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A bibliometric analysis of One Health approach in research on antimicrobial resistance 抗菌药耐药性研究中的 "一体健康 "方法文献计量分析
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100077
Zheyi Fang , Shiyi Tu , Jiayan Huang

Background

Antimicrobial resistance (AMR) is a global public health threat that requires actions through One Health intervention. This study aims to trace the historical development of One Health research on AMR to provide evidence supporting future research and actions.

Methods

A bibliometric analysis is conducted with One Health articles in the field of antimicrobial resistance (AMR-OH articles) retrieved from the Web of Science Core Collection (WoSCC). AMR-OH articles refer to articles in the field of AMR that simultaneously involve elements from human health and at least one other domain, including animals, environment, or plants. Three research periods were identified based on the development of global actions in combating AMR. Descriptive analysis of publications, keyword cluster analysis, annual trending topic analysis, and co-authorship analysis were conducted using R software, VOSViewer, and Pajek.

Results

The results indicated that the percentage of AMR-OH articles among all AMR articles increased from 5.21% in 1990 to 20.01% in 2023. Key topics in the current AMR-OH articles included the mechanism of AMR, AMR epidemiology, and public health control strategies. Epidemiological research initially focused on human and animal health and then shifted to environmental factors in the third period. Research at the molecular level focused on the mechanisms of AMR transmission in various domains, along with the dynamics and diversity of antibiotic resistance genes (ARGs). The co-authorship analysis suggested a significant increase in cooperation among low- and middle-income countries in the third period.

Conclusion

The scope of epidemiological research on AMR has expanded by including human, animal, and environmental areas. Moreover, genetic and molecular level research represents the forefront of this field, offering innovative tools to combat AMR in the future. This study suggests further research to translate existing findings into practical implementation of the One Health strategy, and to support globally consistent action in combating AMR.

背景抗菌素耐药性(AMR)是一种全球性的公共卫生威胁,需要通过 "一体健康 "干预措施采取行动。本研究旨在追溯有关 AMR 的 "一体健康 "研究的历史发展,为未来的研究和行动提供证据支持。方法对从科学网核心数据库(WoSCC)检索到的抗菌素耐药性领域的 "一体健康 "文章(AMR-OH 文章)进行文献计量分析。AMR-OH 文章是指同时涉及人类健康和至少一个其他领域(包括动物、环境或植物)的 AMR 领域文章。根据全球抗击 AMR 行动的发展情况,确定了三个研究时期。结果表明,AMR-OH 文章在所有 AMR 文章中所占比例从 1990 年的 5.21% 增加到 2023 年的 20.01%。当前 AMR-OH 文章的主要话题包括 AMR 的机制、AMR 流行病学和公共卫生控制策略。流行病学研究最初侧重于人类和动物健康,然后在第三个时期转向环境因素。分子层面的研究侧重于 AMR 在各个领域的传播机制,以及抗生素耐药基因 (ARG) 的动态和多样性。共同作者分析表明,第三阶段中低收入国家之间的合作显著增加。此外,基因和分子水平的研究代表了这一领域的前沿,为未来抗击 AMR 提供了创新工具。本研究建议进一步开展研究,将现有研究成果转化为 "一个健康 "战略的实际实施,并支持全球采取一致行动抗击 AMR。
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引用次数: 0
Global, regional, and national burden of upper respiratory infections, 1990–2021: Findings from the Global Burden of Disease study 2021 1990-2021 年全球、地区和国家上呼吸道感染负担:2021 年全球疾病负担研究结果
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100084
Shun-Xian Zhang , Yu-Juan Liu , En-Li Tan , Guo-Bing Yang , Yu Wang , Xiao-Jie Hu , Ming-Zi Li , Lei Duan , Shan Lv , Li-Guang Tian , Mu-Xin Chen , Fan-Na Wei , Qin Liu , Yan Lu , Shi-Zhu Li , Pin Yang , Jin-Xin Zheng

Background

Upper respiratory infections (URIs) are common infectious diseases worldwide. Accurate and timely assessment of the disease burden of URIs is crucial for governments to develop comprehensive prevention and control strategies, and to allocate and utilize healthcare resources more efficiently.

Methods

For URIs in Global Burden of Disease (GBD) 2021 database, age-standardized incidence rates (ASIR), age-standardized prevalence rates (ASPR), age-standardized mortality rates (ASMR), disability-adjusted life-years (DALYs), and case numbers for incidence, prevalence, deaths, and DALYs across the globe, five socio-demographic index (SDI) regions, 21 geographical regions, and 204 countries and territories were provided and analyzed. Trends from 1990 to 2021 were described using the average annual percentage change (AAPC), and future URIs burden was projected with a Bayesian age-period-cohort (BAPC) model.

Results

From 1990 to 2021, there was a significant decline in global ASIR (APCC = −289.86, 95% confidence interval [CI]: −298.59 to −281.12), ASPR (AAPC = −4.04, 95% CI: −4.16 to −3.92), ASMR (AAPC = −0.02, 95 % CI: −0.02 to −0.03) and age-standardized DALY rate (AAPC = −0.75, 95% CI: −0.76 to −0.74). The ASIR, ASPR, ASMR, and age-standardized DALY rate were high in elderly for both males and females, and both genders. Similarly, the number of incident cases, prevalence cases, deaths, and DALY cases for URIs was highest in children under five years. The ASMR and age-standardized DALY rate exhibited a negative correlation with SDI across 204 countries and territories in 2021. The ASIR and ASPR for URIs will show an upward trend from 2022 to 2050, while ASMR and age-standardized DALY rate are expected to decline. Low birth weight for gestation remains the leading contributor to deaths related to URIs.

Conclusion

Despite the global decline in URIs burden, significant challenges remain among the elderly population. These findings support the optimization and implementation of public health policies, including targeted vaccination and integrated One Health approaches to reduce the burden in high-risk populations.
背景上呼吸道感染(URI)是全球常见的传染病。准确、及时地评估尿毒症的疾病负担对各国政府制定综合防控策略、更有效地分配和利用医疗资源至关重要。方法对于全球疾病负担(GBD)2021数据库中的尿毒症,提供并分析了全球5个社会人口指数(SDI)地区、21个地理区域以及204个国家和地区的年龄标准化发病率(ASIR)、年龄标准化流行率(ASPR)、年龄标准化死亡率(ASMR)、残疾调整生命年(DALYs)以及发病、流行、死亡和残疾调整生命年的病例数。结果从 1990 年到 2021 年,全球 ASIR 显著下降(APCC = -289.86,95% 置信区间 [CAPC])。86,95% 置信区间[CI]:-298.59 至 -281.12)、ASPR(AAPC = -4.04,95% CI:-4.16 至 -3.92)、ASMR(AAPC = -0.02,95% CI:-0.02 至 -0.03)和年龄标准化残疾调整寿命年率(AAPC = -0.75,95% CI:-0.76 至 -0.74)均有显著下降。老年男性和女性的 ASIR、ASPR、ASMR 和年龄标准化 DALY 率均较高。同样,五岁以下儿童的尿毒症发病人数、患病人数、死亡人数和残疾调整寿命年数也最高。2021 年,204 个国家和地区的 ASMR 和年龄标准化 DALY 率与 SDI 呈负相关。从 2022 年到 2050 年,尿毒症的 ASIR 和 ASPR 将呈上升趋势,而 ASMR 和年龄标准化残疾调整寿命年率预计将下降。尽管全球尿毒症负担有所下降,但老年人口仍面临巨大挑战。这些研究结果支持优化和实施公共卫生政策,包括有针对性的疫苗接种和 "一体健康 "综合方法,以减轻高危人群的负担。
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引用次数: 0
One Health approaches to tackling antimicrobial resistance 应对抗菌药耐药性的 "一体健康 "方法
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100082
M.E.J. Woolhouse
Antimicrobial resistance (AMR) is a significant and growing threat to human health. A recent United Nations General Assembly declaration highlights that those in need must have sustained access to effective treatments. In the absence of a reliable supply of new drugs, pressure on existing drugs can be reduced by minimising demand. Routes to reducing demand include: promotion of WASH (access to clean water, sanitation and hygiene) and Universal Health Coverage (UHC); improved infection control in health care settings; and continued efforts to curtail drug use in agriculture. This is a One Health strategy, requiring coordinated action across the human, livestock and environmental sectors.
抗菌药耐药性(AMR)对人类健康构成了日益严重的威胁。联合国大会最近的一项宣言强调,有需要的人必须能够持续获得有效的治疗。在缺乏可靠的新药供应的情况下,可以通过最大限度地减少需求来减轻现有药物的压力。减少需求的途径包括:推广讲卫生运动(获得清洁水、环境卫生和个人卫生)和全民医保(UHC);改善医疗机构的感染控制;继续努力减少农业用药。这是一项 "一个健康 "战略,需要人类、畜牧业和环境部门采取协调一致的行动。
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引用次数: 0
Emergence of plasmid-mediated tigecycline resistance tet(X4) gene in Enterobacterales isolated from wild animals in captivity 从人工饲养的野生动物体内分离出的肠杆菌中出现质粒介导的耐虎头环素基因 tet(X4)
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100069
Lei Lei , Panfeng Xiong , Zelin Yan , Yanyan Zhang , Yuchen Wu , Gongxiang Chen , Houhui Song , Rong Zhang

Background

Over the past few decades, antimicrobial resistance (AMR) has emerged as a global health challenge in human and veterinary medicine. Research on AMR genes in captive wild animals has increased. However, the presence and molecular characteristics of tet(X)-carrying bacteria in these animals remain unknown.

Methods

Eighty-four samples were collected from captive wild animals. tet(X) variants were detected using polymerase chain reaction and the isolates were identified using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. All isolated strains were subjected to antimicrobial susceptibility testing and whole-genome sequencing. The virulence of an Escherichia coli strain carrying enterotoxin genes was assessed using a Galleria mellonella larval model.

Results

We isolated two tet(X4)-positive E. coli strains and one tet(X4)-positive Raoultella ornithinolytica strain. Antimicrobial susceptibility tests revealed that all three tet(X4)-carrying bacteria were sensitive to the 13 tested antimicrobial agents, but exhibited resistance to tigecycline. Notably, one tet(X4)-carrying E. coli strain producing an enterotoxin had a toxic effect on G. mellonella larvae. Whole-genome sequencing analysis showed that the two tet(X4)-carrying E. coli strains had more than 95% similarity to tet(X4)-containing E. coli strains isolated from pigs and humans in China.

Conclusion

The genetic environment of tet(X4) closely resembled that of the plasmid described in previous studies. Our study identified tet(X4)-positive strains in wildlife and provided valuable epidemiological data for monitoring drug resistance. The identification of enterotoxin-producing E. coli strains also highlights the potential risks posed by virulence genes.

背景在过去的几十年里,抗菌药耐药性(AMR)已成为人类和兽医面临的全球性健康挑战。对圈养野生动物中 AMR 基因的研究也在增加。采用聚合酶链式反应检测 tet(X)变体,并采用基质辅助激光解吸/电离飞行时间质谱法鉴定分离菌株。对所有分离菌株进行了抗菌药敏感性测试和全基因组测序。结果我们分离出两株 tet(X4)阳性大肠杆菌和一株 tet(X4)阳性鸟疫杆菌。抗菌药敏感性测试显示,这三种携带 tet(X4) 的细菌都对 13 种测试过的抗菌药敏感,但对替加环素表现出耐药性。值得注意的是,一株产生肠毒素的大肠杆菌(tet(X4)-carrying E. coli strain)会对G. mellonella幼虫产生毒性作用。全基因组测序分析表明,这两株携带 tet(X4) 的大肠杆菌与中国从猪和人体内分离出的含有 tet(X4) 的大肠杆菌相似度超过 95%。我们的研究发现了野生动物中的 tet(X4)阳性菌株,为监测耐药性提供了宝贵的流行病学数据。产肠毒素大肠杆菌菌株的鉴定也凸显了毒力基因带来的潜在风险。
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引用次数: 0
Improving health literacy and stakeholder-directed knowledge of One Health through analysis of readability: a cross sectional infodemiology study 通过可读性分析提高 "一体健康 "的健康素养和利益相关者导向知识:一项横断面信息生理学研究
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100088
John E. Moore , Beverley C. Millar
<div><h3>Background</h3><div>The One Health approach involves collaboration across several sectors, including public health, veterinary and environmental sectors in an integrated manner. These sectors may be disparate and unrelated, however to succeed, all stakeholders need to understand what the other stakeholders are communicating. Likewise, it is important that there is public acceptance and support of One Health approaches, which requires effective communication between professional and institutional organisations and the public. To help aid and facilitate such communication, written materials need to be readable by all stakeholders, in order to communicate effectively. There has been an exponential increase in the publication of papers involving One Health, with <5 per year, in the 2000s, to nearly 500 published in 2023. To date, readability of One Health information has not been scrutinised, nor has it been considered as an integral intervention of One Health policy communication. The aim of this study was therefore to examine readability of public-facing One Health information prepared by 24 global organisations.</div></div><div><h3>Methods</h3><div>Readability was calculated using <em>Readable</em> software, to obtain four readability scores [(ⅰ) Flesch Reading Ease (FRE), (ⅱ) Flesch-Kincaid Grade Level (FKGL), (ⅲ) Gunning Fog Index and (ⅳ) SMOG Index] and two text metrics [words/sentence, syllables/word] for 100 sources of One Health information, from four categories [One Health public information; PubMed abstracts; <em>Science in One Health</em> (SOH) abstracts (articles); SOH abstracts (reviews)].</div></div><div><h3>Results</h3><div>Readability of One Health information for the public is poor, not reaching readability reference standards. No information was found that had a readability of less than 9th grade (around 14 years old). Mean values for the FRE and FKGL were (19.4 ± 1.4) (target >60) and (15.6 ± 0.3) (target <8), respectively, with mean words per sentence and syllables per word of 20.5 and 2.0, respectively. Abstracts with “One Health” in the title were more difficult to read than those without “One Health” in the title (FRE: <em>P</em> = 0.0337; FKGL: <em>P</em> = 0.0087). Comparison of FRE and FKGL readability scores for the four categories of One Health information [One Health public information; PubMed abstracts; SOH abstracts (articles); SOH abstracts (reviews)] showed that SOH abstracts from articles were easier to read than those from SOH reviews. No One Health public-facing information from the 100 sources examined met the FKGL target of ≤8. The most easily read One Health information required a Grade Level of 9th grade (14–15 years old), with a mean Grade Level of 15.5 (university/college level).</div></div><div><h3>Conclusion</h3><div>Considerable work is required in making One Health written materials more readable, particularly for children and adolescents (<14 years of age). It is important that any
背景 "同一健康 "方法涉及多个部门的合作,包括公共卫生、兽医和环境部门的综合合作。这些部门可能互不相关,但要取得成功,所有利益相关者都需要了解其他利益相关者在传达什么信息。同样,公众接受和支持 "一体健康 "方法也很重要,这需要专业和机构组织与公众之间进行有效沟通。为了帮助和促进这种沟通,书面材料需要让所有利益相关者都能读懂,以便有效沟通。涉及 "一种健康 "的论文发表量呈指数级增长,从 2000 年代的每年 5 篇增加到 2023 年的近 500 篇。迄今为止,"一体健康 "信息的可读性尚未得到仔细研究,也未被视为 "一体健康 "政策传播中不可或缺的干预措施。因此,本研究旨在对 24 个全球组织编写的面向公众的 "一体健康 "信息的可读性进行审查。方法使用Readable软件对100条 "一种健康 "信息来源进行可读性计算,得出四项可读性评分[(ⅰ) Flesch Reading Ease (FRE)、(ⅱ) Flesch-Kincaid Grade Level (FKGL)、(ⅲ) Gunning Fog Index和(ⅳ) SMOG Index]以及两项文本指标[单词/句子、音节/单词];PubMed摘要;"一种健康 "科学(SOH)摘要(文章);SOH摘要(评论)]。结果 面向公众的 "一种健康 "信息的可读性很差,没有达到可读性参考标准。没有发现可读性低于 9 年级(14 岁左右)的信息。FRE和FKGL的平均值分别为(19.4 ± 1.4)(目标值>60)和(15.6 ± 0.3)(目标值<8),每句平均字数和每字平均音节数分别为20.5和2.0。标题中有 "One Health "的摘要比标题中没有 "One Health "的摘要更难阅读(FRE:P = 0.0337;FKGL:P = 0.0087)。对四类 "一种健康 "信息["一种健康 "公共信息;PubMed 摘要;SOH 摘要(文章);SOH 摘要(评论)]的 FRE 和 FKGL 可读性得分进行比较后发现,文章中的 SOH 摘要比 SOH 评论中的摘要更容易阅读。在所审查的 100 个来源中,没有一个面向公众的 "一个健康 "信息达到 FKGL ≤8 的目标。最容易阅读的 "一种健康 "信息要求的年级水平为九年级(14-15 岁),平均年级水平为 15.5(大学/学院水平)。重要的是,为支持公众更好地理解 "一种健康 "方法而采取的任何干预或缓解措施都不是短暂的,而是具有更持久的传承价值。在为利益相关者准备 "一种健康 "信息时,"一种健康 "信息的作者应考虑使用可读性计算器,以检查其作品的可读性,从而使最终材料符合推荐的可读性参考参数,以支持读者的健康素养和利益相关者导向的知识。
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引用次数: 0
Strengthening Africa's response to Mpox (monkeypox): insights from historical outbreaks and the present global spread 加强非洲对猴痘的应对:从历史疫情和目前的全球传播中得到的启示
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100085
David B. Olawade , Ojima Z. Wada , Sandra Chinaza Fidelis , Oluwafemi S. Oluwole , Chibuike S. Alisi , Nifemi F. Orimabuyaku , Aanuoluwapo Clement David-Olawade
Mpox, formerly known as Monkeypox, is a viral zoonotic disease endemic to Central and West Africa that has posed significant public health challenges since its identification in 1970. Despite decades of experience in managing outbreaks, the 2022–2024 Mpox outbreaks exposed substantial gaps in global preparedness and response, leading the World Health Organization (WHO) to declare a Public Health Emergency of International Concern (PHEIC) in 2022. The resurgence of cases in Europe in 2022 and the more recent emergence of the virulent clade Ⅰb in the Democratic Republic of the Congo (DRC) in 2024 have highlighted a critical need for improved proactive and response strategies to curb the epidemic. This narrative review examines the historical and recent epidemiology of Mpox in Africa and explores the factors that have limited effective management. These include objective influences such as viral mutations, zoonotic transmission patterns, and environmental changes like deforestation, as well as subjective factors, including delayed responses, limited vaccine availability, cessation of smallpox vaccinations, and inequitable access to healthcare. In particular, the review emphasizes the ongoing disparities in global health equity, as wealthier nations have been able to secure vaccines and therapeutics quickly, while endemic regions in Africa continue to struggle with limited resources. The review also discusses how socio-economic and cultural factors, combined with weak public health infrastructure and inadequate surveillance systems, perpetuate cycles of outbreak in vulnerable populations. Furthermore, the emergence of clade Ⅰb in 2024, with its higher virulence and mortality rates among children, particularly in rural areas, underscores the urgency of addressing the evolving epidemiological landscape of Mpox. In response to these challenges, this review recommends strengthening healthcare infrastructure, enhancing surveillance systems, ensuring equitable access to vaccines and treatments, and integrating environmental management into public health strategies. Global collaboration remains essential to provide African countries with the resources and support needed to manage and prevent future outbreaks effectively. Without these measures, the world risks a prolonged public health crisis with far-reaching consequences for both Africa and the global community.
天花(原名猴痘)是一种流行于非洲中部和西部的病毒性人畜共患病,自1970年被确认以来一直对公共卫生构成重大挑战。尽管已有数十年管理疫情的经验,但 2022-2024 年爆发的天花疫情暴露了全球防备和应对工作的巨大差距,导致世界卫生组织(WHO)于 2022 年宣布将其列为国际关注的突发公共卫生事件(PHEIC)。2022年欧洲再次出现病例,最近2024年刚果民主共和国(DRC)又出现了毒力更强的Ⅰb支系,这些都凸显出亟需改进预防和应对策略以遏制疫情。这篇叙述性综述研究了非洲麻风腮的历史和近期流行病学,并探讨了限制有效管理的因素。这些因素包括病毒变异、人畜共患病传播模式、森林砍伐等环境变化等客观影响因素,也包括反应迟缓、疫苗供应有限、停止天花疫苗接种、医疗服务不公平等主观因素。综述特别强调了全球卫生公平性方面持续存在的差距,因为富裕国家能够迅速获得疫苗和治疗方法,而非洲流行地区则继续在有限的资源中挣扎。综述还讨论了社会经济和文化因素如何与薄弱的公共卫生基础设施和不完善的监测系统相结合,使易感人群中的疫情循环往复。此外,Ⅰb 支系将于 2024 年出现,其毒性更强,儿童死亡率更高,尤其是在农村地区。为应对这些挑战,本综述建议加强医疗保健基础设施,强化监测系统,确保公平获得疫苗和治疗,并将环境管理纳入公共卫生战略。全球合作对于为非洲国家提供有效管理和预防未来疫情爆发所需的资源和支持仍然至关重要。如果不采取这些措施,世界将面临长期的公共卫生危机,给非洲和全球社会带来深远影响。
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引用次数: 0
Irrational use of colistin sulfate in poultry and domestic animals in Nepal-an emerging public health crisis 尼泊尔家禽和家畜不合理使用硫酸秋水仙碱--新出现的公共卫生危机
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100063
Sonu Adhikari , Sarita Phuyal , AbdulRahman A. Saied, Asmaa A. Metwally, Krishna Prasad Acharya
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引用次数: 0
One Health governance: theory, practice and ethics 统一健康管理:理论、实践和伦理
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100089
Yinling Zhou , Roger Frutos , Issam Bennis , Mayumi D. Wakimoto
One Health approach is a global public good (GPG) that invites governance to maximize the health of humans, animals, and the environment by shaping interdisciplinary and cross-sectoral collaboration. This paper explores the theoretical foundations, practical applications, and ethical considerations of the One Health governance architecture. At the theoretical level, One Health governance invites systems thinking and involves collaborative efforts among multiple stakeholders, applying across multi-layered scenarios and requires public-private partnership (PPP). This governance architecture transcends traditional anthropocentrism and shifts towards ecocentrism, highlighting the integrity of ecosystems and the deep prevention of diseases. Selected case studies illustrate the implementation of One Health initiatives, such as shared water resources, disease surveillance programmes, and sustainable environmental health interventions, demonstrating the added value of a collaborative efforts across sectors and regions. Ethical considerations are integral to decision-making and actions of One Health governance, with a focus on equity, inclusivity and accountability, providing moral guidelines to prioritize the health of vulnerable populations and ecosystems. Through these efforts, One Health governance is expected to improve public health globally, promote sustainable development, and achieve a harmonious coexistence of human, animal, and environmental health.
一体健康 "方法是一种全球公益(GPG),它要求通过跨学科和跨部门合作,最大限度地提高人类、动物和环境的健康水平。本文探讨了 "一个健康 "治理架构的理论基础、实际应用和伦理考虑。在理论层面,"一体健康 "治理需要系统思维,涉及多个利益相关者之间的协作努力,适用于多层次的情景,并需要公私伙伴关系(PPP)。这种治理架构超越了传统的人类中心主义,转向生态中心主义,强调生态系统的完整性和疾病的深度预防。部分案例研究说明了 "一个健康 "倡议的实施情况,如共享水资源、疾病监测计划和可持续环境健康干预措施,展示了跨部门和跨地区合作努力的附加值。伦理考虑是 "一个健康 "治理的决策和行动不可或缺的一部分,重点是公平、包容性和问责制,为优先考虑弱势人群和生态系统的健康提供道德准则。通过这些努力,"一个健康 "治理有望改善全球公共卫生,促进可持续发展,实现人类、动物和环境健康的和谐共存。
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引用次数: 0
Beyond the desert sands: Decoding the relationship between camels, gut microbiota, and antibiotic resistance through metagenomics 超越沙漠之沙:通过元基因组学破解骆驼、肠道微生物群与抗生素耐药性之间的关系
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100071
Yan Gao , Jiangchao Wu , Jun Zeng , Xiangdong Huo , Kai Lou

Background

Camels, known as the enduring “ships of the desert,” host a complex gut microbiota that plays a crucial role in their survival in extreme environments. However, amidst the fascinating discoveries about the camel gut microbiota, concerns about antibiotic resistance have emerged as a significant global challenge affecting both human and animal populations. Indeed, the continued use of antibiotics in veterinary medicine has led to the widespread emergence of antibiotic-resistant bacteria, which has worsened through gene transfer.

Methodology

This study offers a deeper examination of this pressing issue by harnessing the potent tools of metagenomics to explore the intricate interplay between the camel (Camelus ferus) gut microbiota and antibiotic resistance.

Results

Samples from wild camels yielded varying amounts of raw and clean data, generating scaftigs and open reading frames. The camel fecal microbiome was dominated by bacteria (mainly Bacillota and Bacteriodota), followed by viruses, archaea, and eukaryota. The most abundant genera were the Bacteroides, Ruminococcus, and Clostridium. Functional annotation revealed enriched pathways in metabolism, genetic information processing, and cellular processes, with key pathways involving carbohydrate transport and metabolism, replication, and amino acid transport. CAZy database analysis showed high abundances of glycoside hydrolases and glycosyl transferases. Antibiotic resistance gene (ARG) analysis identified Bacillota and Bacteroidota as the main reservoirs, with vancomycin resistance genes being the most prevalent. This study identified three major resistance mechanisms: antibiotic target alteration, antibiotic target protection, and antibiotic efflux.

Conclusion

These findings contribute to a broader understanding of antibiotic resistance within animal microbiomes and provide a foundation for further investigations of strategies to manage and mitigate antibiotic resistance.

背景骆驼被称为经久不衰的 "沙漠之舟",其肠道微生物群十分复杂,对骆驼在极端环境中的生存起着至关重要的作用。然而,在对骆驼肠道微生物群的精彩发现中,对抗生素耐药性的担忧已成为影响人类和动物种群的重大全球性挑战。本研究利用元基因组学的强大工具,探索骆驼肠道微生物群与抗生素耐药性之间错综复杂的相互作用,从而对这一紧迫问题进行更深入的研究。结果来自野生骆驼的样本产生了不同数量的原始数据和纯净数据,生成了scaftigs和开放阅读框。骆驼粪便微生物组以细菌(主要是芽孢杆菌属和杆菌属)为主,其次是病毒、古细菌和真核生物。数量最多的菌属是乳杆菌属、反刍球菌属和梭状芽孢杆菌属。功能注释显示,新陈代谢、遗传信息处理和细胞过程中的通路丰富,关键通路涉及碳水化合物转运和新陈代谢、复制和氨基酸转运。CAZy 数据库分析显示糖苷水解酶和糖基转移酶的丰度较高。抗生素耐药基因(ARG)分析表明,芽孢杆菌和类杆菌是主要的耐药基因库,其中万古霉素耐药基因最为普遍。这项研究确定了三种主要的耐药机制:抗生素靶标改变、抗生素靶标保护和抗生素外流。 结论:这些发现有助于人们更广泛地了解动物微生物组中的抗生素耐药性,并为进一步研究管理和减轻抗生素耐药性的策略奠定了基础。
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引用次数: 0
Extended spectrum cephalosporin (ESC) resistant Escherichia coli: Trends and seasonality in the Netherlands from 2014 to 2022 耐广谱头孢菌素(ESC)大肠埃希菌:2014 年至 2022 年荷兰的趋势和季节性变化
Pub Date : 2024-01-01 DOI: 10.1016/j.soh.2024.100083
Michael S.M. Brouwer , Eduardo de Freitas Costa , Anita Dame-Korevaar , Adam P. Roberts , Kees T. Veldman

Background

Antimicrobial resistance (AMR) in livestock and the environment likely contribute to the prevalence of AMR in humans with potential detrimental effects on human health. As such, annual mandatory monitoring of AMR in livestock occurs within the European Union (EU), according to harmonised methods. Extended-spectrum cephalosporins-resistant (ESC-resistant) Escherichia coli, including extended-spectrum β-lactamases (ESBL), AmpC β-lactamases (AmpC) and carbapenemase producing E. coli, are considered of particular importance and are therefore included in the monitoring program.

Methods

Using results from the annual monitoring of ESC-resistant E. coli from 20142022, trends in prevalence per animal sector were determined over the complete time period, as well as potential seasonal effects.

Results

During these nine years, significant changes were observed in the prevalence of ESC-resistant E. coli, in broilers, dairy cattle and veal calves, while no changes in prevalence were seen in slaughter pigs. Furthermore, the prevalence of ESC-resistant E. coli is positively correlated with warmer seasons (summer and autumn) for both dairy cattle and veal calves, while no associations were found for broilers and slaughter pigs. While temperature itself may play a role in the prevalence of ESC-resistant E. coli, other factors affecting the selective landscape, such as antibiotic usage, will also play a role.

Conclusion

A combined analysis of antimicrobial usage and prevalence of ESC-resistant E. coli through the year, both in livestock and human samples, would be an interesting follow-up of this study.
背景牲畜和环境中的抗菌素耐药性(AMR)很可能会导致人类中抗菌素耐药性的流行,从而对人类健康造成潜在的不利影响。因此,欧盟(EU)每年都会根据统一的方法对家畜中的 AMR 进行强制性监测。耐扩展谱头孢菌素(ESC)大肠埃希菌,包括耐扩展谱β-内酰胺酶(ESBL)、AmpC β-内酰胺酶(AmpC)和碳青霉烯酶大肠埃希菌,被认为具有特别重要的意义,因此被纳入监测计划。结果在这九年中,肉鸡、奶牛和小牛的耐ESC大肠杆菌流行率发生了显著变化,而屠宰猪的流行率没有变化。此外,奶牛和小牛的耐ESC大肠杆菌流行率与温暖的季节(夏季和秋季)呈正相关,而肉鸡和屠宰猪的流行率则没有相关性。虽然温度本身可能会对耐 ESC 大肠杆菌的流行产生影响,但影响选择性景观的其他因素(如抗生素的使用)也会产生影响。
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引用次数: 0
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Science in One Health
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