Pub Date : 2026-01-12eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1733650
Maliha Ahmed, Sue Ann Campbell
Childhood absence epilepsy (CAE) often resolves during adolescence, a period marked by hormonal and neurosteroid changes associated with puberty. However, remission does not occur in all individuals. To investigate this clinical heterogeneity, we developed a simplified thalamocortical model with a layered cortical structure, using deep-layer intrinsically bursting (IB) neurons to represent frontal cortex and regular spiking (RS) neurons modeling the parietal cortex. By simulating two cortical configurations, we explored how variations in neuronal composition and frontocortical connectivity influence seizure dynamics and the effectiveness of allopregnanolone (ALLO) in resolving pathological spike-wave discharges (SWDs) associated with CAE. While both models exhibited similar physiological and pathological oscillations, only the parietal-dominant network (with a higher proportion of RS neurons in layer 5) recovered from SWDs under increased frontocortical connectivity following ALLO administration. These findings suggest that neuronal composition critically modulates ALLO-mediated resolution of SWDs, providing a mechanistic link between structural connectivity and clinical outcomes in CAE, and highlighting the potential for personalized treatment strategies based on underlying network architecture.
{"title":"Computational modeling of resistance to hormone-mediated remission in childhood absence epilepsy.","authors":"Maliha Ahmed, Sue Ann Campbell","doi":"10.3389/fncom.2025.1733650","DOIUrl":"10.3389/fncom.2025.1733650","url":null,"abstract":"<p><p>Childhood absence epilepsy (CAE) often resolves during adolescence, a period marked by hormonal and neurosteroid changes associated with puberty. However, remission does not occur in all individuals. To investigate this clinical heterogeneity, we developed a simplified thalamocortical model with a layered cortical structure, using deep-layer intrinsically bursting (IB) neurons to represent frontal cortex and regular spiking (RS) neurons modeling the parietal cortex. By simulating two cortical configurations, we explored how variations in neuronal composition and frontocortical connectivity influence seizure dynamics and the effectiveness of allopregnanolone (ALLO) in resolving pathological spike-wave discharges (SWDs) associated with CAE. While both models exhibited similar physiological and pathological oscillations, only the parietal-dominant network (with a higher proportion of RS neurons in layer 5) recovered from SWDs under increased frontocortical connectivity following ALLO administration. These findings suggest that neuronal composition critically modulates ALLO-mediated resolution of SWDs, providing a mechanistic link between structural connectivity and clinical outcomes in CAE, and highlighting the potential for personalized treatment strategies based on underlying network architecture.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1733650"},"PeriodicalIF":2.3,"publicationDate":"2026-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12833357/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146061069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-09eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1740570
Ahmed A Aldohbeyb, Jozsef Vigh, Kevin L Lear
Action potentials (AP) are the basic elements of information processing in the nervous system. Understanding AP generation mechanisms is a critical step to understand how neurons encode information. However, an individual neuron might fire APs with various shapes even in response to the same stimulus, and the mechanisms responsible for this variability remain unclear. Therefore, we analyzed four AP attributes including AP rapidity and threshold during consecutive bursts from three neuron types using intracellular electrophysiological recordings. In response to consecutive current steps, the AP attributes in evoked spike trains show two distinctive patterns across different neurons: (1) The first APs from each train always have comparable properties regardless of the stimulus strength; (2) The attributes of the subsequent APs during each pulse monotonically change during the burst, where the magnitude of AP attribute change during each pulse increases with increasing stimulation strength. Various conductance-based models were explored to determine if they replicated the observed AP bursts. The observed patterns could not be replicated using the classical HH-type models, or modified HH model with cooperative Na+ gating. However, adding ion concentration dynamics to the model reproduced the AP attribute variation, and the magnitude of change during a pulse correlated with change in dynamic reversal potential (DRP), but failed to replicate the first AP attributes pattern. Then, the role of cooperative Na+ gating on neuronal firing dynamics was investigated. Inclusion of cooperative gating restored the first APs' attributes and enhanced the magnitude of modeled variation of some AP attributes to better agree with observed data. We conclude that changes in local ion concentrations could be responsible for the monotonic change in APs attributes during neuronal bursts, and cooperative gating of Na+ channels can enhance the effect. Thus, the two mechanisms could contribute to the observed variability in neuronal response.
{"title":"The impact of dynamic reversal potential on the evolution of action potential attributes during spike trains.","authors":"Ahmed A Aldohbeyb, Jozsef Vigh, Kevin L Lear","doi":"10.3389/fncom.2025.1740570","DOIUrl":"10.3389/fncom.2025.1740570","url":null,"abstract":"<p><p>Action potentials (AP) are the basic elements of information processing in the nervous system. Understanding AP generation mechanisms is a critical step to understand how neurons encode information. However, an individual neuron might fire APs with various shapes even in response to the same stimulus, and the mechanisms responsible for this variability remain unclear. Therefore, we analyzed four AP attributes including AP rapidity and threshold during consecutive bursts from three neuron types using intracellular electrophysiological recordings. In response to consecutive current steps, the AP attributes in evoked spike trains show two distinctive patterns across different neurons: (1) The first APs from each train always have comparable properties regardless of the stimulus strength; (2) The attributes of the subsequent APs during each pulse monotonically change during the burst, where the magnitude of AP attribute change during each pulse increases with increasing stimulation strength. Various conductance-based models were explored to determine if they replicated the observed AP bursts. The observed patterns could not be replicated using the classical HH-type models, or modified HH model with cooperative Na<sup>+</sup> gating. However, adding ion concentration dynamics to the model reproduced the AP attribute variation, and the magnitude of change during a pulse correlated with change in dynamic reversal potential (DRP), but failed to replicate the first AP attributes pattern. Then, the role of cooperative Na<sup>+</sup> gating on neuronal firing dynamics was investigated. Inclusion of cooperative gating restored the first APs' attributes and enhanced the magnitude of modeled variation of some AP attributes to better agree with observed data. We conclude that changes in local ion concentrations could be responsible for the monotonic change in APs attributes during neuronal bursts, and cooperative gating of Na<sup>+</sup> channels can enhance the effect. Thus, the two mechanisms could contribute to the observed variability in neuronal response.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1740570"},"PeriodicalIF":2.3,"publicationDate":"2026-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12827510/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146046341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-08eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1737839
Manyun Zhang, Tianlei Wang, Zhiyuan Zhu
{"title":"Bridging neuromorphic computing and deep learning for next-generation neural data interpretation.","authors":"Manyun Zhang, Tianlei Wang, Zhiyuan Zhu","doi":"10.3389/fncom.2025.1737839","DOIUrl":"10.3389/fncom.2025.1737839","url":null,"abstract":"","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1737839"},"PeriodicalIF":2.3,"publicationDate":"2026-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12823815/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146051169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-30eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1712896
Awad Bin Naeem, Onur Osman, Shtwai Alsubai, Nazife Çevik, Abdelhamid Taieb Zaidi, Amir Seyyedabbasi, Jawad Rasheed
Introduction: Osteoporosis is the leading cause of sudden bone fractures. This is a silent and deadly disease that can affect any part of the body, such as the spine, hips, and knee bones.
Aim: To measure bone mineral density, dual-energy X-ray absorptiometry (DXA) scans help radiologists and other medical professionals identify early signs of osteoporosis in the spine.
Methods: A proposed 21-layer convolutional neural network (CNN) model is implemented and validated to automatically detect osteoporosis in spine DXA images. The dataset contains 174 spine DXA images, including 114 affected by osteoporosis and the rest normal or non-fractured. To improve training, the dataset is expanded using various data augmentation techniques.
Results: The classification performance of the proposed model is compared with that of four popular pre-trained models: ResNet-50, Visual Geometry Group 16 (VGG-16), VGG-19, and InceptionV3. With an F1-score of 97.16%, recall of 95.41%, classification accuracy of 97.14%, and precision of 99.04%, the proposed model consistently outperforms competing approaches.
Conclusion: The proposed paradigm would therefore be very valuable to radiologists and other medical professionals. The proposed approach's capacity to detect, monitor, and diagnose osteoporosis may reduce the risk of developing the condition.
骨质疏松症是导致突发性骨折的主要原因。这是一种无声的致命疾病,可以影响身体的任何部位,如脊柱、臀部和膝关节。目的:双能x线吸收仪(DXA)扫描测量骨矿物质密度,帮助放射科医生和其他医学专业人员识别脊柱骨质疏松症的早期迹象。方法:采用21层卷积神经网络(CNN)模型实现并验证脊柱DXA图像骨质疏松的自动检测。该数据集包含174个脊柱DXA图像,其中114个受骨质疏松症影响,其余正常或未骨折。为了改进训练,使用各种数据增强技术扩展数据集。结果:将该模型的分类性能与四种流行的预训练模型ResNet-50、Visual Geometry Group 16 (VGG-16)、VGG-19和InceptionV3进行了比较。该模型的f1得分为97.16%,召回率为95.41%,分类准确率为97.14%,精度为99.04%,始终优于竞争方法。结论:所提出的范例对放射科医生和其他医学专业人员非常有价值。提出的方法的能力,检测,监测和诊断骨质疏松症可能会降低发展的风险条件。
{"title":"Transferable CNN-based data mining approaches for medical imaging: application to spine DXA scans for osteoporosis detection.","authors":"Awad Bin Naeem, Onur Osman, Shtwai Alsubai, Nazife Çevik, Abdelhamid Taieb Zaidi, Amir Seyyedabbasi, Jawad Rasheed","doi":"10.3389/fncom.2025.1712896","DOIUrl":"10.3389/fncom.2025.1712896","url":null,"abstract":"<p><strong>Introduction: </strong>Osteoporosis is the leading cause of sudden bone fractures. This is a silent and deadly disease that can affect any part of the body, such as the spine, hips, and knee bones.</p><p><strong>Aim: </strong>To measure bone mineral density, dual-energy X-ray absorptiometry (DXA) scans help radiologists and other medical professionals identify early signs of osteoporosis in the spine.</p><p><strong>Methods: </strong>A proposed 21-layer convolutional neural network (CNN) model is implemented and validated to automatically detect osteoporosis in spine DXA images. The dataset contains 174 spine DXA images, including 114 affected by osteoporosis and the rest normal or non-fractured. To improve training, the dataset is expanded using various data augmentation techniques.</p><p><strong>Results: </strong>The classification performance of the proposed model is compared with that of four popular pre-trained models: ResNet-50, Visual Geometry Group 16 (VGG-16), VGG-19, and InceptionV3. With an F1-score of 97.16%, recall of 95.41%, classification accuracy of 97.14%, and precision of 99.04%, the proposed model consistently outperforms competing approaches.</p><p><strong>Conclusion: </strong>The proposed paradigm would therefore be very valuable to radiologists and other medical professionals. The proposed approach's capacity to detect, monitor, and diagnose osteoporosis may reduce the risk of developing the condition.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1712896"},"PeriodicalIF":2.3,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12797949/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145970555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The spatiotemporal learning rule (STLR) can reproduce synaptic plasticity in the hippocampus. Analysis of the synaptic weights in the network with the STLR is challenging. Consequently, our previous research only focused on the network's outputs. However, a detailed analysis of the STLR requires focusing on the synaptic weights themselves. To address this issue, we mapped the synaptic weights to a distance space and analyzed the characteristics of the STLR. The results indicate that the synaptic weights form a fractal-like structure in Euclidean distance space. Furthermore, three analytical approaches-multi-dimensional scaling, estimating fractal dimension, and modeling with an iterated function system-demonstrate that the STLR forms a fractal structure in the synaptic weights through fractal coding. These findings contribute to clarifying the learning mechanisms in the hippocampus.
{"title":"Fractal memory structure in the spatiotemporal learning rule.","authors":"Takemori Orima, Ichiro Tsuda, Minoru Tsukada, Hiromichi Tsukada, Yoshihiko Horio","doi":"10.3389/fncom.2025.1641519","DOIUrl":"10.3389/fncom.2025.1641519","url":null,"abstract":"<p><p>The spatiotemporal learning rule (STLR) can reproduce synaptic plasticity in the hippocampus. Analysis of the synaptic weights in the network with the STLR is challenging. Consequently, our previous research only focused on the network's outputs. However, a detailed analysis of the STLR requires focusing on the synaptic weights themselves. To address this issue, we mapped the synaptic weights to a distance space and analyzed the characteristics of the STLR. The results indicate that the synaptic weights form a fractal-like structure in Euclidean distance space. Furthermore, three analytical approaches-multi-dimensional scaling, estimating fractal dimension, and modeling with an iterated function system-demonstrate that the STLR forms a fractal structure in the synaptic weights through fractal coding. These findings contribute to clarifying the learning mechanisms in the hippocampus.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1641519"},"PeriodicalIF":2.3,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12748222/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145877866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-10eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1699179
Jing Yan, Yunxuan Feng, Wei P Dai, Yaoyu Zhang
Robustness, defined as a system's ability to maintain functional reliability in the face of perturbations, is achieved through its capacity to filter external disturbances using internal priors encoded in its structure and states. While biophysical neural networks are widely recognized for their robustness, the precise mechanisms underlying this resilience remain poorly understood. In this study, we explore how orientation-selective neurons arranged in a one-dimensional ring network respond to perturbations, with the aim of uncovering insights into the robustness of visual subsystems in the brain. By analyzing the steady-state dynamics of a rate-based network, we characterize how the activation state of neurons influences the network's response to disturbances. Our results demonstrate that the activation state of neurons, rather than their firing rates alone, governs the network's sensitivity to perturbations. We further show that lateral connectivity modulates this effect by shaping the response profile across spatial frequency components. These findings suggest a state-dependent filtering mechanism that contributes to the robustness of visual circuits, offering theoretical insight into how different components of perturbations are selectively modulated within the network.
{"title":"State-dependent filtering as a mechanism toward visual robustness.","authors":"Jing Yan, Yunxuan Feng, Wei P Dai, Yaoyu Zhang","doi":"10.3389/fncom.2025.1699179","DOIUrl":"10.3389/fncom.2025.1699179","url":null,"abstract":"<p><p>Robustness, defined as a system's ability to maintain functional reliability in the face of perturbations, is achieved through its capacity to filter external disturbances using internal priors encoded in its structure and states. While biophysical neural networks are widely recognized for their robustness, the precise mechanisms underlying this resilience remain poorly understood. In this study, we explore how orientation-selective neurons arranged in a one-dimensional ring network respond to perturbations, with the aim of uncovering insights into the robustness of visual subsystems in the brain. By analyzing the steady-state dynamics of a rate-based network, we characterize how the activation state of neurons influences the network's response to disturbances. Our results demonstrate that the activation state of neurons, rather than their firing rates alone, governs the network's sensitivity to perturbations. We further show that lateral connectivity modulates this effect by shaping the response profile across spatial frequency components. These findings suggest a state-dependent filtering mechanism that contributes to the robustness of visual circuits, offering theoretical insight into how different components of perturbations are selectively modulated within the network.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1699179"},"PeriodicalIF":2.3,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12728028/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145833550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-09eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1710961
Maurizio Cundari, Lena Kirchhoff, Susanna Vestberg, Danielle van Westen, Sigurd Dobloug, Karin Markenroth Bloch, Markus Nilsson, Linda Wennberg, Boel Hansson, Nikos Priovoulos, Anders Rasmussen, Sorina Gorcenco
<p><strong>Objective: </strong>This study primarily aimed to comprehensively characterize the neurological, neuroradiological and neurocognitive profiles, as well psychiatric features of individuals with Spinocerebellar Ataxia Type 34 (SCA34) associated with pathogenic variants in the <i>ELOVL4</i> gene. Secondarily, we investigated the relationship between neurocognitive functions and cerebellar morphology in individuals with SCA34 by correlating structural changes to cognitive performance. Given involvement of the cerebellum in SCA34, our findings will contribute to a broader understanding of the role of the cerebellum in cognition.</p><p><strong>Methods: </strong>Four individuals (52 f, 72 m, 76 m, 76 f) underwent DNA testing using Next-Generation Sequencing and detailed assessment of neurocognitive functions. The test battery evaluated all six cognitive domains: verbal functions, executive functions, attention and processing speed, learning and memory, visuospatial perception and abilities, and social cognition. In addition, cerebellar and motor functions were evaluated using Finger Tapping, Prism Adaptation, and the Motor Speed subtest of the Delis-Kaplan executive function system (D-KEFS). Test results were compared with each individual's estimated premorbid cognitive level, determined from their highest educational attainment or occupational status prior to disease onset. Psychiatric symptoms related to anxiety, depression, and sleep were reported using clinical scales. The Scale for the Assessment and Rating of Ataxia (SARA) was used to assess ataxia severity. Two individuals and one matched control underwent high-resolution 7T MRI to characterize cerebellar morphology.</p><p><strong>Results: </strong>Neurocognitive assessments identified cognitive and motor dysfunction across all individuals, including distinct neurocognitive impairments consistent with cerebellar cognitive-affective syndrome (CCAS), along with additional deficits in learning, visual and verbal episodic memory, emotion recognition-a component of social cognition. Anxiety and sleep disturbance, but not depression, were observed in both female participants. High-resolution 7 T MRI revealed structural cerebellar alterations, with moderate to severe bilateral cerebellar atrophy, including the vermis and multiple lobules (Crus II, VIIb, VIIIa, VIIIb, IX), as well as atrophy of the middle and superior cerebellar peduncles, accompanied by mild pontine atrophy. Genetic analyses confirmed the involvement of <i>ELOVL4</i>-related disruptions in long-chain fatty acid biosynthesis, offering insight into the molecular underpinnings of cerebellar degeneration in SCA34.</p><p><strong>Conclusion: </strong>Individuals with SCA34 show cerebellar degeneration accompanied by cognitive, motor, and social-affective impairments consistent with CCAS. Atrophy of the vermis, multiple lobules, and cerebellar peduncles align with these deficits, highlighting the cerebellum's key role in cognition.
目的:本研究主要旨在全面表征与ELOVL4基因致病变异相关的脊髓小脑性共济失调34型(SCA34)患者的神经学、神经放射学和神经认知特征以及精神特征。其次,我们通过将结构变化与认知表现相关联,研究了SCA34患者的神经认知功能与小脑形态之间的关系。考虑到小脑参与SCA34,我们的发现将有助于更广泛地理解小脑在认知中的作用。方法:采用新一代测序技术对4名个体(52英尺,72米,76米,76英尺)进行DNA检测,并详细评估神经认知功能。测试评估了所有六个认知领域:语言功能、执行功能、注意力和处理速度、学习和记忆、视觉空间感知和能力,以及社会认知。此外,采用手指敲击、棱镜适应和Delis-Kaplan执行功能系统(D-KEFS)的运动速度子测试对小脑和运动功能进行评估。测试结果比较了每个人发病前的估计认知水平,这是根据他们发病前的最高受教育程度或职业状况确定的。使用临床量表报告与焦虑、抑郁和睡眠相关的精神症状。使用共济失调评定量表(SARA)评定共济失调的严重程度。两名个体和一名匹配的对照组接受了高分辨率7T MRI来表征小脑形态。结果:神经认知评估确定了所有个体的认知和运动功能障碍,包括与小脑认知情感综合征(CCAS)一致的明显神经认知障碍,以及学习、视觉和言语情景记忆、情感识别(社会认知的一个组成部分)方面的额外缺陷。两名女性参与者都有焦虑和睡眠障碍,但没有抑郁。高分辨率7 T MRI显示小脑结构性改变,伴中重度双侧小脑萎缩,包括蚓部及多个小叶(II、VIIb、viia、VIIb、IX),小脑中上蒂萎缩,伴轻度脑桥萎缩。遗传分析证实,elovl4相关的破坏参与了长链脂肪酸生物合成,为SCA34小脑变性的分子基础提供了见解。结论:sc34患者表现为小脑变性,伴有认知、运动和社会情感障碍,与CCAS一致。蚓部、多小叶和小脑蒂的萎缩与这些缺陷一致,突出了小脑在认知中的关键作用。脂肪酸生物合成中elovl4相关的破坏提供了对SCA34分子基础的深入了解。总之,这些发现促进了我们对小脑病理如何导致遗传性共济失调中复杂的神经认知和精神症状的理解。
{"title":"Neurocognition, cerebellar functions and psychiatric features in spinocerebellar ataxia type 34: a case series.","authors":"Maurizio Cundari, Lena Kirchhoff, Susanna Vestberg, Danielle van Westen, Sigurd Dobloug, Karin Markenroth Bloch, Markus Nilsson, Linda Wennberg, Boel Hansson, Nikos Priovoulos, Anders Rasmussen, Sorina Gorcenco","doi":"10.3389/fncom.2025.1710961","DOIUrl":"10.3389/fncom.2025.1710961","url":null,"abstract":"<p><strong>Objective: </strong>This study primarily aimed to comprehensively characterize the neurological, neuroradiological and neurocognitive profiles, as well psychiatric features of individuals with Spinocerebellar Ataxia Type 34 (SCA34) associated with pathogenic variants in the <i>ELOVL4</i> gene. Secondarily, we investigated the relationship between neurocognitive functions and cerebellar morphology in individuals with SCA34 by correlating structural changes to cognitive performance. Given involvement of the cerebellum in SCA34, our findings will contribute to a broader understanding of the role of the cerebellum in cognition.</p><p><strong>Methods: </strong>Four individuals (52 f, 72 m, 76 m, 76 f) underwent DNA testing using Next-Generation Sequencing and detailed assessment of neurocognitive functions. The test battery evaluated all six cognitive domains: verbal functions, executive functions, attention and processing speed, learning and memory, visuospatial perception and abilities, and social cognition. In addition, cerebellar and motor functions were evaluated using Finger Tapping, Prism Adaptation, and the Motor Speed subtest of the Delis-Kaplan executive function system (D-KEFS). Test results were compared with each individual's estimated premorbid cognitive level, determined from their highest educational attainment or occupational status prior to disease onset. Psychiatric symptoms related to anxiety, depression, and sleep were reported using clinical scales. The Scale for the Assessment and Rating of Ataxia (SARA) was used to assess ataxia severity. Two individuals and one matched control underwent high-resolution 7T MRI to characterize cerebellar morphology.</p><p><strong>Results: </strong>Neurocognitive assessments identified cognitive and motor dysfunction across all individuals, including distinct neurocognitive impairments consistent with cerebellar cognitive-affective syndrome (CCAS), along with additional deficits in learning, visual and verbal episodic memory, emotion recognition-a component of social cognition. Anxiety and sleep disturbance, but not depression, were observed in both female participants. High-resolution 7 T MRI revealed structural cerebellar alterations, with moderate to severe bilateral cerebellar atrophy, including the vermis and multiple lobules (Crus II, VIIb, VIIIa, VIIIb, IX), as well as atrophy of the middle and superior cerebellar peduncles, accompanied by mild pontine atrophy. Genetic analyses confirmed the involvement of <i>ELOVL4</i>-related disruptions in long-chain fatty acid biosynthesis, offering insight into the molecular underpinnings of cerebellar degeneration in SCA34.</p><p><strong>Conclusion: </strong>Individuals with SCA34 show cerebellar degeneration accompanied by cognitive, motor, and social-affective impairments consistent with CCAS. Atrophy of the vermis, multiple lobules, and cerebellar peduncles align with these deficits, highlighting the cerebellum's key role in cognition. ","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1710961"},"PeriodicalIF":2.3,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12722519/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145827316","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-08eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1702902
Ihtisham Ul Haq, Abid Iqbal, Muhammad Anas, Fahad Masood, Ali S Alzahrani, Mohammed Al-Naeem
Introduction: Accurate and early identification of brain tumors is essential for improving therapeutic planning and clinical outcomes. Manual segmentation of Magnetic Resonance Imaging (MRI) remains time-consuming and subject to inter-observer variability. Computational models that combine Artificial Intelligence and biomedical imaging offer a pathway toward objective and efficient tumor delineation. The present study introduces a deep learning framework designed to enhance brain tumor segmentation performance.
Methods: A comprehensive ensemble architecture was developed by integrating Generative Autoencoders with Attention Mechanisms (GAME), Convolutional Neural Networks, and attention-augmented U-Net segmentation modules. The dataset comprised 5,880 MRI images sourced from the BraTS 2023 benchmark distribution accessed via Kaggle, partitioned into training, validation, and testing subsets. Preprocessing included intensity normalization, augmentation, and unsupervised feature extraction. Tumor segmentation employed an attention-based U-Net, while tumor classification utilized a CNN coupled with Transformer-style self-attention. The Generative Autoencoder performed unsupervised representation learning to refine feature separability and enhance robustness to MRI variability.
Results: The proposed framework achieved notable performance improvements across multiple evaluation metrics. The segmentation module produced a Dice Coefficient of 0.85 and a Jaccard Index of 0.78. The classification component yielded an accuracy of 87.18 percent, sensitivity of 88.3 percent, specificity of 86.5 percent, and an AUC-ROC of 0.91. The combined use of generative modeling, attention mechanisms, and ensemble learning improved tumor localization, boundary delineation, and false positive suppression compared with conventional architectures.
Discussion: The findings indicate that enriched representation learning and attention-driven feature refinement substantially elevate segmentation accuracy on heterogeneous MRI data. The integration of unsupervised learning within the pipeline supported improved generalization across variable imaging conditions. The demonstrated performance suggests strong potential for clinical utility, although broader validation across external datasets is recommended to further substantiate generalizability.
{"title":"GAME-Net: an ensemble deep learning framework integrating Generative Autoencoders and attention mechanisms for automated brain tumor segmentation in MRI.","authors":"Ihtisham Ul Haq, Abid Iqbal, Muhammad Anas, Fahad Masood, Ali S Alzahrani, Mohammed Al-Naeem","doi":"10.3389/fncom.2025.1702902","DOIUrl":"10.3389/fncom.2025.1702902","url":null,"abstract":"<p><strong>Introduction: </strong>Accurate and early identification of brain tumors is essential for improving therapeutic planning and clinical outcomes. Manual segmentation of Magnetic Resonance Imaging (MRI) remains time-consuming and subject to inter-observer variability. Computational models that combine Artificial Intelligence and biomedical imaging offer a pathway toward objective and efficient tumor delineation. The present study introduces a deep learning framework designed to enhance brain tumor segmentation performance.</p><p><strong>Methods: </strong>A comprehensive ensemble architecture was developed by integrating Generative Autoencoders with Attention Mechanisms (GAME), Convolutional Neural Networks, and attention-augmented U-Net segmentation modules. The dataset comprised 5,880 MRI images sourced from the BraTS 2023 benchmark distribution accessed via Kaggle, partitioned into training, validation, and testing subsets. Preprocessing included intensity normalization, augmentation, and unsupervised feature extraction. Tumor segmentation employed an attention-based U-Net, while tumor classification utilized a CNN coupled with Transformer-style self-attention. The Generative Autoencoder performed unsupervised representation learning to refine feature separability and enhance robustness to MRI variability.</p><p><strong>Results: </strong>The proposed framework achieved notable performance improvements across multiple evaluation metrics. The segmentation module produced a Dice Coefficient of 0.85 and a Jaccard Index of 0.78. The classification component yielded an accuracy of 87.18 percent, sensitivity of 88.3 percent, specificity of 86.5 percent, and an AUC-ROC of 0.91. The combined use of generative modeling, attention mechanisms, and ensemble learning improved tumor localization, boundary delineation, and false positive suppression compared with conventional architectures.</p><p><strong>Discussion: </strong>The findings indicate that enriched representation learning and attention-driven feature refinement substantially elevate segmentation accuracy on heterogeneous MRI data. The integration of unsupervised learning within the pipeline supported improved generalization across variable imaging conditions. The demonstrated performance suggests strong potential for clinical utility, although broader validation across external datasets is recommended to further substantiate generalizability.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1702902"},"PeriodicalIF":2.3,"publicationDate":"2025-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12719480/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145818570","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-26eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1647462
Takayuki Tsurumi, Kenji Morita
In learning goal-directed behavior, state representation is important for adapting to the environment and achieving goals. A predictive state representation called successive representation (SR) has recently attracted attention as a candidate for state representation in animal brains, especially in the hippocampus. The relationship between the SR and the animal brain has been studied, and several neural network models for computing the SR have been proposed based on the findings. However, studies on implementation of the SR involving action selection have not yet advanced significantly. Therefore, we explore possible mechanisms by which the SR is utilized biologically for action selection and learning optimal action policies. The actor-critic architecture is a promising model of animal behavioral learning in terms of its correspondence to the anatomy and function of the basal ganglia, so it is suitable for our purpose. In this study, we construct neural network models for behavioral learning using the SR. By using them to perform reinforcement learning, we investigate their properties. Specifically, we investigated the effect of using different state representations for the actor and critic in the actor-critic method, and also compared the actor-critic method with Q-learning and SARSA. We found the difference between the effect of using the SR for the actor and the effect of using the SR for the critic in the actor-critic method, and observed that using the SR in conjunction with one-hot encoding makes it possible to learn with the benefits of both representations. These results suggest the possibility that the striatum can learn using multiple state representations complementarily.
{"title":"A neural network model combining the successor representation and actor-critic methods reveals effective biological use of the representation.","authors":"Takayuki Tsurumi, Kenji Morita","doi":"10.3389/fncom.2025.1647462","DOIUrl":"10.3389/fncom.2025.1647462","url":null,"abstract":"<p><p>In learning goal-directed behavior, state representation is important for adapting to the environment and achieving goals. A predictive state representation called successive representation (SR) has recently attracted attention as a candidate for state representation in animal brains, especially in the hippocampus. The relationship between the SR and the animal brain has been studied, and several neural network models for computing the SR have been proposed based on the findings. However, studies on implementation of the SR involving action selection have not yet advanced significantly. Therefore, we explore possible mechanisms by which the SR is utilized biologically for action selection and learning optimal action policies. The actor-critic architecture is a promising model of animal behavioral learning in terms of its correspondence to the anatomy and function of the basal ganglia, so it is suitable for our purpose. In this study, we construct neural network models for behavioral learning using the SR. By using them to perform reinforcement learning, we investigate their properties. Specifically, we investigated the effect of using different state representations for the actor and critic in the actor-critic method, and also compared the actor-critic method with Q-learning and SARSA. We found the difference between the effect of using the SR for the actor and the effect of using the SR for the critic in the actor-critic method, and observed that using the SR in conjunction with one-hot encoding makes it possible to learn with the benefits of both representations. These results suggest the possibility that the striatum can learn using multiple state representations complementarily.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1647462"},"PeriodicalIF":2.3,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12689929/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145741795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-26eCollection Date: 2025-01-01DOI: 10.3389/fncom.2025.1685586
Zhaoyang Wang, Xianghui Fu, Bo Deng, Yang Chen, Haixing Zhao
In algebraic topology, a k-dimensional simplex is defined as a convex polytope consisting of k + 1 vertices. If spatial dimensionality is not considered, it corresponds to the complete graph with k + 1 vertices in graph theory. The alternating sum of the number of simplices across dimensions yields a topological invariant known as the Euler characteristic, which has gained significant attention due to its widespread application in fields such as topology, homology theory, complex systems, and biology. The most common method for calculating the Euler characteristic is through simplicial decomposition and the Euler-Poincaré formula. In this study, we introduce a new "subgraph" polynomial, termed the simplex polynomial, and explore some of its properties. Using those properties, we provide a new method for computing the Euler characteristic and prove the existence of the Euler characteristic as an arbitrary integer by constructing the corresponding simplicial complex structure. When the Euler characteristic is 1, we determined a class of corresponding simplicial complex structures. Moreover, for three common network structures, we present the recurrence relations for their simplex polynomials and their corresponding Euler characteristics. Finally, at the end of this study, three basic questions are raised for the interested readers to study deeply.
{"title":"Simplex polynomial in complex networks and its applications to compute the Euler characteristic.","authors":"Zhaoyang Wang, Xianghui Fu, Bo Deng, Yang Chen, Haixing Zhao","doi":"10.3389/fncom.2025.1685586","DOIUrl":"10.3389/fncom.2025.1685586","url":null,"abstract":"<p><p>In algebraic topology, a <i>k</i>-dimensional simplex is defined as a convex polytope consisting of <i>k</i> + 1 vertices. If spatial dimensionality is not considered, it corresponds to the complete graph with <i>k</i> + 1 vertices in graph theory. The alternating sum of the number of simplices across dimensions yields a topological invariant known as the Euler characteristic, which has gained significant attention due to its widespread application in fields such as topology, homology theory, complex systems, and biology. The most common method for calculating the Euler characteristic is through simplicial decomposition and the Euler-Poincaré formula. In this study, we introduce a new \"subgraph\" polynomial, termed the simplex polynomial, and explore some of its properties. Using those properties, we provide a new method for computing the Euler characteristic and prove the existence of the Euler characteristic as an arbitrary integer by constructing the corresponding simplicial complex structure. When the Euler characteristic is 1, we determined a class of corresponding simplicial complex structures. Moreover, for three common network structures, we present the recurrence relations for their simplex polynomials and their corresponding Euler characteristics. Finally, at the end of this study, three basic questions are raised for the interested readers to study deeply.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"19 ","pages":"1685586"},"PeriodicalIF":2.3,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12689876/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145741829","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}