方法、数据集和评估指标。本文旨在确定该领域的主要趋势和进展,揭示未来研究和发展的前景:本综述的研究结果表明,深度学习技术在简化 HCC 特征选择方面取得了可喜的成果。通过利用大规模数据集和先进的神经网络架构,这些方法在识别预测特征方面表现出更高的准确性和鲁棒性:我们分析了已发表的研究,揭示了最先进的 HCC 预测方法,并展示了深度学习如何提高准确性并减少误报。但我们也承认,要将这种潜力转化为临床现实,仍然存在挑战。
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引用次数: 0
Validation of large language models for detecting pathologic complete response in breast cancer using population-based pathology reports. 利用基于人群的病理报告验证检测乳腺癌病理完全反应的大型语言模型。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-03 DOI: 10.1186/s12911-024-02677-y
Ken Cheligeer, Guosong Wu, Alison Laws, May Lynn Quan, Andrea Li, Anne-Marie Brisson, Jason Xie, Yuan Xu

Aims: The primary goal of this study is to evaluate the capabilities of Large Language Models (LLMs) in understanding and processing complex medical documentation. We chose to focus on the identification of pathologic complete response (pCR) in narrative pathology reports. This approach aims to contribute to the advancement of comprehensive reporting, health research, and public health surveillance, thereby enhancing patient care and breast cancer management strategies.

Methods: The study utilized two analytical pipelines, developed with open-source LLMs within the healthcare system's computing environment. First, we extracted embeddings from pathology reports using 15 different transformer-based models and then employed logistic regression on these embeddings to classify the presence or absence of pCR. Secondly, we fine-tuned the Generative Pre-trained Transformer-2 (GPT-2) model by attaching a simple feed-forward neural network (FFNN) layer to improve the detection performance of pCR from pathology reports.

Results: In a cohort of 351 female breast cancer patients who underwent neoadjuvant chemotherapy (NAC) and subsequent surgery between 2010 and 2017 in Calgary, the optimized method displayed a sensitivity of 95.3% (95%CI: 84.0-100.0%), a positive predictive value of 90.9% (95%CI: 76.5-100.0%), and an F1 score of 93.0% (95%CI: 83.7-100.0%). The results, achieved through diverse LLM integration, surpassed traditional machine learning models, underscoring the potential of LLMs in clinical pathology information extraction.

Conclusions: The study successfully demonstrates the efficacy of LLMs in interpreting and processing digital pathology data, particularly for determining pCR in breast cancer patients post-NAC. The superior performance of LLM-based pipelines over traditional models highlights their significant potential in extracting and analyzing key clinical data from narrative reports. While promising, these findings highlight the need for future external validation to confirm the reliability and broader applicability of these methods.

目的:本研究的主要目的是评估大型语言模型(LLM)在理解和处理复杂医疗文档方面的能力。我们选择将重点放在病理报告中病理完全反应 (pCR) 的识别上。这种方法旨在促进综合报告、健康研究和公共卫生监测的发展,从而加强患者护理和乳腺癌管理策略:该研究利用了两个分析管道,它们是在医疗系统的计算环境中使用开源 LLMs 开发的。首先,我们使用 15 种不同的基于转换器的模型从病理报告中提取嵌入,然后在这些嵌入上使用逻辑回归对是否存在 pCR 进行分类。其次,我们通过附加一个简单的前馈神经网络(FFNN)层对生成预训练变换器-2(GPT-2)模型进行了微调,以提高病理报告中 pCR 的检测性能:在卡尔加里2010年至2017年间接受新辅助化疗(NAC)和后续手术的351名女性乳腺癌患者队列中,优化方法的灵敏度为95.3%(95%CI:84.0-100.0%),阳性预测值为90.9%(95%CI:76.5-100.0%),F1评分为93.0%(95%CI:83.7-100.0%)。通过多种 LLM 集成取得的结果超越了传统的机器学习模型,彰显了 LLM 在临床病理信息提取方面的潜力:该研究成功证明了 LLM 在解释和处理数字病理数据方面的功效,尤其是在确定 NAC 后乳腺癌患者的 pCR 方面。与传统模型相比,基于 LLM 的管道具有更优越的性能,这凸显了它们在从叙述性报告中提取和分析关键临床数据方面的巨大潜力。虽然这些研究结果前景广阔,但仍需在未来进行外部验证,以确认这些方法的可靠性和更广泛的适用性。
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引用次数: 0
Enhancing visual seismocardiography in noisy environments with adaptive bidirectional filtering for Cardiac Health Monitoring. 利用自适应双向滤波增强嘈杂环境中的可视化地震心动图,用于心脏健康监测。
IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-10-01 DOI: 10.1186/s12911-024-02690-1
Geetha N, C Rohith Bhat, Mahesh Tr, Temesgen Engida Yimer

Background: Wearable sensors have revolutionized cardiac health monitoring, with Seismocardiography (SCG) at the forefront due to its non-invasive nature. However, the substantial motion artefacts have hindered the translation of SCG-based medical applications, primarily induced by walking. In contrast, our innovative technique, Adaptive Bidirectional Filtering (ABF), surpasses these challenges by refining SCG signals more effectively than any motion-induced noise. ABF leverages a noise-cancellation algorithm, operating on the benefits of the Redundant Multi-Scale Wavelet Decomposition (RMWD) and the bidirectional filtering framework, to achieve optimal signal quality.

Methodology: The ABF technique is a two-stage process that diminishes the artefacts emanating from motion. The first step by RMWD is the identification of the heart-associated signals and the isolating samples with those related frequencies. Subsequently, the adaptive bidirectional filter operates in two dimensions: it uses Time-Frequency masking that eliminates temporal noise while engaging in non-negative matrix Decomposition to ensure spatial correlation and dorsoventral vibration reduction jointly. The main component that is altered from the other filters is the recursive structure that changes to the motion-adapted filter, which uses vertical axis accelerometer data to differentiate better between accurate SCG signals and motion artefacts.

Outcome: Our empirical tests demonstrate exceptional signal improvement with the application of our ABF approach. The accuracy in heart rate estimation reached an impressive r-squared value of 0.95 at - 20 dB SNR, significantly outperforming the baseline value, which ranged from 0.1 to 0.85. The effectiveness of the motion-artifact-reduction methodology is also notable at an SNR of - 22 dB. Consequently, ECG inputs are not required. This method can be seamlessly integrated into noisy environments, enhancing ECG filtering, automatic beat detection, and rhythm interpretation processes, even in highly variable conditions. The ABF method effectively filters out up to 97% of motion-related noise components within the SCG signal from implantable devices. This advancement is poised to become an integral part of routine patient monitoring.

背景:可穿戴传感器给心脏健康监测带来了革命性的变化,其中地震心动图(SCG)因其无创性而处于领先地位。然而,大量的运动伪影阻碍了基于 SCG 的医疗应用的转化,这些运动伪影主要是由行走引起的。与此相反,我们的创新技术--自适应双向滤波(ABF)--超越了这些挑战,比任何运动引起的噪音都能更有效地细化 SCG 信号。ABF 利用冗余多尺度小波分解(RMWD)和双向滤波框架的优势,采用噪音消除算法,以达到最佳信号质量:ABF 技术分为两个阶段,可减少运动产生的伪影。RMWD 的第一步是识别与心脏相关的信号,并分离出与这些相关频率的样本。随后,自适应双向滤波器从两个维度进行操作:使用时间-频率掩蔽消除时间噪声,同时进行非负矩阵分解以确保空间相关性,并共同减少背腹振动。与其他滤波器不同的主要部分是递归结构,它改变为运动适应滤波器,利用垂直轴加速度计数据更好地区分准确的 SCG 信号和运动伪影:我们的实证测试表明,应用 ABF 方法后,信号得到了显著改善。在 - 20 dB SNR 条件下,心率估计的准确性达到了令人印象深刻的 0.95 r 平方值,明显优于 0.1 至 0.85 之间的基线值。在信噪比为 - 22 dB 时,运动伪影减少方法的效果也很明显。因此,不需要心电图输入。这种方法可以无缝集成到嘈杂环境中,增强心电图滤波、自动节拍检测和心律解读过程,即使在高度多变的条件下也是如此。ABF 方法可有效滤除植入式设备 SCG 信号中高达 97% 的运动相关噪声成分。这一进步有望成为常规病人监护不可或缺的一部分。
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引用次数: 0
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BMC Medical Informatics and Decision Making
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