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Water soaking improves pizza bake properties of fat-free mozzarella cheese shreds 水浸泡改善无脂马苏里拉奶酪丝的披萨烘烤性能。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2025-11-21 DOI: 10.3168/jdsc.2025-0879
Suresh Sutariya , Prafulla Salunke
Fat-free mozzarella is valued for its low-calorie, low-fat nutrition, but suffers from poor melting, excessive browning, and rubbery texture when baked, limiting its appeal. This study builds on prior findings that soaking fat-free mozzarella shreds in water improves pizza baking performance. The research evaluates the effects of soaking on frozen-thawed shreds and on leftover pizza after refrigeration and microwave reheating, using rheometer-based analysis. Results show that soaking lowers the melting temperature and enhances flowable texture, with improvements persisting after freeze-thaw cycles and reheating. Hydrating shreds thus consistently improves performance of fat-free mozzarella pizza.
无脂马苏里拉奶酪因其低热量、低脂肪的营养价值而受到重视,但在烘烤时,它的融化性差、褐变过度、质地像橡胶一样,限制了它的吸引力。这项研究建立在先前的研究结果的基础上,即将脱脂马苏里拉奶酪丝浸泡在水中可以提高披萨的烘焙性能。本研究采用基于流变仪的分析方法,评估了浸泡对冻融后的碎片以及冷藏和微波再加热后的剩余披萨的影响。结果表明,浸泡降低了熔点温度,增强了流动织构,冻融循环和再加热后,这种改善仍在继续。因此,保湿丝可以持续提高脱脂马苏里拉披萨的性能。
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引用次数: 0
Identifying data anomalies in milk component measurements from partial-day milking records 从半日挤奶记录中识别牛奶成分测量数据异常。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2025-12-13 DOI: 10.3168/jdsc.2025-0825
Xiao-Lin Wu , Malia J. Caputo , Chip Donatone , Asha M. Miles , Baldwin Ransom L. VI , Steven Sievert , Jay Mattison , John B. Cole , Javier Burchard , João Dürr
High-quality milk and milk component data are crucial for accurate genetic evaluations and effective herd management. However, data recording errors can compromise the validity of downstream decisions. In a recent study, we proposed using intraclass correlation coefficients as a herd-level metric to assess the consistency of milk components from single milkings, thereby effectively identifying farms with potential data quality concerns. A key challenge, however, is whether potentially erroneous records can be detected at the cow-day level. In this study, we introduce a novel metric—individual-level intraclass correlations—to assess data consistency at the cow-day level and evaluate its performance against 3 commonly used anomaly-detection methods. We further introduce a 2-step approach to estimate percentile thresholds for flagging outliers. The results demonstrate the superior performance of this new metric over the conventional univariate and multivariate methods in identifying anomalies in correlated partial daily milk component data. In addition, the negative impact of data shuffling was examined. Together, these methods provide robust and practical tools for detecting suspect milk component records at the individual cow-day level.
高质量的牛奶和牛奶成分数据对于准确的遗传评估和有效的牛群管理至关重要。然而,数据记录错误会损害下游决策的有效性。在最近的一项研究中,我们建议使用类内相关系数作为畜群水平的度量来评估单次挤奶的牛奶成分的一致性,从而有效地识别存在潜在数据质量问题的农场。然而,一个关键的挑战是,能否在一天的水平上发现潜在的错误记录。在这项研究中,我们引入了一种新的度量——个体水平的类内相关性——来评估奶牛日水平上的数据一致性,并评估其与3种常用异常检测方法的表现。我们进一步介绍了一种两步方法来估计标记异常值的百分位数阈值。结果表明,在识别相关部分每日牛奶成分数据的异常方面,该新指标优于传统的单变量和多变量方法。此外,研究了数据变换的负面影响。总之,这些方法提供了强大的和实用的工具,以检测可疑的牛奶成分记录在个别奶牛日水平。
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引用次数: 0
Development of an Internet of Things–based real-time greenhouse gas and weather monitoring system for precision dairy farming 开发基于物联网的奶牛精准养殖温室气体和天气实时监测系统。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2025-12-01 DOI: 10.3168/jdsc.2025-0862
Keshawa Dadallage , Marina Madureira Ferreira , Alejandra Zapata-Salazar , Diego A. Ceballos , Lav R. Khot , Francisco A. Leal Yepes
The environmental footprint of dairy production is one of the most pressing challenges faced by the industry globally. Our study aimed to develop and validate a cost-effective sensing solution for real-time monitoring of dairy farms' GHG emissions and microclimatic conditions. Each of the integrated sensing nodes was equipped with carbon dioxide (CO2), methane (CH4), and ammonia (NH3) gas sensors, along with an all-in-one weather sensor. Sensing nodes were validated against gold-standard measurements using open-circuit respiration chambers with individual cows under controlled conditions. The CH4 emissions (133.0 ± 22.5 ppm, mean ± SD) showed an overall correlation (r = 0.46) with the gold-standard respiration chamber (166.0 ± 32.8 ppm) across all 3 d. However, the correlation changed over time, with a strong correlation on d 1 (r = 0.62), a moderate correlation on d 2 (r = 0.35), and a weak correlation on d 3 (r = 0.11). In contrast, sensor node quantified CO2 emissions (905 ± 779 ppm) showed a weaker correlation (r = 0.019, 2,461 ± 346 ppm), indicating the need for further improvements to the sensing node. A wireless network of calibrated sensing nodes was deployed in 3 different locations within a dairy farm: dry cow pen (DCP), feed bunk (FB), and freestall beds (FSB) at a research dairy farm. The CH4 emissions were greater in the DCP (12.5 ± 6.65 ppm) compared with FB (2.80 ± 0.61 ppm) and FSB (2.34 ± 0.62 ppm). The CO2 emissions at the FB were greater (1,498 ± 1,020 ppm) compared with the DCP (534 ± 222 ppm) and FSB (724 ± 517 ppm). The NH3 emissions were highest in the FSB (4.24 ± 0.91 ppm) compared with DCP (2.93 ± 1.35 ppm) and FB (1.10 ± 0.44 ppm). The differences in GHG emissions across the different areas of the dairy farm may be influenced by ambient temperature, humidity, housing conditions, and manure management practices. Our sensing nodes may provide a low-cost, scalable sensing network that can offer a practical solution for continuous GHG monitoring.
乳制品生产的环境足迹是全球乳制品行业面临的最紧迫挑战之一。我们的研究旨在开发和验证一种具有成本效益的传感解决方案,用于实时监测奶牛场的温室气体排放和小气候条件。每个集成传感节点都配备了二氧化碳(CO2)、甲烷(CH4)和氨(NH3)气体传感器,以及一体化天气传感器。感应节点在受控条件下使用开路呼吸室对单个奶牛进行金标准测量验证。CH4排放量(133.0±22.5 ppm, mean±SD)与金标准呼吸室(166.0±32.8 ppm)在所有3天内均显示出总体相关性(r = 0.46)。然而,相关性随时间而变化,第1天相关性强(r = 0.62),第2天相关性中等(r = 0.35),第3天相关性弱(r = 0.11)。相比之下,传感器节点量化CO2排放量(905±779 ppm)的相关性较弱(r = 0.019, 2,461±346 ppm),表明传感器节点需要进一步改进。一个由校准传感节点组成的无线网络部署在一个奶牛场的3个不同位置:一个研究奶牛场的干牛栏(DCP)、饲料铺(FB)和独立式床(FSB)。DCP的CH4排放量(12.5±6.65 ppm)高于FB(2.80±0.61 ppm)和FSB(2.34±0.62 ppm)。与DCP(534±222 ppm)和FSB(724±517 ppm)相比,FB的CO2排放量(1498±1020 ppm)更高。FSB的NH3排放量最高(4.24±0.91 ppm), DCP为(2.93±1.35 ppm), FB为(1.10±0.44 ppm)。奶牛场不同区域的温室气体排放差异可能受到环境温度、湿度、住房条件和粪肥管理做法的影响。我们的传感节点可以提供低成本,可扩展的传感网络,可以为连续的温室气体监测提供实用的解决方案。
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引用次数: 0
Differential energy partitioning occurs in response to high- and low-energy diets in Holstein cows during late lactation 泌乳后期荷斯坦奶牛对高能量日粮和低能量日粮的能量分配存在差异。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2026-01-16 DOI: 10.3168/jdsc.2025-0891
Thiago O. Cunha , Tanya L. France , Sebastian I. Arriola Apelo , Kenneth.F. Kalscheur , Elizabeth A. French , Mateus Z. Toledo , Milo C. Wiltbank , Laura L. Hernandez
This study evaluated the impact of high-energy (HE) or low-energy (LE) diets during late lactation and the responsiveness of body condition changes to diet during the dietary treatment period. Sixty-six multiparous Holstein cows were blocked by parity and expected date of parturition and randomly assigned to HE (1.74 Mcal/kg DM) or LE (1.50 Mcal/kg DM) diets at 150 d of gestation to achieve high or average BCS by dry-off (233 d of gestation). Surprisingly, not all cows within dietary treatment groups were responsive to the diet based on BCS at dry-off. To determine the underlying physiology responsible for this observation, we classified cows as responsive (R) or nonresponsive to diet (NR) within each dietary treatment: HE (HE-R, >0.25 increase in BCS [28/35]; HE-NR, ≤0.25 BCS [7/35]) or LE (LE-R ≤0.25 increase in BCS [27/31]; LE-NR >0.25 BCS increase [4/31]). Feed intake did not differ within the HE-R and HE-NR subgroups or between the LE-R and LE-NR subgroups. During the dietary treatment period, cumulative ECM was greater in HE-NR than HE-R cows (3,304 vs. 2,236 ± 151 kg). In contrast, LE-NR produced less ECM than LE-R cows (1,622 ± 229 vs. 2,068 ± 77 kg) during the dietary treatment period. Circulating insulin concentrations were similar among subgroups at study enrollment (9.2 ± 1.1 mU/mL); however, dry-off insulin concentrations differed among subgroups (HE-R 17 ± 3.0; HE-NR 5.4 ± 2.0 mU/mL; LE-R 10.2 ± 2.0; LE-NR 23.6 ± 4.0 mU/mL). One week before parturition, circulating insulin concentrations converged and were no longer different among subgroups, averaging 12.5 ± 2 mU/mL. Our data suggest that circulating insulin concentration is involved in regulating the response to dietary treatment during late lactation.
本研究评估了高能量(HE)或低能(LE)饲粮对泌乳后期的影响,以及饲粮处理期间机体状况变化对饲粮的反应性。根据胎次和预产期,选择66头荷斯坦奶牛,在妊娠150 d时随机饲喂高(1.74 Mcal/kg DM)或低(1.50 Mcal/kg DM)饲粮,以期在妊娠233 d时达到高或平均BCS。令人惊讶的是,并非所有饲粮处理组的奶牛都对基于BCS的日粮有反应。为了确定导致这一现象的潜在生理机制,我们将奶牛对饲粮(NR)的反应性(R)和非反应性(R)分为:HE (HE-R, >增加0.25 BCS [28/35]; HE-NR,≤0.25 BCS[7/35])和LE (LE-R≤0.25 BCS [27/31]; LE-NR >增加0.25 BCS[4/31])。HE-R亚组与HE-NR亚组之间、LE-R亚组与LE-NR亚组之间采食量无显著差异。在饲粮处理期间,HE-NR奶牛的累积ECM大于HE-R奶牛(3,304 vs. 2,236±151 kg)。相比之下,在饲粮处理期间,LE-NR奶牛的ECM产生量低于LE-R奶牛(1,622±229 vs. 2,068±77 kg)。在研究入组时,亚组间循环胰岛素浓度相似(9.2±1.1 mU/mL);然而,各亚组间干干胰岛素浓度差异较大(HE-R 17±3.0,HE-NR 5.4±2.0 mU/mL, LE-R 10.2±2.0,LE-NR 23.6±4.0 mU/mL)。产前1周循环胰岛素浓度趋同,亚组间无差异,平均12.5±2 mU/mL。我们的数据表明,循环胰岛素浓度参与调节哺乳后期对饮食治疗的反应。
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引用次数: 0
Exploratory analysis of associations between postpartum body condition changes measured by an automated 3-dimensional camera and reproductive outcomes measured by in-line milk progesterone analysis 通过自动三维相机测量产后身体状况变化与在线乳孕酮分析测量生殖结果之间的相关性的探索性分析。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2026-01-16 DOI: 10.3168/jdsc.2025-0773
Alessandro Frizza , Erminio Trevisi , Luca Cattaneo
<div><div>Our objective was to evaluate the associations of postpartum BCS changes, as predicted by automatic monitoring using 3-dimensional (3D) camera technology after calving, with milk yield and reproductive outcomes assessed both from in-line milk progesterone analysis and conventional methods in Holstein dairy cows in a retrospective observational study. Cows calving in a commercial farm during a whole year (n = 123; 53 primiparous and 70 multiparous) were automatically evaluated for BCS with a 3D camera (DeLaval Body Condition Scoring system) daily on a 5-point scale up to 120 DIM and retrospectively classified into tertiles based on BCS change from calving to 30 DIM. The resulting groups had high (HI), intermediate (IN), and low (LO) BCS change. Milk yield and milking frequency were collected daily from the automatic milking system (VMS V310, DeLaval), which also automatically evaluated milk progesterone concentration every 2 to 3 d on average. These data were used to characterize luteal activity, with progesterone concentrations peaking during luteal phases and reaching a nadir around estrus events, thus allowing identification of the resumption of cyclicity. Pregnancy outcomes were evaluated up to 200 DIM with logistic regressions and time-to-event data with Cox's proportional hazard models. Continuous data were analyzed with ANOVA, with repeated measures mixed models when appropriate. The models included the effects of BCS tertile and parity. Body condition score loss averaged −0.47, −0.30, and −0.09 for HI, IN, and LO, respectively, ranging from −0.78 to −0.36 in HI, from −0.35 to −0.25 in IN, and from −0.24 to 0.41 in LO. Cows with minimal BCS loss (LO) were thinner (BCS = 3.23 ± 0.29) at calving than cows with greater BCS loss (HI and IN, BCS = 3.38 ± 0.25 and 3.37 ± 0.23, respectively). The BCS nadir was lower in HI compared with IN and LO, although the time to the nadir did not differ. The HI cows tended to have later commencement of luteal activity (i.e., DIM of the first of at least 2 consecutive samples with milk progesterone ≥5 ng/mL; +8 d vs. IN and LO), calculated based on progesterone profiles, but a similar percentage of cows (∼95% overall) resumed ovarian cyclicity before the end of voluntary waiting period (75 DIM). The proportion of cows pregnant at the first artificial insemination (AI) did not differ, but LO cows tended to have increased likelihood of pregnancy at the second AI compared with IN. The cumulative proportion of pregnant cows at the first and second AI tended to be greater in LO compared with HI and IN, and the proportion of pregnant cows up to 200 DIM was greater in LO. Compared with LO, the HI and IN cows had reduced hazard of pregnancy up to 200 DIM. Milk yield was 4 and 3 kg/d lower in LO compared with HI and IN. Automated BCS and progesterone monitoring showed that greater BCS loss in the first 28 DIM was associated with delayed cyclicity and reduced reproductive performance, whereas minimal loss was
在一项回顾性观察研究中,我们的目的是评估产后BCS变化与荷斯坦奶牛产奶量和生殖结局的关系,该变化是通过产犊后使用三维(3D)相机技术自动监测预测的,同时通过在线乳黄体酮分析和传统方法评估荷斯坦奶牛的产奶量和生殖结局。采用3D摄像机(DeLaval Body Condition Scoring system)每天对某商业农场产犊的奶牛(123头,53头初产奶牛和70头多产奶牛)进行BCS评分(5分制,评分范围为120 DIM),并根据产犊至30 DIM的BCS变化情况将其回顾性分为高(HI)、中(in)和低(LO) 3组。通过DeLaval自动挤奶系统(VMS V310)每天采集产奶量和挤奶频率,并平均每2 ~ 3 d自动评估一次乳中黄体酮浓度。这些数据被用来描述黄体活性,黄体激素浓度在黄体期达到峰值,在发情事件前后达到最低点,从而可以确定周期的恢复。采用Cox比例风险模型,采用logistic回归和时间-事件数据对200 DIM以内的妊娠结局进行评估。对连续数据进行方差分析,适当时采用重复测量混合模型。模型包括了BCS胎率和平价的影响。HI、IN和LO的体况评分损失平均分别为-0.47、-0.30和-0.09,HI为-0.78至-0.36,IN为-0.35至-0.25,LO为-0.24至0.41。产犊时,BCS损失最小(LO)的奶牛比BCS损失较大(HI和IN, BCS分别为3.38±0.25和3.37±0.23)的奶牛更瘦(BCS = 3.23±0.29)。与in和LO相比,BCS最低点在HI中较低,尽管到达最低点的时间没有差异。根据黄体酮谱计算,HI奶牛的黄体活性倾向于较晚开始(即,至少连续2个乳黄体酮≥5 ng/mL的样品中的第一个样品的DIM;与IN和LO相比+8 d),但在自愿等待期(75 DIM)结束之前恢复卵巢周期的奶牛比例相似(总体约95%)。在第一次人工授精(AI)时,奶牛的怀孕比例没有差异,但与IN相比,LO奶牛在第二次人工授精时的怀孕可能性往往更高。第1期和第2期妊娠奶牛在LO期的累计比例高于HI期和in期,且在LO期的累计比例高于200 DIM期。与低剂量组相比,高剂量组和低剂量组奶牛妊娠风险降低至200 DIM。低剂量组奶牛产奶量比高剂量组和低剂量组分别降低4和3 kg/d。自动BCS和黄体酮监测显示,前28个DIM中BCS损失较大与周期延迟和生殖性能降低有关,而最小损失与生殖成功率较高但产量较低有关。
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引用次数: 0
Meta-analysis of supplemental methionine effects on plasma amino acid concentrations in dairy cows 添加蛋氨酸对奶牛血浆氨基酸浓度影响的meta分析。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2025-10-10 DOI: 10.3168/jdsc.2025-0804
G.I. Zanton
Increasing metabolizable Met (mMet) through feeding supplemental rumen-protected Met to dairy cows is a common component of balancing rations for Met. Changes in plasma Met (pMet) brought about by this practice may affect the metabolism of other AA, resulting in changes in the concentration of other plasma AA (pAA). The objective of this meta-analysis was to evaluate the changes in pAA when lactating dairy cows were provided supplemental mMet. Literature studies were identified that fed cows a control diet and the control diet supplemented with Met as either rumen-protected Met or through infusion to increase pMet. There were 41 studies feeding 60 control and 78 Met treatments that met the selection criteria and entered into the final analysis. Responses entering the meta-analysis were calculated as Met-supplemented cow pAA − control cow pAA and analyzed as weighted mean differences or standardized weighted mean differences where the weighting term was the inverse variance and robust variance estimation was conducted to account for the hierarchical structure of the data. Regression was also conducted where pAA were regressed against pMet weighted by the inverse variance and including the random effect of study and experiment-within-study. Mean pMet in control cows was 19.9 µM, which increased with supplementation by 11.3 µM. Sulfur-containing pAA Cys and homocysteine as well as Lys were increased with increasing pMet whereas Gln, Glu, His, Ile, Leu, Tyr, and Val decreased with increasing pMet. The pAA Arg, Gly, Orn, Ser, Tau, and Trp responded curvilinearly to pMet with the predicted response in Arg, Orn, Tau, and Trp reaching a peak and Gly and Ser a nadir at intermediate concentrations of pMet. Milk protein yield increased in association with greater pMet, but responses to supplemental Met appeared to be limited by the reduction of other pAA, as higher responses to pMet were observed at higher levels of dietary CP. These results imply that concentration changes in pAA should be considered during diet formulation when feeding supplemental mMet to support increased milk protein production.
通过添加保护瘤胃的蛋氨酸来提高奶牛的代谢蛋氨酸(mMet)是平衡蛋氨酸日粮的一个常见组成部分。这种做法所带来的血浆Met (pMet)的变化可能影响其他AA的代谢,导致其他血浆AA (pAA)浓度的变化。本荟萃分析的目的是评估泌乳奶牛补充mMet时pAA的变化。文献研究表明,饲喂奶牛的对照日粮和添加蛋氨酸的对照日粮可以作为保护瘤胃的蛋氨酸,也可以通过输注来增加pMet。有41项研究采用60只对照组和78只Met处理,符合选择标准并进入最终分析。进入meta分析的应答以met补充奶牛pAA -对照奶牛pAA计算,并以加权平均差异或标准化加权平均差异进行分析,其中加权项为逆方差,并进行稳健方差估计以解释数据的层次结构。还进行了回归,其中pAA与pMet通过逆方差加权回归,并包括研究和研究中实验的随机效应。对照组奶牛的平均pMet为19.9µM,随添加量增加11.3µM。含硫pAA、Cys、同型半胱氨酸和Lys随pMet升高而升高,Gln、Glu、His、Ile、Leu、Tyr和Val随pMet升高而降低。pAA Arg、Gly、Orn、Ser、Tau和Trp对pMet的响应呈曲线状,在中等浓度的pMet时,Arg、Orn、Tau和Trp的响应达到峰值,而Gly和sera的响应达到最低点。乳蛋白产量的增加与pMet的增加有关,但对添加蛋氨酸的反应似乎受到其他pAA减少的限制,因为在饲粮CP水平较高的情况下,对pMet的反应也较高。这些结果表明,在饲粮中添加mMet以支持提高乳蛋白产量时,应考虑pAA浓度的变化。
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引用次数: 0
Predicting individual dry matter intake in Holstein × Gyr cows using behavior-monitoring sensor, phenotypic, and weather data with supervised machine learning 利用行为监测传感器、表型和天气数据,结合监督式机器学习预测荷斯坦×吉尔奶牛的个体干物质摄入量。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2026-01-16 DOI: 10.3168/jdsc.2025-0850
Camila S. da Silva , Tadeu E. da Silva , Anna L.L. Sguizatto , Andreia F. Machado , Abias S. Silva , João H.C. Costa , Mariana M. Campos , Domingos S.C. Paciullo , Carlos A.M. Gomide , Mirton J.F. Morenz
Accurate estimation of DMI is essential for optimizing nutrition, efficiency, and economic performance in modern dairy herds. However, most existing equations to estimate DMI are designed for herd-level predictions in purebred Holstein cows. This study evaluated the accuracy and precision of machine learning (ML) algorithms to predict daily individual DMI in Holstein × Gyr crossbred lactating cows using a supervised and integrative approach that combined behavior monitoring data, cow phenotypes, and weather features. Data from 31 cows were individually and consecutively collected over 18 d. Twenty-two cows (71% of the dataset) were used to train 4 linear regression models (multiple linear, ridge, lasso, and elastic net) and 3 ensemble algorithms (random forest, gradient boosting, and extreme gradient boosting) through leave-one-group-out cross-validation, with the number of folds equal to the number of cows (k = 22). The remaining 9 cows were used as an external test set. Among all algorithms, Gradient boosting achieved the best overall performance, yielding moderate precision (R2 = 0.68) and accuracy (root mean squared error = 1.60 kg/d) metrics on test data. Our results indicate that gradient boosting is more suitable for capturing complex nonlinear relationships underlying daily DMI compared with the other models evaluated. Further advancements in ML-based DMI prediction should consider integrating intra- and interindividual variability in feeding behavior and accounting for animal-specific effects.
准确估计DMI对于优化现代奶牛群的营养、效率和经济表现至关重要。然而,大多数现有的估计DMI的方程都是为纯种荷斯坦奶牛的群体水平预测而设计的。本研究评估了机器学习(ML)算法的准确性和精度,该算法使用监督和综合方法,结合行为监测数据、奶牛表型和天气特征,预测荷斯坦×吉尔杂交泌乳奶牛的每日个体DMI。在18 d内,分别连续采集31头奶牛的数据。利用22头奶牛(占数据集的71%),通过留一组外交叉验证,训练4种线性回归模型(多元线性、脊线、套索和弹性网)和3种集成算法(随机森林、梯度增强和极端梯度增强),折叠次数等于奶牛数量(k = 22)。其余9头奶牛作为外部试验组。在所有算法中,梯度增强算法的综合性能最好,对测试数据的精度(R2 = 0.68)和准确度(均方根误差= 1.60 kg/d)指标中等。我们的研究结果表明,与其他模型相比,梯度增强模型更适合捕捉日DMI背后的复杂非线性关系。基于ml的DMI预测的进一步发展应该考虑整合摄食行为的个体内部和个体之间的差异,并考虑动物的特定影响。
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引用次数: 0
Decreasing the computing time of approximated reliabilities of genomic estimated breeding values in the single-step genomic best linear unbiased predictor using different core sizes for the algorithm for proven and young 采用不同核心大小的单步基因组最佳线性无偏预测器,减少了已验证和年轻的基因组估计育种值的近似可靠性的计算时间。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2026-01-22 DOI: 10.3168/jdsc.2025-0892
S.N. Sanchez-Sierra , Matias Bermann , Natascha Vukasinovic , Miguel A. Sánchez-Castro , Ignacy Misztal , Daniela Lourenco
The single-step genomic best linear unbiased predictor (ssGBLUP) along with the algorithm for proven and young (APY) are used to compute GEBV in livestock populations with extensive genomic data. Calculating GEBV reliabilities is computationally expensive, particularly with many genotyped animals, because it requires inverting the left-hand side of the mixed model equations. However, reliabilities in ssGBLUP models can be approximated by leveraging the sparse structure of the APY. The primary computational bottleneck of the algorithm lies in a matrix multiplication step, which scales quadratically with the size of the core set. This study aimed to decrease the computing time for approximating GEBV reliabilities in ssGBLUP by reducing the size of the core set in APY without compromising the precision of the reliability approximations. Reliabilities were approximated for a single-trait model for calf respiratory disease in Holsteins (h2 = 0.042). A dataset comprising 4,563,070 animals in the pedigree, 1,629,592 genotypes, and 1,585,306 records was used for the study. Core sets of varying sizes (25k, 20k, 15k, 10k, and 5k) were evaluated. Approximated reliabilities obtained with a core set size of 25k were used as a comparison benchmark. Correlations between approximated reliabilities obtained with different core sizes and the benchmark ranged from 0.94 to 1.00, whereas the intercept and slope of the regression of the benchmark reliabilities on the smaller core reliabilities ranged from −0.16 to 0.38 and from 0.64 to 1.15, respectively. Computing times varied significantly, with the fastest approximation (55.02 min) achieved using a 5k core, compared with 171.27 min for the 25k core benchmark. This represents a 3.1-fold reduction in computing time and a 2.1-fold reduction in memory usage when comparing the 25k core size with the 5k core size. Additionally, more substantial savings can be obtained as the number of traits increases. Having fewer genotyped animals in the APY core is a reasonable approach to accelerate GEBV reliability calculations; however, changes in the approximated reliabilities occur, underscoring the trade-off between computational efficiency and the accuracy of the approximations.
单步基因组最佳线性无偏预测器(ssGBLUP)与成熟和年轻(APY)算法一起用于计算具有广泛基因组数据的牲畜种群的GEBV。计算GEBV的可靠性在计算上是昂贵的,特别是对于许多基因型动物,因为它需要反转混合模型方程的左侧。然而,ssGBLUP模型中的可靠性可以通过利用APY的稀疏结构来近似。该算法的主要计算瓶颈在于矩阵乘法步骤,该步骤与核心集的大小成二次增长。本研究旨在通过减少APY中核心集的大小,在不影响可靠性近似精度的情况下,减少ssGBLUP中GEBV可靠性近似的计算时间。对荷斯坦小牛呼吸道疾病的单性状模型进行了信度近似(h2 = 0.042)。该研究使用了一个包含谱系中4,563,070只动物,1,629,592种基因型和1,585,306条记录的数据集。评估了不同大小的核心集(25k、20k、15k、10k和5k)。使用核心集大小为25k时获得的近似可靠性作为比较基准。不同核心尺寸的近似信度与基准的相关性为0.94 ~ 1.00,而基准信度对较小核心信度的回归截距和斜率分别为-0.16 ~ 0.38和0.64 ~ 1.15。计算时间差异很大,使用5k内核可以达到最快的近似值(55.02分钟),而使用25k内核基准则为171.27分钟。这表示在比较25k内核大小和5k内核大小时,计算时间减少了3.1倍,内存使用减少了2.1倍。此外,随着性状数量的增加,可以获得更大的节省。在APY核心中使用较少的基因型动物是加速GEBV可靠性计算的合理方法;然而,在估计的可靠性发生变化,强调计算效率和估计的准确性之间的权衡。
{"title":"Decreasing the computing time of approximated reliabilities of genomic estimated breeding values in the single-step genomic best linear unbiased predictor using different core sizes for the algorithm for proven and young","authors":"S.N. Sanchez-Sierra ,&nbsp;Matias Bermann ,&nbsp;Natascha Vukasinovic ,&nbsp;Miguel A. Sánchez-Castro ,&nbsp;Ignacy Misztal ,&nbsp;Daniela Lourenco","doi":"10.3168/jdsc.2025-0892","DOIUrl":"10.3168/jdsc.2025-0892","url":null,"abstract":"<div><div>The single-step genomic best linear unbiased predictor (ssGBLUP) along with the algorithm for proven and young (APY) are used to compute GEBV in livestock populations with extensive genomic data. Calculating GEBV reliabilities is computationally expensive, particularly with many genotyped animals, because it requires inverting the left-hand side of the mixed model equations. However, reliabilities in ssGBLUP models can be approximated by leveraging the sparse structure of the APY. The primary computational bottleneck of the algorithm lies in a matrix multiplication step, which scales quadratically with the size of the core set. This study aimed to decrease the computing time for approximating GEBV reliabilities in ssGBLUP by reducing the size of the core set in APY without compromising the precision of the reliability approximations. Reliabilities were approximated for a single-trait model for calf respiratory disease in Holsteins (h<sup>2</sup> = 0.042). A dataset comprising 4,563,070 animals in the pedigree, 1,629,592 genotypes, and 1,585,306 records was used for the study. Core sets of varying sizes (25k, 20k, 15k, 10k, and 5k) were evaluated. Approximated reliabilities obtained with a core set size of 25k were used as a comparison benchmark. Correlations between approximated reliabilities obtained with different core sizes and the benchmark ranged from 0.94 to 1.00, whereas the intercept and slope of the regression of the benchmark reliabilities on the smaller core reliabilities ranged from −0.16 to 0.38 and from 0.64 to 1.15, respectively. Computing times varied significantly, with the fastest approximation (55.02 min) achieved using a 5k core, compared with 171.27 min for the 25k core benchmark. This represents a 3.1-fold reduction in computing time and a 2.1-fold reduction in memory usage when comparing the 25k core size with the 5k core size. Additionally, more substantial savings can be obtained as the number of traits increases. Having fewer genotyped animals in the APY core is a reasonable approach to accelerate GEBV reliability calculations; however, changes in the approximated reliabilities occur, underscoring the trade-off between computational efficiency and the accuracy of the approximations.</div></div>","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":"7 2","pages":"Pages 222-226"},"PeriodicalIF":2.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147367581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of incubation with endocannabinoids on the expression of endocannabinoid and inflammatory components following an ex vivo lipopolysaccharide challenge in leukocytes of dairy cows 内源性大麻素孵育对奶牛体外脂多糖攻击后白细胞内源性大麻素和炎症成分表达的影响
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2025-12-13 DOI: 10.3168/jdsc.2025-0866
P. dos Santos Silva , Y. Butenko , L. Hubner , B. Shattenstein , M. Zachut
<div><div>The endocannabinoid system (ECS) is involved in regulating immune functions in leukocytes. An inflammatory stimulus, specifically LPS, can modulate the activity of endocannabinoids (eCB) receptors, and eCB within the leukocytes can further exert either pro- or anti-inflammatory effects on the immune function of these cells. The effects of exogenous eCB on the cellular inflammatory responses of bovine leukocytes are largely unexplored; therefore, we aimed to evaluate the effects of incubation with the main eCB <em>N</em>-arachidonoylethanolamide (AEA/anandamide) or 2-arachidonyglycerol (2-AG) on gene expression of eCB and inflammatory mediators following an ex vivo LPS challenge in dairy cow leukocytes. To this end, whole blood from mid-lactation dairy cows (n = 6) were subjected to ex vivo incubation with eCB (control [CTL], AEA at 0.29 µ<em>M</em>, or 2-AG at 0.26 µ<em>M</em>) for 2 h, followed by stimulation with or without LPS (10 ng/mL) for an additional 2 h. Overall, there were 6 treatments for cells from each cow: CTL, AEA, and 2-AG without LPS stimulation, and CTL+LPS, AEA+LPS, and 2-AG+LPS. Subsequently, RNA was extracted from leukocytes and assayed for gene expression levels via real-time quantitative PCR. First, we examined the main effects of LPS stimulation across eCB treatments: LPS decreased expression of the eCB receptors cannabinoid receptor 2 (<em>CNR2</em>), G protein-coupled receptor 55 (<em>GPR55</em>), and peroxisome proliferator-activated receptor gamma (<em>PPARG</em>). Furthermore, LPS increased expression of the eCB enzymes N-acyl phosphatidylethanolamine phospholipase D (<em>NAPEPLD</em>) and monoglyceride lipase (<em>MGLL</em>) while reducing the expression of diacylglycerol lipase B (<em>DAGLB</em>) compared with non-LPS-stimulated groups. Then, we examined the main effects of eCB treatments on gene expression: incubation with AEA increased expression of cannabinoid receptor 1 (<em>CNR1</em>) in leukocytes, whereas 2-AG increased the expression of the <em>CNR2</em> and tended to increase <em>GPR55</em>. In addition, 2-AG increased the expression of fatty acid amide hydrolase (<em>FAAH</em>) and tended to increase the expression of <em>NAPEPLD</em>. As expected, LPS increased the expression of inflammatory markers; however, incubation with eCB had no discernible effects on these genes. Taken together, ex vivo exposure of dairy cow leukocytes to AEA or 2-AG, with or without stimulation with LPS, resulted in differential effects on the expression of eCB receptors and enzymes, but we did not detect effects of exogenous eCB on the expression of inflammatory genes following an LPS challenge. The findings of the present study provide the first reductionist step in understanding the relationship between the ECS and inflammatory responses in immune cells of dairy cows. The complexity of the regulation of immune function in leukocytes, and its potential interplay with eCB, requires further studies to comprehensively el
内源性大麻素系统(ECS)参与调节白细胞的免疫功能。炎症刺激,特别是LPS,可以调节内源性大麻素(eCB)受体的活性,而白细胞内的eCB可以进一步对这些细胞的免疫功能发挥促或抗炎作用。外源性eCB对牛白细胞细胞炎症反应的影响在很大程度上尚未探索;因此,我们的目的是评估在体外LPS攻击奶牛白细胞后,用主要eCB n -花生四烯酰乙醇酰胺(AEA/anandamide)或2-花生四烯酰甘油(2-AG)孵育对eCB和炎症介质基因表达的影响。为此,将泌乳中期奶牛的全血(n = 6)与eCB(对照[CTL], 0.29µM AEA或0.26µM 2- ag)体外孵育2小时,然后再进行LPS (10 ng/mL)刺激或不刺激2小时。总体而言,对每头奶牛的细胞进行6种处理:CTL、AEA和2- ag不刺激,以及CTL+LPS、AEA+LPS和2- ag +LPS。随后,从白细胞中提取RNA,通过实时定量PCR检测基因表达水平。首先,我们检查了LPS刺激在eCB处理中的主要作用:LPS降低了eCB受体大麻素受体2 (CNR2)、G蛋白偶联受体55 (GPR55)和过氧化物酶体增殖物激活受体γ (PPARG)的表达。此外,与非LPS刺激组相比,LPS增加了eCB酶n-酰基磷脂酰乙醇胺磷脂酶D (NAPEPLD)和单甘油酯脂肪酶(MGLL)的表达,降低了二酰基甘油脂肪酶B (DAGLB)的表达。然后,我们研究了eCB处理对基因表达的主要影响:与AEA孵育增加了白细胞中大麻素受体1 (CNR1)的表达,而2-AG增加了CNR2的表达,并倾向于增加GPR55。此外,2-AG增加了脂肪酸酰胺水解酶(FAAH)的表达,并有增加NAPEPLD表达的趋势。正如预期的那样,LPS增加了炎症标志物的表达;然而,用eCB孵育对这些基因没有明显的影响。综上所述,奶牛白细胞在体外暴露于AEA或2-AG,有或没有LPS刺激,会对eCB受体和酶的表达产生不同的影响,但我们没有发现外源性eCB对LPS刺激后炎症基因表达的影响。本研究的发现为理解ECS与奶牛免疫细胞炎症反应之间的关系提供了第一步还原。白细胞免疫功能调控的复杂性及其与eCB的潜在相互作用,需要进一步研究以全面阐明这些反应背后的细胞机制。
{"title":"Effects of incubation with endocannabinoids on the expression of endocannabinoid and inflammatory components following an ex vivo lipopolysaccharide challenge in leukocytes of dairy cows","authors":"P. dos Santos Silva ,&nbsp;Y. Butenko ,&nbsp;L. Hubner ,&nbsp;B. Shattenstein ,&nbsp;M. Zachut","doi":"10.3168/jdsc.2025-0866","DOIUrl":"10.3168/jdsc.2025-0866","url":null,"abstract":"&lt;div&gt;&lt;div&gt;The endocannabinoid system (ECS) is involved in regulating immune functions in leukocytes. An inflammatory stimulus, specifically LPS, can modulate the activity of endocannabinoids (eCB) receptors, and eCB within the leukocytes can further exert either pro- or anti-inflammatory effects on the immune function of these cells. The effects of exogenous eCB on the cellular inflammatory responses of bovine leukocytes are largely unexplored; therefore, we aimed to evaluate the effects of incubation with the main eCB &lt;em&gt;N&lt;/em&gt;-arachidonoylethanolamide (AEA/anandamide) or 2-arachidonyglycerol (2-AG) on gene expression of eCB and inflammatory mediators following an ex vivo LPS challenge in dairy cow leukocytes. To this end, whole blood from mid-lactation dairy cows (n = 6) were subjected to ex vivo incubation with eCB (control [CTL], AEA at 0.29 µ&lt;em&gt;M&lt;/em&gt;, or 2-AG at 0.26 µ&lt;em&gt;M&lt;/em&gt;) for 2 h, followed by stimulation with or without LPS (10 ng/mL) for an additional 2 h. Overall, there were 6 treatments for cells from each cow: CTL, AEA, and 2-AG without LPS stimulation, and CTL+LPS, AEA+LPS, and 2-AG+LPS. Subsequently, RNA was extracted from leukocytes and assayed for gene expression levels via real-time quantitative PCR. First, we examined the main effects of LPS stimulation across eCB treatments: LPS decreased expression of the eCB receptors cannabinoid receptor 2 (&lt;em&gt;CNR2&lt;/em&gt;), G protein-coupled receptor 55 (&lt;em&gt;GPR55&lt;/em&gt;), and peroxisome proliferator-activated receptor gamma (&lt;em&gt;PPARG&lt;/em&gt;). Furthermore, LPS increased expression of the eCB enzymes N-acyl phosphatidylethanolamine phospholipase D (&lt;em&gt;NAPEPLD&lt;/em&gt;) and monoglyceride lipase (&lt;em&gt;MGLL&lt;/em&gt;) while reducing the expression of diacylglycerol lipase B (&lt;em&gt;DAGLB&lt;/em&gt;) compared with non-LPS-stimulated groups. Then, we examined the main effects of eCB treatments on gene expression: incubation with AEA increased expression of cannabinoid receptor 1 (&lt;em&gt;CNR1&lt;/em&gt;) in leukocytes, whereas 2-AG increased the expression of the &lt;em&gt;CNR2&lt;/em&gt; and tended to increase &lt;em&gt;GPR55&lt;/em&gt;. In addition, 2-AG increased the expression of fatty acid amide hydrolase (&lt;em&gt;FAAH&lt;/em&gt;) and tended to increase the expression of &lt;em&gt;NAPEPLD&lt;/em&gt;. As expected, LPS increased the expression of inflammatory markers; however, incubation with eCB had no discernible effects on these genes. Taken together, ex vivo exposure of dairy cow leukocytes to AEA or 2-AG, with or without stimulation with LPS, resulted in differential effects on the expression of eCB receptors and enzymes, but we did not detect effects of exogenous eCB on the expression of inflammatory genes following an LPS challenge. The findings of the present study provide the first reductionist step in understanding the relationship between the ECS and inflammatory responses in immune cells of dairy cows. The complexity of the regulation of immune function in leukocytes, and its potential interplay with eCB, requires further studies to comprehensively el","PeriodicalId":94061,"journal":{"name":"JDS communications","volume":"7 2","pages":"Pages 284-289"},"PeriodicalIF":2.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147367685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Potential roles of colostrum microbiota in shaping calf gut microbiota and colostrum metabolites 初乳微生物群在犊牛肠道微生物群和初乳代谢物形成中的潜在作用。
IF 2.2 Pub Date : 2026-03-01 Epub Date: 2026-01-16 DOI: 10.3168/jdsc.2025-0883
Jalyn Hawkins , Shelby Carpenter , Himani Joshi , Chuan-Yu Hsu , Caleb Lemley , Peixin Fan
Colostrum provides vital nutrients and antibodies that are crucial for calf health and survival. It also contains microbes that may be vertically transmitted to calves and influence early gut microbiota development. These microbes in colostrum may also biologically function to produce unique metabolites that affect colostrum quality and calf growth. However, these colostrum components remain largely unexplored. The aim of this study was to identify colostrum-derived microbes capable of colonizing and persisting in the calf gut and to characterize colostrum metabolomics in relation to the colostrum microbiota. Colostrum samples were collected from 25 Holstein heifers, and fecal samples were collected from their individually housed Holstein-Angus crossbred offspring on d 4, 7, 14, and 30 after birth. Colostrum and fecal microbiota were analyzed using full-length 16S rRNA gene amplicon sequencing, whereas the untargeted metabolomics was performed using ultra-performance liquid chromatography MS. We identified 20% prevalent colostrum bacteria (15 species) were consistently detected in calf fecal samples across all time points, indicating their potential to colonize and persist in the early gut, although the relative abundance of these species in calf feces gradually decreased from d 4 to 30. Colostrum samples were classified into 3 distinct clusters based on the dominant species: Streptococcus thermophilus, Lactococcus lactis, and Comamonas testosteroni. Three colostrum samples from each cluster were selected as a focal group for the untargeted metabolomics analysis. We identified a total of 405 metabolites present in the colostrum samples. No significant differences in metabolomic profiles were observed among the 3 microbial clusters, indicating that colostrum microbiota were not the main drivers of metabolomic dynamics. However, 54 strong positive correlations were detected between bacterial species and metabolites, particularly between colostrum-calf feces shared species and microbial-derived metabolites. For example, 4-methylphenol was positively associated with Bacteroides fragilis, the most abundant bacterial species in calf feces on d 4. In addition, Streptococcus uberis, a pathogen associated with mastitis, exhibited the greatest number of strong negative correlations with metabolites. In conclusion, this study identified specific colostrum bacterial species with the potential to transmit and persist in the calf gut microbiota and to contribute to microbial metabolite production. Further research is warranted to evaluate the roles of these persistent microbes and their metabolites in shaping colostrum quality, calf growth, and health outcomes.
初乳提供重要的营养和抗体,对小牛的健康和生存至关重要。它还含有可能垂直传播给小牛并影响早期肠道微生物群发育的微生物。初乳中的这些微生物也可能具有生物学功能,产生影响初乳质量和小牛生长的独特代谢物。然而,这些初乳成分在很大程度上仍未被探索。本研究的目的是鉴定能够在小牛肠道中定植和持续存在的初乳衍生微生物,并表征初乳代谢组学与初乳微生物群的关系。选取25头荷斯坦小母牛的初乳和单独饲养的荷斯坦-安格斯杂交后代,分别于出生后第4、7、14和30天采集粪便样本。使用16S rRNA基因扩增子测序对初乳和粪便微生物群进行了分析,而非靶向代谢组学则使用超高效液相色谱法进行了ms分析。我们发现,在所有时间点,犊牛粪便样本中始终检测到20%普遍存在的初乳细菌(15种),这表明它们有可能在早期肠道中定植并持续存在,尽管这些物种在犊牛粪便中的相对丰度从第4天到第30天逐渐减少。根据优势种将初乳样品分为3个不同的簇:嗜热链球菌、乳酸乳球菌和睾酮单胞菌。从每个群中选择3个初乳样本作为非靶向代谢组学分析的焦点组。我们在初乳样品中鉴定出总共405种代谢物。3个微生物群之间的代谢组学特征没有显著差异,表明初乳微生物群不是代谢组动力学的主要驱动因素。然而,在细菌种类和代谢物之间检测到54强正相关,特别是在初乳-小牛粪便共享种类和微生物衍生代谢物之间。例如,4-甲基苯酚与第4天犊牛粪便中最丰富的脆弱拟杆菌(Bacteroides fragilis)呈正相关。此外,与乳腺炎相关的ubercoccus与代谢物表现出最多的强负相关。总之,本研究确定了特定的初乳细菌种类,它们有可能在小牛肠道微生物群中传播和持续存在,并有助于微生物代谢物的产生。需要进一步的研究来评估这些持久性微生物及其代谢物在塑造初乳质量、小牛生长和健康结果中的作用。
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引用次数: 0
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JDS communications
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