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Transformative CRISPR-Cas9 Technologies: A Review of Molecular Mechanisms, Precision Editing Techniques, and Clinical Progress in Sickle Cell Disease. 转化CRISPR-Cas9技术:镰状细胞病的分子机制、精确编辑技术和临床进展综述
IF 2.1 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-03-05 DOI: 10.2174/0113892002356293250225094826
Komal, Prabhjot Kaur, Nidhi Arora, Jyotiram A Sawale, Amandeep Singh

Sickle cell disease (SCD) is a hereditary blood disorder resulting from the production of distorted hemoglobin molecules that cause red blood cells to adopt a sickle or crescent-like shape. This disease affects millions of people, particularly those of African, Mediterranean, Middle Eastern, or South Asian descent. In recent years, however, advancements in the CRISPR-Cas9 gene-editing systems have surged. CRISPR stands for clustered regularly interspaced short palindromic repeats, referring to a specific organization of short, partially repeated DNA sequences in prokaryotic genomes. The CRISPR-Cas9 technique is based on the type II CRISPR system of bacteria and involves the Cas9 nuclease, which is targeted to a particular genome section with the help of single-guide RNA. Initially used for random mutations and small sequence alterations, genome editing methods have advanced to achieve large-scale DNA segment manipulation. The BE and PE-- type CRISPR-Cas9 genome editing variants provide new therapeutic options for genetic disorders, improving patients' prognosis. Curative gene editing using CRISPR-Cas9 technology to correct HBB gene mutations that cause SCD represents a revolutionary therapeutic development. These advances bring new hope to patients with previously untreatable diseases, potentially offering a future where genetic disorders can be addressed at their roots. A major objective of CRISPR technology is to enhance its precision and speed, both critical for effective gene editing. This review focuses on molecular mechanisms of CRISPR-Cas9 technology, CRISPR-- Cas9-based approaches for HBB gene modification, clinical trials, patients with sickle cell disease, and advances in CRISPR technology for sickle cell disease.

镰状细胞病(Sickle cell disease,SCD)是一种遗传性血液疾病,其原因是血红蛋白分子产生扭曲,导致红细胞呈镰状或新月形。这种疾病影响着数百万人,尤其是非洲、地中海、中东或南亚后裔。然而,近年来,CRISPR-Cas9 基因编辑系统的发展突飞猛进。CRISPR是簇状规则间隔短回文重复序列的缩写,指的是原核生物基因组中短的、部分重复的DNA序列的一种特殊组织形式。CRISPR-Cas9技术基于细菌的II型CRISPR系统,涉及Cas9核酸酶,它在单导RNA的帮助下靶向特定的基因组部分。基因组编辑方法最初用于随机突变和小序列改变,现在已发展到可以实现大规模的DNA片段操作。BE和PE--型CRISPR-Cas9基因组编辑变体为遗传疾病提供了新的治疗选择,改善了患者的预后。利用CRISPR-Cas9技术进行治疗性基因编辑以纠正导致SCD的HBB基因突变是一项革命性的治疗进展。这些进展为以前无法治疗的疾病患者带来了新的希望,有可能在未来从根本上解决遗传性疾病问题。CRISPR 技术的一个主要目标是提高其精确度和速度,这两点对于有效的基因编辑至关重要。这篇综述主要介绍了CRISPR-Cas9技术的分子机制、基于CRISPR-Cas9的HBB基因修饰方法、临床试验、镰状细胞病患者以及CRISPR技术在镰状细胞病方面的进展。
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引用次数: 0
In vitro and In vivo Drug Metabolism Analysis of BPI-460372 - A Covalent TEAD1/3/4 Inhibitor. BPI-460372 - A共价TEAD1/3/4抑制剂的体内外药物代谢分析
IF 1.8 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-11 DOI: 10.2174/0113892002351556250123105344
Xiaoyun Liu, Dafang Zhong, Chong Zhuang Tang, Xiaofeng Xu, Hong Lan, Xingxing Diao

Background: BPI-460372 is an orally available, covalent, irreversible small molecule inhibitor of the transcriptional enhanced associate domain (TEAD) 1/3/4, which is currently in clinical development for the treatment of cancers with Hippo pathway alterations.

Objective: This study aimed to determine the cytochrome P450 (CYP) phenotyping, metabolic stability, and in vitro and in vivo metabolic profile of BPI-460372.

Methods: The CYP phenotyping and metabolic stability were assessed by measuring the depletion of substrate. The metabolic profile in hepatocytes and rat and dog plasma was analyzed using ultra-high-performance liquid chromatography combined with Orbitrap tandem mass spectrometry (UHPLC-Orbitrap-HRMS).

Results: BPI-460372 was mainly metabolized by CYP2D6, CYP3A4, and CYP1A2. BPI-460372 exhibited low clearance in human, monkey, and rat hepatocytes, while moderate clearance in dog and mouse hepatocytes. A total of 10 metabolites were identified in five species of hepatocytes, and no human-unique metabolite was detected. In rat plasma and dog plasma, the primary metabolites were M407 (BPI-460430) and M423 (BPI-460456), respectively. The two metabolites were quantitatively determined in rat and dog plasma in pharmacokinetic and toxicological studies. The major metabolic site was 2-fluoro-acrylamide, and major metabolic pathways in hepatocytes, and rat and dog plasma involved oxidative defluorination, hydration, glutathione (GSH) conjugation, hydrolysis, cysteine conjugation, and N-acetyl cysteine conjugation. β-lyase pathway contributed to the metabolism of BPI-460372 in rats to a certain degree.

Conclusion: This study elucidated the metabolism of BPI-460372 and provided a basis for pharmacokinetic and toxicological species selection, human pharmacokinetics prediction, and assessment of clinical co-administration limitations and possible metabolic pathways in humans.

背景:BPI-460372是一种口服、共价、不可逆的转录增强相关结构域(TEAD) 1/3/4的小分子抑制剂,目前正处于临床开发阶段,用于治疗Hippo通路改变的癌症。目的:研究BPI-460372的细胞色素P450 (CYP)表型、代谢稳定性及体内外代谢谱。方法:通过测定底物损耗来评估CYP表型和代谢稳定性。采用超高效液相色谱-Orbitrap串联质谱法(UHPLC-Orbitrap-HRMS)分析了肝细胞、大鼠和狗血浆中的代谢谱。结果:BPI-460372主要被CYP2D6、CYP3A4和CYP1A2代谢。BPI-460372在人、猴和大鼠肝细胞中的清除率较低,而在狗和小鼠肝细胞中的清除率中等。在5种肝细胞中共鉴定出10种代谢物,未检测到人类特有的代谢物。在大鼠血浆和狗血浆中,主要代谢物分别为M407 (BPI-460430)和M423 (BPI-460456)。在大鼠和狗的血浆中定量测定了这两种代谢物的药代动力学和毒理学研究。主要代谢位点为2-氟丙烯酰胺,肝细胞、大鼠和狗血浆中的主要代谢途径包括氧化脱氟、水化、谷胱甘肽(GSH)偶联、水解、半胱氨酸偶联和n -乙酰半胱氨酸偶联。β裂解酶途径对BPI-460372在大鼠体内的代谢有一定的促进作用。结论:本研究阐明了BPI-460372的代谢机制,为BPI-460372的药代动力学和毒理学物种选择、人体内药代动力学预测、临床共给药局限性评估及可能的人体内代谢途径提供了依据。
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引用次数: 0
A Review on Drug-Metabolizing Enzymes, Transporters, and Gut Microbiota on Pharmacokinetics in High-Altitude Environment. 药物代谢酶、转运体和肠道微生物群对高海拔环境下药物代谢动力学的影响综述。
IF 2.1 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-11 DOI: 10.2174/0113892002356402250130075811
Fangfang Qiu, Yuemei Sun, Wenbin Li, Rong Wang

The most significant feature of the high-altitude environment is hypoxia, which affects the activity and expression of drug-metabolizing enzymes and transporters, leading to changes in pharmacokinetic parameters. Notably, gut microbiota is a hidden organ in the body. High-altitude hypoxia will change the composition and quantity of gut microbiota, affect drug metabolism, and change the bioavailability of drugs. This will provide a new perspective on changes in pharmacokinetics at high-altitude. Most studies have revealed that for drugs with low bioavailability and high clearance, the dosage may be increased accordingly. Conversely, the dosage may be reduced to achieve individualized medication. Therefore, this article reviews the changes and mechanisms of drug-metabolizing enzymes, transporters, and gut microbiota in a high-altitude environment and explains the impact of their changes on pharmacokinetics, aiming to provide theories and bases for the adjustment of drug dosage and the rational use of drugs in the clinic under high-altitude environment.

高海拔环境最显著的特征是低氧,低氧会影响药物代谢酶和转运体的活性和表达,导致药代动力学参数发生变化。值得注意的是,肠道微生物群是一个隐藏在体内的器官。高原缺氧会改变肠道菌群的组成和数量,影响药物代谢,改变药物的生物利用度。这将为研究高原药代动力学变化提供新的视角。大多数研究表明,对于低生物利用度和高清除率的药物,可以相应增加剂量。相反,可以减少剂量以实现个体化用药。因此,本文就高海拔环境下药物代谢酶、转运体和肠道菌群的变化及其机制进行综述,并解释其变化对药代动力学的影响,旨在为临床在高海拔环境下调整药物剂量和合理用药提供理论和依据。
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引用次数: 0
Potential Alteration of Rifampicin's Bioavailability by Phyllanthus niruri Supplementation in Tuberculosis Therapy. 补充余甘子治疗结核病对利福平生物利用度的潜在影响。
IF 2.1 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-06 DOI: 10.2174/0113892002361205250123101231
Mirhansyah Ardana, Marlyn Dian Laksitorini, Endang Lukitaningsih, Agung Endro Nugroho

Rifampicin is essential for treating TB. The high incidence of resistance to this drug requires efforts to increase the effectiveness of TB therapy. Immunomodulator supplementation is one effort to overcome this problem. Phyllanthus niruri has an immunomodulating effect, which has been proven to influence the clinical improvement of the immunological profile. However, the effect of this plant on rifampicin's bioavailability should be reviewed to determine potential changes that may affect its antibacterial performance. Several stud-ies have shown an increase in the bioavailability of rifampicin when administered with extracts and active isolates of Carum carvi, Cuminum cyminum, Piper nigrum, and Moringa oleifera through inhibition of the P-gp efflux function in the absorption phase. On the other hand, the decrease occurred in coadministration with Garcinia cola, which activated PXR action and subsequently changed P-gp regulation. Administration of Al-lium sativum and Zingiber officinale extracts did not show significant alteration in bioavailability due to the stimulation of several mechanisms with opposite outputs by each secondary metabolite. In the case of P. niruri supplementation, the potential for a rise in bioavailability could occur due to synergistic effects inhibiting the performance of P-gp, AADAC, and OATP1B. However, the stimulation of PXR and PPARα may reduce or eliminate these effects. Finally, considering that there are so many specific secondary metabolites in P. niruri whose effects on the performance of these functional proteins have not been exposed, in vivo studies are needed to confirm the interactions within complex biological systems.

利福平对治疗结核病至关重要。对这种药物的高耐药性要求努力提高结核病治疗的有效性。补充免疫调节剂是克服这一问题的一种努力。余甘子具有免疫调节作用,已被证明对临床免疫状况的改善有影响。然而,应该审查这种植物对利福平生物利用度的影响,以确定可能影响其抗菌性能的潜在变化。一些研究表明,通过抑制吸收期P-gp外排功能,与Carum carvi、Cuminum cyminum、Piper nigrum和辣木(Moringa oleifera)的提取物和活性分离物一起给药,利福平的生物利用度增加。另一方面,与藤黄可乐共给药时,PXR活性降低,随后改变了P-gp的调节。给药铝和生姜提取物没有显示出明显的生物利用度变化,这是由于几种机制的刺激,每种次生代谢物的输出相反。在补充P. niruri的情况下,由于协同效应抑制P-gp、AADAC和OATP1B的性能,可能会提高生物利用度。然而,PXR和PPARα的刺激可能会减少或消除这些影响。最后,考虑到P. niruri中有许多特定的次级代谢物对这些功能蛋白的性能的影响尚未暴露,需要在体内研究来确认复杂生物系统中的相互作用。
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引用次数: 0
A Comprehensive Review on the Pharmacokinetics and Bioanalysis of Piperaquine. 哌喹的药代动力学及生物分析研究综述。
IF 1.8 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.2174/0113892002374755250613064601
Yuewu Xie, Wenting Zhang, Ziqing Rui, Yuan Dai, Jie Xing, Jun Han

Piperaquine is an important partner drug in artemisinin-based combination therapy, which is highly effective for the treatment of uncomplicated malaria. Several studies have been reported on its pharmacokinetic profiles in different populations, as well as its bioanalytical methods. Piperaquine shows a very large volume of distribution (up to 877 l/kg), a low oral clearance (0.3-1.9 l/h/kg), and an extremely long terminal elimination half-life (up to 30 days) in both healthy volunteers and malarial patients. Piperaquine metabolism is primarily mediated by CYP3A4, and to a lesser extent by CYP2D6 and CYP2C8. The oral bioavailability of piperaquine can be influenced by the consumption of high-fat food. The pharmacokinetics of piperaquine is affected by body weight, age, and pregnancy. Piperaquine has limited clinically relevant interactions with most commonly prescribed drugs. Plasma has been the most commonly studied matrix, and the most used pretreatment techniques involve protein precipitation. HPLC-UV and HPLC-MS/MS are usually used for the quantification of piperaquine in biological samples with researchers seeking a balance between affordability and sensitivity. This review summarizes the analytical assays used for the quantification of piperaquine in biological samples and its pharmacokinetic properties, with particular attention to information on food-drug interactions, drug-drug interactions, and pharmacokinetic characteristics in special populations, including pregnant women and children.

哌喹是以青蒿素为基础的联合治疗中重要的伙伴药物,对治疗无并发症的疟疾非常有效。对其在不同人群中的药代动力学特征及其生物分析方法进行了一些研究报道。在健康志愿者和疟疾患者中,哌喹的分布量非常大(高达877 l/kg),口服清除率很低(0.3-1.9 l/h/kg),终末消除半衰期极长(长达30天)。哌喹代谢主要由CYP3A4介导,其次是CYP2D6和CYP2C8。口服哌喹的生物利用度会受到食用高脂肪食物的影响。哌喹的药代动力学受体重、年龄和妊娠的影响。哌喹与大多数常用处方药的临床相关相互作用有限。血浆是研究最广泛的基质,最常用的预处理技术包括蛋白质沉淀。HPLC-UV和HPLC-MS/MS通常用于生物样品中哌喹的定量,研究人员寻求在可负担性和灵敏度之间取得平衡。本文综述了用于生物样品中哌喹的定量分析方法及其药代动力学特性,特别关注食品-药物相互作用、药物-药物相互作用和特殊人群(包括孕妇和儿童)的药代动力学特征。
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引用次数: 0
A Data Mining Approach on Polypharmacy and Drug-drug Interactions of Common Diabetes Medications. 常见糖尿病药物多药及药物相互作用的数据挖掘方法。
IF 1.8 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.2174/0113892002358291250401190533
Jyotsana Dwivedi, Shubhi Kaushal, Pranay Wal, Darshan Jogi Chandrashekhar, Ankita Sharma, Deepak Nathiya, Amin Gasmi

Background: When managing diabetes, polypharmacy the use of several drugs simultaneously to obtain the best possible glucose control is typical. Drug-drug interactions (DDIs), which can result in side effects and reduced treatment efficacy, have increased.

Objectives: This study evaluated the data mining approach of polypharmacy-based drug-drug interactions for common diabetes medication.

Methods: To identify publications that met the inclusion criteria, several scientific reviews and research papers were searched, including Scopus, Web of Science, Google Scholar, PubMed, Science Direct, Springer Link, and NCBI, using keywords such as diabetes, drug-drug interaction, polypharmacy, data mining, and herbal interaction.

Results: Many important drug-drug interactions among popular anti-diabetic drugs have been identified using data mining. Using iodinated contrast media and metformin together increased the risk of lactic acidosis, and using NSAIDs and sulfonylureas simultaneously increased the risk of hypoglycemia. A higher incidence of DDIs was found in an analysis of elderly individuals and those with several comorbidities. Predictive models have demonstrated high sensitivity and accuracy in detecting possible DDIs from patient and drug data.

Conclusion: Finding and evaluating DDIs in polypharmacy related to diabetes care are made possible through data mining. These results could potentially improve patient safety by influencing more individualized and cautious prescription techniques. The improvement of these methods and their application in standard clinical practice should be the main goal of future studies.

背景:在治疗糖尿病时,多种药物同时使用以获得最佳的血糖控制是典型的。药物-药物相互作用(ddi)可能导致副作用和降低治疗效果,已经增加。目的:评价基于多药药物相互作用的数据挖掘方法在常见糖尿病药物治疗中的应用。方法:检索Scopus、Web of Science、谷歌Scholar、PubMed、Science Direct、施普林格Link、NCBI等多篇科学综述和研究论文,检索关键词为糖尿病、药物相互作用、多药、数据挖掘、草药相互作用等,以确定符合纳入标准的出版物。结果:常用抗糖尿病药物之间的许多重要的药物-药物相互作用已被识别。同时使用碘造影剂和二甲双胍会增加乳酸酸中毒的风险,同时使用非甾体抗炎药和磺脲类药物会增加低血糖的风险。在对老年人和有几种合并症的人群的分析中发现,ddi的发病率较高。预测模型在从患者和药物数据中检测可能的ddi方面显示出很高的灵敏度和准确性。结论:通过数据挖掘,可以发现和评价与糖尿病护理相关的多药DDIs。这些结果可能通过影响更个性化和谨慎的处方技术来潜在地提高患者的安全性。这些方法的改进及其在标准临床实践中的应用应是未来研究的主要目标。
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引用次数: 0
Natural Compounds as Potential Therapeutics for Pancreatic Cancer: A Narrative Review. 天然化合物作为胰腺癌的潜在治疗药物:综述。
IF 1.8 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.2174/0113892002393013250812093213
Xing-Da Lin, Tian Li, Rui-Xia Du, Gui-Chen Li, Zhe Liu

Pancreatic cancer is a highly lethal malignancy with a low 5-year survival rate. This review focuses on natural compounds as potential therapeutics for it. Different types of natural compounds, such as polyphenols, saponins, and alkaloids, have shown anti-pancreatic cancer effects, including inhibiting tumor cell growth, inducing apoptosis, and preventing angiogenesis. They also have indirect impacts on pancreatic cancer through influencing the gut microbiota, glucose and lipid metabolism, and the endocrine system. Additionally, Chinese herbal medicines containing these compounds show promise in clinical applications. However, challenges such as target identification and low bioavailability persist. Future research trends involve interdisciplinary collaboration and the use of advanced technologies to overcome these issues.

胰腺癌是一种高致死率的恶性肿瘤,5年生存率低。本文就天然化合物作为潜在的治疗药物进行综述。不同类型的天然化合物,如多酚、皂苷和生物碱,已经显示出抗胰腺癌的作用,包括抑制肿瘤细胞生长、诱导细胞凋亡和防止血管生成。它们还通过影响肠道微生物群、糖脂代谢和内分泌系统对胰腺癌产生间接影响。此外,含有这些化合物的中草药在临床应用中显示出前景。然而,诸如目标识别和低生物利用度等挑战仍然存在。未来的研究趋势包括跨学科合作和使用先进技术来克服这些问题。
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引用次数: 0
Development of Transdermal Drug Delivery Approaches to Combat Diabetes: An Update. 抗糖尿病经皮给药途径的发展:最新进展。
IF 1.8 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.2174/0113892002382343250917074945
Priya Singhal, Rupa Mazumder, Anjna Rani, Abhijit Debnath

Background: Diabetes mellitus, a widespread and chronic metabolic condition, creates significant challenges for healthcare systems due to complications from inadequate glycemic control, patient non-compliance, and the invasive nature of traditional treatments, including oral medications and insulin injections, which often lead to discomfort, variability in blood glucose levels, and low adherence.

Objective: To explore the potential of Transdermal Drug Delivery Systems (TDDS) as a non-invasive and effective alternative for diabetes management, highlighting their advantages, recent technological advancements, and associated challenges.

Methods: This review examines the role of TDDS in diabetes treatment, with an emphasis on recent innovations, including microneedles, hydrogels, and sonophoresis. The study also discusses the benefits of TDDS in maintaining stable plasma drug levels, reducing first-pass metabolism, and integrating with continuous glucose monitoring systems.

Results: Emerging TDDS technologies improve drug permeability, enhance bioavailability, and offer sustained drug release, potentially addressing limitations of conventional delivery methods. However, barriers such as skin permeability, high manufacturing costs, and patient variability remain significant challenges.

Discussion: Multi-drug patches and microneedle-based systems represent innovative approaches that enhance therapeutic efficacy and patient compliance by enabling painless, targeted, and combination drug delivery. With support from nanotechnology and pharmacogenomics, these platforms are evolving toward personalized medicine, offering optimized dosing and reduced side effects.

Conclusion: TDDS presents a promising alternative for diabetes management by improving patient adherence, ensuring controlled drug release, and reducing discomfort associated with injections. While further research is required to overcome existing limitations, advancements in biomaterials and personalized medicine approaches hold the potential to optimize TDDS for widespread clinical application. This research aims to summarize the advancements and address existing challenges for future development.

背景:糖尿病是一种广泛存在的慢性代谢疾病,由于血糖控制不足、患者不遵医嘱以及传统治疗方法(包括口服药物和胰岛素注射)的侵入性等并发症,通常会导致不适、血糖水平变化和依从性低,给医疗保健系统带来了重大挑战。目的:探讨经皮给药系统(TDDS)作为一种非侵入性、有效的糖尿病治疗替代方案的潜力,重点介绍其优势、最新技术进展和相关挑战。方法:本文综述了TDDS在糖尿病治疗中的作用,重点介绍了最近的创新,包括微针、水凝胶和声泳术。该研究还讨论了TDDS在维持稳定的血浆药物水平、减少首过代谢以及与连续血糖监测系统相结合方面的益处。结果:新兴的TDDS技术提高了药物的渗透性,提高了生物利用度,并提供了持续的药物释放,潜在地解决了传统给药方法的局限性。然而,皮肤渗透性、高制造成本和患者差异等障碍仍然是重大挑战。讨论:多药贴片和基于微针的系统代表了通过无痛、靶向和联合给药来提高治疗效果和患者依从性的创新方法。在纳米技术和药物基因组学的支持下,这些平台正在向个性化医疗发展,提供优化的剂量和减少的副作用。结论:TDDS通过提高患者依从性,确保药物释放可控,减少注射带来的不适,为糖尿病治疗提供了一种有希望的替代方案。虽然需要进一步的研究来克服现有的局限性,但生物材料和个性化医疗方法的进步有可能优化TDDS,使其广泛应用于临床。本研究旨在总结研究进展,并解决未来发展面临的挑战。
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引用次数: 0
Mechanism of Tetrandrine in Ameliorating Hypoxic Pulmonary Hypertension Vascular Remodeling through Transcriptomics and Metabolomics. 粉防己碱通过转录组学和代谢组学改善缺氧肺动脉高压血管重构的机制。
IF 1.8 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.2174/0113892002393801250812063417
Xiaowei Gong, Feitian Min, Junli Guo, Ziping Zhang, Xin Liu, Wei Guo, Yaguang Wu, Hanzhou Li, Xixing Fang, Yadong Yuan, Yanling Sheng, Huantian Cui

Background: Tetrandrine (TET) demonstrates therapeutic potential for hypoxic pulmonary hypertension (HPH); however, its precise pharmacological mechanisms remain unclear. In this study, we aimed to investigate the effects of TET on pulmonary vascular remodeling (PVR) in HPH and elucidate the molecular pathways through which TET ameliorates HPH.

Methods: We established a rat model of HPH and evaluated the therapeutic effects of TET by measuring hemodynamic parameters, assessing right ventricular hypertrophy, and analyzing pathological changes in lung tissue. To explore the molecular mechanisms, we carried out comprehensive analyses using transcriptome and untargeted metabolomics technologies to examine the impact of TET on gene expression and metabolite profiles in the lung tissue of HPH rats. Using data from these multiomics analyses, we performed biochemical assays, immunofluorescence staining, and Western blotting to validate the effects of TET on vasoconstriction and angiogenesis-related factors. These experiments provide further evidence of the anti-HPH and anti-PVR properties of TET.

Results: TET intervention significantly reduced hemodynamic parameters, including mean pulmonary arterial pressure (mPAP) and right ventricular systolic pressure (RVSP), as well as right ventricular hypertrophy indices, such as the right ventricular hypertrophy index (RVHI) and right ventricle-to-body weight ratio (RV/BW), in HPH rats. TET inhibited smooth muscle cell proliferation and alleviated pathological changes in lung tissue. Transcriptome and metabolome analyses revealed that genes affected by TET intervention were enriched in pathways related to PVR, including those involved in endothelial and smooth muscle cell proliferation, angiogenesis, and blood vessel morphogenesis. Metabolites were predominantly associated with the arachidonic acid (AA) metabolism pathway. Differentially expressed genes included Cyp4a1, Cyp4a3, Cyp2u1, and Alox15. Validation experiments demonstrated that TET upregulated ALOX15 protein expression and downregulated CYP4A and CYP2U1 proteins, modulating levels of arachidonate metabolites 20-HETE and 15(S)-HPETE. We further observed that TET reduced the levels of PVR markers, including endothelin-1 (ET-1) secretion, while increasing nitric oxide (NO) release. TET also decreased the expression of cell proliferation markers PCNA and Ki-67 and elevated the endothelial marker CD31. Moreover, TET intervention suppressed angiogenic and vasoconstrictive factors, such as MMP-9, TGF-β1, IGF2, and PDGF-B, while enhancing levels of FGF9 and NOS3.

Conclusion: Our findings highlight the protective effects of TET on lung tissue in HPH mediated through the regulation of 15(S)-HPETE and 20-HETE within the arachidonic acid metabolism pathway. This regulation inhibits pulmonary angiogenesis and vasoconstriction, ultimately improving PVR in HPH.

背景:粉防己碱(TET)显示出治疗低氧性肺动脉高压(HPH)的潜力;然而,其确切的药理机制尚不清楚。在本研究中,我们旨在探讨TET对HPH肺血管重塑(PVR)的影响,并阐明TET改善HPH的分子途径。方法:建立HPH大鼠模型,通过测量血流动力学参数、评估右心室肥厚、分析肺组织病理变化来评价TET的治疗效果。为了探索其分子机制,我们利用转录组学和非靶向代谢组学技术进行了综合分析,研究TET对HPH大鼠肺组织中基因表达和代谢物谱的影响。利用这些多组学分析的数据,我们进行了生化分析、免疫荧光染色和Western blotting来验证TET对血管收缩和血管生成相关因素的影响。这些实验进一步证明了TET的抗hph和抗pvr特性。结果:TET干预可显著降低HPH大鼠的血流动力学参数,包括平均肺动脉压(mPAP)和右心室收缩压(RVSP),以及右心室肥厚指数(RVHI)和右心室与体重比(RV/BW)。TET抑制肺组织平滑肌细胞增殖,减轻肺组织病理改变。转录组学和代谢组学分析显示,受TET干预影响的基因在与PVR相关的途径中富集,包括参与内皮细胞和平滑肌细胞增殖、血管生成和血管形态发生的基因。代谢产物主要与花生四烯酸(AA)代谢途径相关。差异表达基因包括Cyp4a1、Cyp4a3、Cyp2u1和Alox15。验证实验表明TET上调ALOX15蛋白表达,下调CYP4A和CYP2U1蛋白表达,调节花生四烯酸代谢物20-HETE和15(S)-HPETE水平。我们进一步观察到TET降低了PVR标志物的水平,包括内皮素-1 (ET-1)的分泌,同时增加了一氧化氮(NO)的释放。TEt还降低了细胞增殖标志物PCNA和Ki-67的表达,升高了内皮标志物CD31的表达。TET干预抑制血管生成和血管收缩因子,如MMP-9、TGF-β1、IGF2和PDGF-B,同时提高FGF9和NOS3水平。结论:我们的研究结果表明TET通过调节花生四烯酸代谢途径中的15(S)-HPETE和20-HETE介导的HPH对肺组织的保护作用。这种调节抑制肺血管生成和血管收缩,最终改善HPH患者的PVR。
{"title":"Mechanism of Tetrandrine in Ameliorating Hypoxic Pulmonary Hypertension Vascular Remodeling through Transcriptomics and Metabolomics.","authors":"Xiaowei Gong, Feitian Min, Junli Guo, Ziping Zhang, Xin Liu, Wei Guo, Yaguang Wu, Hanzhou Li, Xixing Fang, Yadong Yuan, Yanling Sheng, Huantian Cui","doi":"10.2174/0113892002393801250812063417","DOIUrl":"10.2174/0113892002393801250812063417","url":null,"abstract":"<p><strong>Background: </strong>Tetrandrine (TET) demonstrates therapeutic potential for hypoxic pulmonary hypertension (HPH); however, its precise pharmacological mechanisms remain unclear. In this study, we aimed to investigate the effects of TET on pulmonary vascular remodeling (PVR) in HPH and elucidate the molecular pathways through which TET ameliorates HPH.</p><p><strong>Methods: </strong>We established a rat model of HPH and evaluated the therapeutic effects of TET by measuring hemodynamic parameters, assessing right ventricular hypertrophy, and analyzing pathological changes in lung tissue. To explore the molecular mechanisms, we carried out comprehensive analyses using transcriptome and untargeted metabolomics technologies to examine the impact of TET on gene expression and metabolite profiles in the lung tissue of HPH rats. Using data from these multiomics analyses, we performed biochemical assays, immunofluorescence staining, and Western blotting to validate the effects of TET on vasoconstriction and angiogenesis-related factors. These experiments provide further evidence of the anti-HPH and anti-PVR properties of TET.</p><p><strong>Results: </strong>TET intervention significantly reduced hemodynamic parameters, including mean pulmonary arterial pressure (mPAP) and right ventricular systolic pressure (RVSP), as well as right ventricular hypertrophy indices, such as the right ventricular hypertrophy index (RVHI) and right ventricle-to-body weight ratio (RV/BW), in HPH rats. TET inhibited smooth muscle cell proliferation and alleviated pathological changes in lung tissue. Transcriptome and metabolome analyses revealed that genes affected by TET intervention were enriched in pathways related to PVR, including those involved in endothelial and smooth muscle cell proliferation, angiogenesis, and blood vessel morphogenesis. Metabolites were predominantly associated with the arachidonic acid (AA) metabolism pathway. Differentially expressed genes included <i>Cyp4a1, Cyp4a3, Cyp2u1</i>, and <i>Alox15</i>. Validation experiments demonstrated that TET upregulated ALOX15 protein expression and downregulated CYP4A and CYP2U1 proteins, modulating levels of arachidonate metabolites 20-HETE and 15(S)-HPETE. We further observed that TET reduced the levels of PVR markers, including endothelin-1 (ET-1) secretion, while increasing nitric oxide (NO) release. TET also decreased the expression of cell proliferation markers PCNA and Ki-67 and elevated the endothelial marker CD31. Moreover, TET intervention suppressed angiogenic and vasoconstrictive factors, such as MMP-9, TGF-β1, IGF2, and PDGF-B, while enhancing levels of FGF9 and NOS3.</p><p><strong>Conclusion: </strong>Our findings highlight the protective effects of TET on lung tissue in HPH mediated through the regulation of 15(S)-HPETE and 20-HETE within the arachidonic acid metabolism pathway. This regulation inhibits pulmonary angiogenesis and vasoconstriction, ultimately improving PVR in HPH.</p>","PeriodicalId":10770,"journal":{"name":"Current drug metabolism","volume":" ","pages":"268-280"},"PeriodicalIF":1.8,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12728530/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145014093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prediction of Pharmacokinetics of Valeric Acid: Alternative Tool to Minimize Animal Studies. 戊酸药代动力学预测:减少动物实验的替代工具。
IF 1.8 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 DOI: 10.2174/0113892002352975250310045810
Bindu Kumari, Dhananjay Kumar Singh, Ravi Bhushan Singh, Gireesh Kumar Singh

Background: The use of computer-aided toxicity and Pharmacokinetic (PK) prediction studies are of significant interest to pharmaceutical industries as a complementary approach to traditional experimental methods in predicting potential drug candidates.

Methods: In the present study, in-silico pharmacokinetic properties (ADME), drug-likeness, and toxicity profiles of valeric acid were examined using SwissADME and ADMETlab web tools.

Results: The drug-likeness prediction results revealed that valeric acid adheres to the Lipinski rule, Pfizer rule, and GlaxoSmithKline (GSK) rule. From a pharmacokinetic perspective, valeric acid is anticipated to have the best absorption profile including cell permeability and bioavailability. Plasma Protein Binding (PPB) and Blood-Brain Barrier (BBB) permeability may have a positive effect on Central Nervous System modulating (CNS). There is a minimal chance of it being a substrate for cytochrome P2D6 (CYP). Except for a "very slight risk" for eye corrosion and eye irritation, none of the well-known toxicities in valeric acid were anticipated, which was compatible with wet-lab data. The molecule possesses no environmental hazard as analyzed with common indicators such as bio-concentration factor and LC50 for fathead minnow and daphnia magna. The toxicity parameters identified valeric acid as nontoxic to androgen receptors, antioxidant response element, mitochondrial membrane receptor, heat shock element, and tumor suppressor protein (p53), except Peroxisome Proliferator-Activated Receptor- gamma (PPAR-γ) was found to be medium toxicity. However, no toxicophores were found out of seven parameters.

Conclusion: Overall, the ADMETLab evaluated that valeric acid has favorable pharmacokinetic and drug-likeness profiles, making it a promising drug candidate for new drug development.

背景:使用计算机辅助毒性和药代动力学(PK)预测研究作为传统实验方法预测潜在候选药物的补充方法,对制药行业具有重要意义。方法:采用SwissADME和ADMETlab网络工具,对戊酸的计算机药代动力学特性(ADME)、药物相似性和毒性进行了检测。结果:药物相似性预测结果显示,戊酸符合利平斯基规则、辉瑞规则和葛兰素史克规则。从药代动力学的角度来看,戊酸预计具有最佳的吸收特征,包括细胞渗透性和生物利用度。血浆蛋白结合(PPB)和血脑屏障(BBB)通透性可能对中枢神经系统调节(CNS)有积极作用。它是细胞色素P2D6 (CYP)的底物的可能性很小。除了对眼睛腐蚀和眼睛刺激有“非常轻微的风险”外,没有预料到戊酸中已知的毒性,这与湿实验室的数据是一致的。用生物浓度因子、大水蚤LC50等常用指标分析该分子对环境无危害。毒性参数表明,戊酸对雄激素受体、抗氧化反应元件、线粒体膜受体、热休克元件和肿瘤抑制蛋白(p53)无毒,但过氧化物酶体增殖物激活受体-γ (PPAR-γ)具有中等毒性。但7个参数均未发现毒菌。结论:总体而言,ADMETLab评估戊酸具有良好的药代动力学和药物相似性特征,使其成为新药开发的有希望的候选药物。
{"title":"Prediction of Pharmacokinetics of Valeric Acid: Alternative Tool to Minimize Animal Studies.","authors":"Bindu Kumari, Dhananjay Kumar Singh, Ravi Bhushan Singh, Gireesh Kumar Singh","doi":"10.2174/0113892002352975250310045810","DOIUrl":"10.2174/0113892002352975250310045810","url":null,"abstract":"<p><strong>Background: </strong>The use of computer-aided toxicity and Pharmacokinetic (PK) prediction studies are of significant interest to pharmaceutical industries as a complementary approach to traditional experimental methods in predicting potential drug candidates.</p><p><strong>Methods: </strong>In the present study, <i>in-silico</i> pharmacokinetic properties (ADME), drug-likeness, and toxicity profiles of valeric acid were examined using SwissADME and ADMETlab web tools.</p><p><strong>Results: </strong>The drug-likeness prediction results revealed that valeric acid adheres to the Lipinski rule, Pfizer rule, and GlaxoSmithKline (GSK) rule. From a pharmacokinetic perspective, valeric acid is anticipated to have the best absorption profile including cell permeability and bioavailability. Plasma Protein Binding (PPB) and Blood-Brain Barrier (BBB) permeability may have a positive effect on Central Nervous System modulating (CNS). There is a minimal chance of it being a substrate for cytochrome P2D6 (CYP). Except for a \"very slight risk\" for eye corrosion and eye irritation, none of the well-known toxicities in valeric acid were anticipated, which was compatible with wet-lab data. The molecule possesses no environmental hazard as analyzed with common indicators such as bio-concentration factor and LC<sub>50</sub> for fathead minnow and daphnia magna. The toxicity parameters identified valeric acid as nontoxic to androgen receptors, antioxidant response element, mitochondrial membrane receptor, heat shock element, and tumor suppressor protein (p53), except Peroxisome Proliferator-Activated Receptor- gamma (PPAR-γ) was found to be medium toxicity. However, no toxicophores were found out of seven parameters.</p><p><strong>Conclusion: </strong>Overall, the ADMETLab evaluated that valeric acid has favorable pharmacokinetic and drug-likeness profiles, making it a promising drug candidate for new drug development.</p>","PeriodicalId":10770,"journal":{"name":"Current drug metabolism","volume":" ","pages":"39-46"},"PeriodicalIF":1.8,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143662957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Current drug metabolism
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