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Fiber- and acetate-mediated modulation of MHC-II expression on intestinal epithelium protects from Clostridioides difficile infection 纤维和醋酸盐介导的肠上皮MHC-II表达调节可保护肠上皮免受艰难梭菌感染
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-17 DOI: 10.1016/j.chom.2024.12.017
José L. Fachi, Sarah de Oliveira, Tihana Trsan, Silvia Penati, Susan Gilfillan, Siyan Cao, Pollyana Ribeiro Castro, Mariane Font Fernandes, Krzysztof L. Hyrc, Xiuli Liu, Patrick Fernandes Rodrigues, Bishan Bhattarai, Brian T. Layden, Marco Aurélio R. Vinolo, Marco Colonna
Here, we explore the relationship between dietary fibers, colonic epithelium major histocompatibility complex class II (MHC-II) expression, and immune cell interactions in regulating susceptibility to Clostridioides difficile infection (CDI). We find that a low-fiber diet increases MHC-II expression in the colonic epithelium, which, in turn, worsens CDI by promoting the development of pathogenic CD4+ intraepithelial lymphocytes (IELs). The influence of dietary fibers on MHC-II expression is mediated by its metabolic product, acetate, and its receptor, free fatty acid receptor 2 (FFAR2). While acetate activation of FFAR2 on epithelial cells helps resist CDI, it does not directly regulate MHC-II expression. Instead, MHC-II is regulated by FFAR2 in type 3 innate lymphoid cells (ILC3s). Acetate enhances interleukin-22 (IL-22) production by ILC3s, which then suppresses MHC-II expression on the colonic epithelium. In conclusion, a low-fiber diet reduces acetate-induced IL-22 production by ILC3s, leading to increased MHC-II on the colonic epithelium. This change affects recovery from CDI by expanding the population of pathogenic CD4+ IELs.
在这里,我们探讨了膳食纤维、结肠上皮主要组织相容性复合体II类(MHC-II)表达和免疫细胞相互作用在调节艰难梭菌感染(CDI)易感性中的关系。我们发现低纤维饮食增加了结肠上皮中MHC-II的表达,这反过来又通过促进致病性CD4+上皮内淋巴细胞(iel)的发展而恶化了CDI。膳食纤维对MHC-II表达的影响是通过其代谢产物醋酸酯及其受体游离脂肪酸受体2 (FFAR2)介导的。虽然上皮细胞上FFAR2的醋酸活化有助于抵抗CDI,但它并不直接调节MHC-II的表达。相反,MHC-II在3型先天淋巴样细胞(ILC3s)中由FFAR2调节。醋酸盐通过ILC3s增强白细胞介素-22 (IL-22)的产生,进而抑制结肠上皮上MHC-II的表达。综上所述,低纤维饮食减少了醋酸盐诱导的ILC3s产生IL-22,导致结肠上皮上MHC-II增加。这种变化通过扩大致病性CD4+ IELs的数量影响CDI的恢复。
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引用次数: 0
Decoding the blueprint of receptor binding by filoviruses through large-scale binding assays and machine learning 通过大规模结合实验和机器学习解码丝状病毒受体结合的蓝图
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-15 DOI: 10.1016/j.chom.2024.12.016
Gorka Lasso, Michael Grodus, Estefania Valencia, Veronica DeJesus, Eliza Liang, Isabel Delwel, Rob H. Bortz, Dmitry Lupyan, Hanna Y. Ehrlich, Adrian A. Castellanos, Andrea Gazzo, Heather L. Wells, Supaporn Wacharapluesadee, Alexandre Tremeau-Bravard, Janine F.R. Seetahal, Tom Hughes, Jimmy Lee, Mei-Ho Lee, Anna R. Sjodin, Marike Geldenhuys, Simon J. Anthony
Evidence suggests that bats are important hosts of filoviruses, yet the specific species involved remain largely unidentified. Niemann-Pick C1 (NPC1) is an essential entry receptor, with amino acid variations influencing viral susceptibility and species-specific tropism. Herein, we conducted combinatorial binding studies with seven filovirus glycoproteins (GPs) and NPC1 orthologs from 81 bat species. We found that GP-NPC1 binding correlated poorly with phylogeny. By integrating binding assays with machine learning, we identified genetic factors influencing virus-receptor-binding and predicted GP-NPC1-binding avidity for additional filoviruses and bats. Moreover, combining receptor-binding avidities with bat geographic distribution and the locations of previous Ebola outbreaks allowed us to rank bats by their potential as Ebola virus hosts. This study represents a comprehensive investigation of filovirus-receptor binding in bats (1,484 GP-NPC1 pairs, 11 filoviruses, and 135 bats) and describes a multidisciplinary approach to predict susceptible species and guide filovirus host surveillance.
有证据表明,蝙蝠是丝状病毒的重要宿主,但涉及的具体物种在很大程度上仍未确定。Niemann-Pick C1 (NPC1)是一种必需的进入受体,其氨基酸变化影响病毒的易感性和物种特异性趋向性。在此,我们对来自81种蝙蝠的7种丝状病毒糖蛋白(GPs)和NPC1同源物进行了组合结合研究。我们发现GP-NPC1结合与系统发育相关性较差。通过结合实验和机器学习,我们确定了影响病毒受体结合的遗传因素,并预测了其他丝状病毒和蝙蝠的gp - npc1结合度。此外,将受体结合性与蝙蝠的地理分布以及以前埃博拉疫情爆发的地点相结合,使我们能够根据蝙蝠作为埃博拉病毒宿主的潜力对它们进行排名。本研究代表了对蝙蝠(1,484对GP-NPC1, 11种丝状病毒和135只蝙蝠)中丝状病毒受体结合的全面调查,并描述了一种多学科方法来预测易感物种和指导丝状病毒宿主监测。
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引用次数: 0
MFSD6 is an entry receptor for respiratory enterovirus D68 MFSD6是呼吸道肠道病毒D68的一种进入受体
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-10 DOI: 10.1016/j.chom.2024.12.015
Xize Liu, Huili Li, Zhaoxue Li, Delong Gao, Junfeng Zhou, Fushun Ni, Qing Yu, Yuehan Huang, Yubin Tang, Ling Xue, Shijin Wang, Jiaxin Yang, Haoran Guo, Yonggang Wang, Xiao-Fang Yu, Zhenglei Yu, Wei Wei
Enterovirus D68 (EV-D68) is a leading non-polio enterovirus that causes severe respiratory diseases and poliomyelitis-like illness in children. Viral entry represents a potential multifaceted target for antiviral intervention; however, there are no approved inhibitors to block EV-D68. Here, we identify the functionally undescribed membrane protein major facilitator superfamily-domain-containing protein 6 (MFSD6) as an EV-D68 entry factor amenable to therapeutic intervention. Specifically, MFSD6 expression is crucial for EV-D68 replication. MFSD6 binds to EV-D68 particles and is necessary for virus attachment to cells. The second extracellular domain of the MFSD6 molecule is involved in the recognition of EV-D68. On the basis of these findings, we engineered a recombinant protein complex comprising the MFSD6 ectodomain fused to Fc (MFSD6-Fc(CH3)), which potently inhibited EV-D68 uptake. MFSD6-Fc(CH3) effectively blocked EV-D68 infection in vitro and prevented lethality in newborn mice. In conclusion, our study not only identifies MFSD6 as an EV-D68 entry factor but also reveals a potential antiviral target and therapeutic agent.
肠病毒D68 (EV-D68)是一种主要的非脊髓灰质炎肠道病毒,可在儿童中引起严重呼吸道疾病和脊髓灰质炎样疾病。病毒进入代表了抗病毒干预的潜在多方面目标;然而,目前还没有批准的阻断EV-D68的抑制剂。在这里,我们确定了功能未描述的膜蛋白主要促进物超家族结构域蛋白6 (MFSD6)作为一种适合治疗干预的EV-D68进入因子。具体来说,MFSD6的表达对于EV-D68的复制至关重要。MFSD6与EV-D68颗粒结合,是病毒附着于细胞所必需的。MFSD6分子的第二个胞外结构域参与EV-D68的识别。基于这些发现,我们设计了一个包含MFSD6外结构域与Fc融合的重组蛋白复合物(MFSD6-Fc(CH3)),它可以有效地抑制EV-D68的摄取。MFSD6-Fc(CH3)能有效阻断EV-D68体外感染,防止新生小鼠死亡。总之,我们的研究不仅确定了MFSD6作为EV-D68的进入因子,而且揭示了一个潜在的抗病毒靶点和治疗剂。
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引用次数: 0
Exploring the open (host) range 探索开放(主机)范围
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-08 DOI: 10.1016/j.chom.2024.12.014
David A. Baltrus, Brian H. Kvitko
The report from Grenz et al. in the latest issue of Cell Host & Microbe demonstrates how incorporation of phenotypic, genetic, genomic, and evolutionary information into experimental design provides a more complete picture than focusing on single host-pathogen relationships.
Grenz等人在最新一期Cell Host &;微生物展示了如何将表型、遗传、基因组和进化信息结合到实验设计中,提供了比专注于单一宿主-病原体关系更完整的画面。
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引用次数: 0
The intestinal fungus Aspergillus tubingensis promotes polycystic ovary syndrome through a secondary metabolite 肠道真菌塔宾曲霉通过次级代谢物促进多囊卵巢综合征
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-08 DOI: 10.1016/j.chom.2024.12.006
Jiayu Wu, Kai Wang, Xinyu Qi, Shuang Zhou, Shuyun Zhao, Meisong Lu, Qixing Nie, Meng Li, Mengwei Han, Xi Luo, Chuyu Yun, Pengcheng Wang, Rong Li, Chao Zhong, Xiaofei Yu, Wen-bing Yin, Changtao Jiang, Jie Qiao, Yanli Pang
Polycystic ovary syndrome (PCOS) affects 6%–10% of women of reproductive age and is known to be associated with disruptions in the gut bacteria. However, the role of the gut mycobiota in PCOS pathology remains unclear. Using culture-dependent and internal transcribed spacer 2 (ITS2)-sequencing methods, we discovered an enrichment of the gut-colonizable fungus Aspergillus tubingensis in 226 individuals, with or without PCOS, from 3 different geographical areas within China. Colonization of mice with A. tubingensis led to a PCOS-like phenotype due to inhibition of Aryl hydrocarbon receptor (AhR) signaling and reduced interleukin (IL)-22 secretion in intestinal group 3 innate lymphoid cells (ILC3s). By developing a strain-diversity-based-activity metabolite screening workflow, we identified secondary metabolite AT-C1 as an endogenous AhR antagonist and a key mediator of PCOS. Our findings demonstrate that an intestinal fungus and its secondary metabolite play a critical role in PCOS pathogenesis, offering a therapeutic strategy for improving the management of the disease.
多囊卵巢综合征(PCOS)影响6%-10%的育龄妇女,已知与肠道细菌的破坏有关。然而,肠道菌群在多囊卵巢综合征病理中的作用尚不清楚。利用培养依赖和内部转录间隔2 (ITS2)测序方法,我们在中国3个不同地理区域的226个有或没有PCOS的个体中发现了可肠道定植的真菌塔宾曲霉(Aspergillus tubingensis)。由于抑制芳烃受体(AhR)信号传导和减少肠道第3组先天淋巴样细胞(ILC3s)中白细胞介素(IL)-22的分泌,tubingensis定植小鼠导致pcos样表型。通过建立基于菌株多样性的活性代谢物筛选流程,我们确定了次生代谢物AT-C1是内源性AhR拮抗剂和PCOS的关键介质。我们的研究结果表明,肠道真菌及其次生代谢物在多囊卵巢综合征的发病机制中起着关键作用,为改善该病的治疗提供了一种治疗策略。
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引用次数: 0
Fungal influence: The role of the gut mycobiome in women’s health 真菌的影响:肠道菌群在女性健康中的作用
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-08 DOI: 10.1016/j.chom.2024.12.005
Tian-Yi Zhang, Ning-Ning Liu
In this issue of Cell Host & Microbe, Wu et al. identified enriched gut Aspergillus tubingensis in patients with polycystic ovary syndrome (PCOS). In mice, this fungus induced a PCOS-like phenotype by inhibiting interleukin (IL)-22 secretion from ILC3s via the AT-C1-AhR axis. PCOS, a women’s health concern, is influenced by the gut mycobiome.
在本期《细胞宿主》杂志中;微生物,Wu等人在多囊卵巢综合征(PCOS)患者的肠道中发现了富集的塔宾曲霉。在小鼠中,这种真菌通过抑制IL - c3s通过AT-C1-AhR轴分泌白细胞介素(IL)-22诱导pcos样表型。多囊卵巢综合征是一种女性健康问题,受肠道菌群的影响。
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引用次数: 0
Commensal fungi, a force to be reckoned with 共生真菌,一股不可忽视的力量
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-08 DOI: 10.1016/j.chom.2024.12.012
Dingjiacheng Jia, Shujie Chen
Fungal symbionts play a key role in maintaining host homeostasis. In a recent issue of Nature, Liao et al. show that Kazachstania pintolopesii, a symbiotic fungus in mice, is shielded from the host immune system during homeostasis but induces type 2 immunity during mucus fluctuations.
真菌共生体在维持寄主体内平衡中起着关键作用。在最近一期的《自然》杂志上,Liao等人发现小鼠体内的一种共生真菌Kazachstania pintolopesii在体内稳态期间被宿主免疫系统屏蔽,但在粘液波动期间诱导2型免疫。
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引用次数: 0
The butterfly effect of the strain richness influences the efficacy of microbiota transplantation 菌株丰富度的蝴蝶效应影响菌群移植的效果
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-08 DOI: 10.1016/j.chom.2024.12.010
Weihong Wang, Zheshun Pi, You Yu, Faming Zhang
Strain-level variation in the gut microbiome modulates its impact on host health. Recently in Nature, Chen-Liaw et al. propose that strain richness is a crucial element in the gut ecosystem, thus influencing efficacy of fecal microbiota transplantation, and provide a theoretical foundation for optimizing microbiota-based treatments and developing microbiota medicine.
肠道微生物组的菌株水平变化调节其对宿主健康的影响。Chen-Liaw等人最近在Nature上提出菌株丰富度是肠道生态系统的关键因素,从而影响粪便微生物群移植的效果,为优化微生物群治疗和开发微生物群药物提供了理论基础。
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引用次数: 0
Cad1 turns ATP into phage poison Cad1将ATP转化为噬菌体毒素
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-08 DOI: 10.1016/j.chom.2024.12.013
Jinzhong Lin, Yuvaraj Bhoobalan-Chitty, Xu Peng
Type III CRISPR-Cas executes a multifaceted anti-phage response, activating effectors such as a nuclease or membrane depolarizer. In a recent Cell paper, Baca and Majumder et al.1 report an accessory effector, Cad1, which deaminates ATP into ITP, causing ITP accumulation and host growth arrest, thereby inhibiting phage propagation.
III型CRISPR-Cas执行多方面的抗噬菌体反应,激活效应物,如核酸酶或膜去极化剂。在最近的Cell论文中,Baca和Majumder等人报道了一种辅助效应物Cad1,它将ATP分解成ITP,导致ITP积累和宿主生长停滞,从而抑制噬菌体的繁殖。
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引用次数: 0
Clec12a controls colitis by tempering inflammation and restricting expansion of specific commensals Clec12a通过缓和炎症和限制特定共生体的扩张来控制结肠炎
IF 30.3 1区 医学 Q1 MICROBIOLOGY Pub Date : 2025-01-08 DOI: 10.1016/j.chom.2024.12.009
Tyson R. Chiaro, Morgan Greenewood, Kaylyn M. Bauer, Kyla S. Ost, Emmanuel Stephen-Victor, Michaela Murphy, Allison M. Weis, Morgan C. Nelson, Jennifer H. Hill, Rickesha Bell, Warren Voth, Taylor Jackson, Kendra A. Klag, Ryan M. O’Connell, W. Zac Stephens, June L. Round
Microbiota composition regulates colitis severity, yet the innate immune mechanisms that control commensal communities and prevent disease remain unclear. We show that the innate immune receptor, Clec12a, impacts colitis severity by regulating microbiota composition. Transplantation of microbiota from a Clec12a−/− animal is sufficient to worsen colitis in wild-type mice. Clec12a−/− mice have expanded Faecalibaculum rodentium, and treatment with F. rodentium similarly exacerbates disease. However, Clec12a−/− animals are resistant to colitis development when rederived into an 11-member community, underscoring the role of specific species. Colitis in Clec12a−/− mice is dependent on monocytes, and cytokine and sequencing analysis in Clec12a−/− macrophages and serum shows enhanced inflammation with a reduction in phagocytic genes. F. rodentium specifically binds to Clec12a, and Clec12a−/−-deficient macrophages are impaired in their ability to phagocytose F. rodentium. Thus, Clec12a contributes to an innate-immune-surveillance mechanism that controls the expansion of potentially harmful commensals while limiting inflammation.
微生物群组成调节结肠炎的严重程度,但控制共生群落和预防疾病的先天免疫机制仍不清楚。我们发现先天免疫受体Clec12a通过调节微生物群组成影响结肠炎的严重程度。移植来自Clec12a−/−动物的微生物群足以加重野生型小鼠的结肠炎。Clec12a - / -小鼠已经扩大了啮齿Faecalibaculum rodentium,并且用f.r odenium治疗同样会加剧疾病。然而,当Clec12a - / -动物重新衍生为11个成员的群落时,它们对结肠炎的发展具有抗性,这强调了特定物种的作用。Clec12a - / -小鼠的结肠炎依赖于单核细胞,Clec12a - / -巨噬细胞和血清中的细胞因子和测序分析显示炎症增强,吞噬基因减少。啮齿弧菌特异性地与Clec12a结合,Clec12a - / -缺失的巨噬细胞吞噬啮齿弧菌的能力受损。因此,Clec12a有助于先天免疫监视机制,控制潜在有害共生体的扩张,同时限制炎症。
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引用次数: 0
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Cell host & microbe
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