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Microbial Treatment of di (2-ethyl hexyl) Phthalate by Lysinibacillus xylanilyticus Isolated from Landfill Soil 垃圾填埋场土壤中木酵母菌对邻苯二甲酸二(2-乙基己基)的微生物处理
Pub Date : 2023-01-25 DOI: 10.18811/ijpen.v8i03.09
T. ., M. Rashmi, Shiv. K. Singh
The bacterial strains were isolated from landfill soil contaminated with phthalate, collected from dump yard near Byepass, Patna. Thestrain named T23 was chosen among the isolated strains due to its high efficacy towards the degradation. We observed the effects ofvarious environmental and chemical factors for optimising the conditions for degradation. The strain T23 was identified as Lysinibacillusxylanilyticus based on its phenotypic as well as phylogenetic characteristics by performing 16S rRNA gene sequencing and for thedetermination of the metabolic end products after degradation. Gas chromatography and mass spectrometry (GC-MS) analysis was doneand the degradable intermediates obtained were 7, 10, 13-Hexadecatrienoic acid, Cyclotrisiloxane, n-Hexadecanoic acid, Oleic Acid andErucic acid. The strain T23 showed maximum degradation at pH 8.5 and temperature was 10.5 and it could tolerate up to 0-15% NaCl.Maximum degradation was exhibited at the carbon source, dextrose, and nitrogen source, casein. The 23 strain was having maximumpotential for degradation which can be used for various remediation purposes.
该菌株是从巴特那市Byepass附近垃圾场被邻苯二甲酸盐污染的垃圾填埋场土壤中分离得到的。菌株T23因其降解效率高而被选为分离菌株。我们观察了各种环境和化学因素对优化降解条件的影响。通过16S rRNA基因测序和降解后代谢终产物测定,根据菌株表型和系统发育特征,鉴定菌株T23为Lysinibacillusxylanilyticus。气相色谱-质谱(GC-MS)分析得到可降解中间体为7,10,13 -十六烷酸、环三硅氧烷、正十六烷酸、油酸和亚绿酸。菌株T23在pH为8.5、温度为10.5时降解效果最好,耐NaCl浓度为0 ~ 15%。碳源葡萄糖和氮源酪蛋白的降解作用最大。菌株23具有最大的降解潜力,可用于各种修复目的。
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引用次数: 0
Four ‘Bio’ Traits Craft Pigeonpea (Cajanus Cajan (L.) Millsp) to Survive in a Dry Soil Environment under Intercropping Situation -A Review 工艺鸽豆(Cajanus Cajan (L.))的四个“生物”特性间作条件下小麦在干旱土壤环境中的生存研究进展
Pub Date : 2023-01-25 DOI: 10.18811/ijpen.v8i03.05
Swaminathan Chitraputhirapillai, P. Kannan, N. Krishnaprabu, M. Yassin
The climate of the rainfed tropics is complex in nature and intercropping aids in reducing the great peril of cropping under suchconditions. Dryland or rainfed crops produce low economic yield and soils are eroded with diminishing soil fertility, hence it is timelyto select an anchor crop for intercropping situations by reviewing various research publications.This work has been carried out at the Agronomy Department, Agricultural College and Research Institute, TNAU, Madurai India. Amethodical cum integrative review of past work done elsewhere, particularly in India was figured out. Nearly 200 research articles werescanned from different databases and 112 papers were utilised to write this review.This review article comprehensively documents the uniqueness of pigeon pea, being a long-duration legume having advantages likesoil fertility enhancement, multiple harvests, etc., over annual short-duration crops and how it could be called an anchor crop underintercropping systems. And hence, the inclusion of drought-resilient pigeon peas for sustaining soil health and farm productivity underintercropping systems in semi-arid alfisol would be ideal.
热带雨养地区的气候本质上是复杂的,间作有助于减少在这种条件下种植的巨大危险。旱地或雨养作物的经济产量低,土壤因土壤肥力下降而受到侵蚀,因此通过查阅各种研究出版物来选择间作条件下的锚定作物是及时的。这项工作是在印度马杜赖印度国立农业大学农学院和研究所农学系进行的。对过去在其他地方,特别是在印度所做的工作进行了方法和综合审查。从不同的数据库中扫描了近200篇研究论文,并使用了112篇论文来撰写本综述。本文全面论述了鸽豆作为一种长茬豆科植物,与一年生短茬作物相比,具有提高土壤肥力、多次收获等优点,可作为间作系统下的锚定作物。因此,在半干旱的阿尔菲索地区,在间作系统下种植抗旱鸽子豆以维持土壤健康和农业生产力将是理想的。
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引用次数: 0
Indigenous Knowledge of Lichens can Improve Human Life in Tribal Areas of Arunachal Pradesh: A Case Study 地衣的土著知识可以改善**部落地区的人类生活:一个案例研究
Pub Date : 2023-01-25 DOI: 10.18811/ijpen.v8i03.11
R. Bajpai, L. T. Thungon, C. Singh, D. Upreti
The higher eastern Himalayan regions of India exhibit the luxuriance of different lichen taxa together with other group of plants. The“Punpun” is a common name of lichens used by the Sherdukpen tribe of West Kameng District of Arunachal Pradesh in Eastern IndianHimalayan regions. The punpun or lichens are gorgeous in nutrients and contains biologically active compounds belonging to variouschemical clades. The tribal people have gigantic traditional knowledge about lichens thus allowing them to use different types oflichens to fulfil their dietary need along with medicinal prospects. The present information was collected during the field visit to thearea between the years 2017-2021. The tribal people in the area prepared some delicious diets from the punpun and served as nutritiveethnic food to tourists visiting there. Though tribal people have great knowledge of lichen uses, but they lack the acquaintance ofappropriate species proficiency. The tribal people provided the detailed methodologies and application of lichens which may be usefulin near future for bioprospection and herbal drug development. The present case study is presented with an aim to encourage thetribal people to investigate further applications of lichens to improve the life of surronding inhabitants and to make them aware of theimportance and conservation of lichen species.
印度喜马拉雅东部高海拔地区与其他植物群一起展示了不同地衣类群的繁茂。“Punpun”是印度东部喜马拉雅地区**西卡蒙地区Sherdukpen部落对地衣的通用名称。地衣营养丰富,含有各种化学分支的生物活性化合物。部落人民对地衣有着丰富的传统知识,因此他们可以使用不同类型的地衣来满足他们的饮食需求和药用前景。目前的信息是在2017-2021年期间对该地区进行实地考察期间收集的。该地区的部落居民用双关语制作了一些美味的食物,并作为有营养的民族食品提供给游客。虽然部落居民很了解地衣的用途,但他们缺乏对适当物种的熟悉。部落居民提供了地衣的详细方法和应用,为将来的生物勘探和草药开发提供了参考。本案例研究的目的是鼓励部落人民进一步研究地衣的应用,以改善周围居民的生活,并使他们意识到地衣物种的重要性和保护。
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引用次数: 0
Why Natural Farming Technology be Adopted and Researches Intensified? 为什么要采用自然耕作技术并加强研究?
Pub Date : 2023-01-25 DOI: 10.18811/ijpen.v8i03.02
R. Dwivedi, R. Bajpai
Rising environmental Pollution, decreasing soil fertility, augmenting ground water contamination with NO3, As, Pb, Cd, etc deterioratingvegetables, fruits, edible grains and milk quality due to poisonous chemicals and thereby increasing health hazards are great threatat global level. The chemical laden agriculture is one of the pivotal causes for such consequences and “Punjab cancer train” in Indiacarrying hundreds of cancer patients daily from Bhatinda (Punjab) to Bikaner (Rajasthan) for treatments, are well known. Natural farmingtechnology trained farmers from eleven states viz., Gujarat, Maharashtra, Uttar Pradesh, Himachal Pradesh, Madhya Pradesh, Uttarakhand,Meghalaya, Chhattisgarh, Kerala, Karnataka and Andhra Pradesh of India are getting spectacular higher yield and good quality pollutantfree crop harvest and edible products. This technology is comprised of treating seeds with Beejamrit and Ghanajeewamrit to improveseed germination and improve soil health and crop growth. Spraying of Neemastra, or Agniastra or Bramhastra are done to controlinsect, pests and plant diseases without polluting environment. Natural farming is broadly synonym to Vedic Agriculture, cosmic farmingand Homa therapy using Agnihotra ash. Promotion of microorganism, Indian earthworms, Indian breed cows and water conservationthrough crop residues or intercropping practices are the key epithets of natural farming. This technology has been found to be costeffective and pollution free, also called as ‘Zero Budget Agriculture’ since all the inputs are natural and domestically produced. The prosand cons of this technology with a view to make a sensible decision for its adoption at local, state, national and international level arediscussed in this paper.In case of some technological impetigo in attaining present level of crop productivity on large scale, the challenges before agriculturescientists are to ameliorate natural farming technology and maintain health friendly environment, harvest higher crop yield and assurefood security to burgeoning population.
环境污染加剧,土壤肥力下降,地下水NO3、As、Pb、Cd等污染加剧,有毒化学物质使蔬菜、水果、食用谷物和牛奶的品质恶化,从而增加了健康危害,这是全球范围内的重大威胁。充满化学物质的农业是造成这些后果的关键原因之一,印度的“旁遮普癌症列车”每天从旁遮普的巴蒂达(Bhatinda)运送数百名癌症患者到比卡内尔(Rajasthan)接受治疗,这是众所周知的。来自印度古吉拉特邦、马哈拉施特拉邦、北方邦、喜马偕尔邦、中央邦、北阿坎德邦、梅加拉亚邦、恰蒂斯加尔邦、喀拉拉邦、卡纳塔克邦和安得拉邦等11个邦的农民,经过自然农业技术培训,获得了惊人的高产、优质无污染的作物收成和食用产品。该技术包括用Beejamrit和Ghanajeewamrit处理种子,以提高种子发芽,改善土壤健康和作物生长。喷洒Neemastra或Agniastra或Bramhastra是为了控制害虫和植物疾病而不污染环境。自然农业大致上是吠陀农业、宇宙农业和使用Agnihotra灰烬的Homa疗法的同义词。推广微生物、印度蚯蚓、印度品种奶牛和通过作物残茬或间作方法节约水资源是自然农业的关键。这项技术已被发现具有成本效益和无污染,也被称为“零预算农业”,因为所有投入都是天然的和国内生产的。本文对该技术的优缺点进行了讨论,以期在地方、州、国家和国际层面上作出明智的决定。在大规模实现目前作物生产力水平的过程中存在一些技术障碍的情况下,农业科学家面临的挑战是改进自然农业技术,保持健康友好的环境,收获更高的作物产量,并确保新兴人口的粮食安全。
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引用次数: 0
Isolation of AM Fungi from Rhizospheric Soil and Assessing Their Potential in Revegetating the Mining Wasteland of Gujarat using Inoculated Trees Saplings 古吉拉特邦根际土壤AM真菌的分离及接种树苗对矿山废弃地恢复的潜力评价
Pub Date : 2023-01-25 DOI: 10.18811/ijpen.v8i03.03
A. Arya
Fluorspar (CaF2), is a common mineral, occurring in green, purple, yellow, or colorless crystals, which is used in metallurgy and makinga variety of chemicals used in refrigeration. Kadipani in Gujarat has large deposits of this ore. Open cast mining by GMDC has resultedin disturbed ecology. Earlier the efforts have been made by the forest department to grow tree species, in order to restore the forestecosystem, but the plants grew slowly and with stunted morphology and scanty survival. The obligate fungal symbionts known asarbuscular mycorrhizal fungi (AMF) present in plants play a key factor supporting plant growth in stressed conditions. Therefore, AMFstrains were first isolated from mining area and were used to raise the saplings first in polybags. Then after 75 days these were used forrevegetating the mine burdens or nearby waste land. The paper presents a pioneering efforts made to isolate and identify, the AMFfrom Fluorspar mines in Gujarat and then Glomus fasciculatum was incorporated in polybags filled with normal garden soil. Plants werealso raised by single spore inoculation method. Preliminary experiments revealed that the inoculated AMF strains promoted seedlinggrowth of Leuceana leucocephala and Millettia pinnata. The inoculation of AMF spores enhanced the growth of both the plants, and suchapplication can be used in sustainable restoration of the mining areas. Review discusses the structure of AM spores and mechanismsinvolved to equip them to survive in stressed situations and as symbionts help the plants to perform better.
氟石(CaF2)是一种常见的矿物,呈绿色、紫色、黄色或无色晶体,用于冶金和制造各种用于制冷的化学品。古吉拉特邦的卡迪帕尼有大量这种矿石的矿床。GMDC露天开采造成了生态破坏。早先林业部门为恢复森林生态系统,进行了植树造林的努力,但树木生长缓慢,形态发育不良,成活率低。植物中的专性真菌共生体——丛枝菌根真菌(AMF)在逆境条件下起着支持植物生长的关键作用。因此,amf菌株首先从矿区分离出来,并首先在塑料袋中培养树苗。然后在75天后,这些被用来重新种植矿山负担或附近的荒地。本文介绍了从古吉拉特邦的萤石矿中分离和鉴定amm的开创性工作,然后将束状Glomus fasculatum纳入普通花园土壤填充的塑料袋中。采用单孢子接种法培养植株。初步试验表明,接种AMF菌株可促进白头翁和千穗草的幼苗生长。接种AMF孢子可促进两种植物的生长,可用于矿区的可持续恢复。综述讨论了AM孢子的结构和机制,使它们能够在逆境中生存,并作为共生体帮助植物更好地表现。
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引用次数: 0
Effect of Abiotic Stress on Plant Growth and Development, Physiological and Breeding Strategies to Overcome Stress Condition 非生物胁迫对植物生长发育的影响及克服胁迫条件的生理和育种策略
Pub Date : 2023-01-25 DOI: 10.18811/ijpen.v8i03.01
G. Pawar, Pramod Sargar, G. Naik, Smita Deshmukh, P. Shedge, Swapnil Halge, Avadhut Pawar, P. N. Reddy
Abiotic stress is a significant factor in “climate change,” a complex phenomena with several unpredictable negative repercussions onthe environment. Abiotic stress alters the continuity between soil and plant atmosphere, reducing the yield of several essential crops.Abiotic stress now poses a considerable obstacle to plant development, and it will certainly worsen as desertification spreads acrossa larger section of the planet’s land area. The agriculture sector is significantly impacted by the weather and environment. Traditionalfarming methods and the food production required to sustain the nation’s growing population might be threatened by climate change.Improved cultivars created via breeding for a greater harvest index and disease tolerance were readily embraced during this periodof relatively consistent weather. Extreme climatic variability is projected due to climate change in this century. In many nations thatproduce crops, the agricultural climate will likely be warmer with more unpredictable rainfall, and stress spikes will be more severe. Tomaintain a growing population, agricultural productivity must be increased under more unfavourable environmental conditions. UsingGPS locators and climatic data from across the world, it is now feasible to comprehensively examine the genetic diversity in ancientlocal landraces to characterise the natural selection for local adaptation and to identify potential germplasm for tolerances to highstresses . With the use of candidate gene techniques and next generation sequencing, the physiological and biochemical componentsof these manifestations may be genomically examined. Wild relatives of crops possess practically untapped genetic diversity for abioticand biotic stress tolerances and may greatly improve the domesticated gene pools presently available as a survival omics strategy toassist crops endure the expected extremes of climate change. It is an issue to increase agricultural productivity in the face of climatechange. In order to achieve this, it is necessary to combine a number of disciplines, including eco-geographical assessments of geneticresources, modern advances in genomics, agronomy, and farm management, all of which are backed by knowledge of how genotypeenvironmentinteraction affects crop climate adaptability.
非生物胁迫是“气候变化”的一个重要因素,气候变化是一种复杂的现象,对环境有几种不可预测的负面影响。非生物胁迫改变了土壤和植物大气之间的连续性,降低了几种重要作物的产量。现在,非生物胁迫对植物的发展构成了相当大的障碍,而且随着沙漠化在地球陆地面积的更大范围内蔓延,这种障碍肯定会恶化。农业部门受到天气和环境的严重影响。传统的农业方法和维持国家不断增长的人口所需的粮食生产可能受到气候变化的威胁。在这段相对稳定的天气期间,通过育种创造的收获指数更高、抗病能力更强的改良品种很容易被接受。由于本世纪的气候变化,预估了极端气候变率。在许多生产农作物的国家,农业气候可能会变暖,降雨量将更加不可预测,压力峰值将更加严重。为了保持人口的增长,必须在更不利的环境条件下提高农业生产力。利用全球定位系统定位器和来自世界各地的气候数据,现在可以全面检查古代地方地方种族的遗传多样性,以描述当地适应的自然选择,并确定潜在的耐高压种质。随着候选基因技术和下一代测序的使用,这些表现的生理生化成分可能被基因组检测。作物的野生近缘种具有几乎未开发的非生物和生物抗逆性遗传多样性,可以极大地改善目前可用的驯化基因库,作为生存组学策略,以帮助作物承受预期的极端气候变化。面对气候变化,提高农业生产力是一个问题。为了实现这一目标,有必要将许多学科结合起来,包括遗传资源的生态地理评估、基因组学、农学和农场管理的现代进展,所有这些都以基因型-环境相互作用如何影响作物气候适应性的知识为基础。
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引用次数: 0
Heterosis and Combining Ability Estimation in Hexaploid Wheat (Triticum aestivum L.) with the Feasibility of Developing F1 Hybrid in Half Diallel Mating Design 六倍体小麦(Triticum aestivum L.)杂种优势和配合力评价及半双列杂交设计F1杂种的可行性
Pub Date : 2023-01-25 DOI: 10.18811/ijpen.v8i03.08
G. Kaur, Ravi Kumar, Sandeep Singh
During 2019-20, and 2020-21 present study was carried out at Mata Gujri College, Fatehgarh Sahib’s Experimental Farm, Department ofAgriculture. Experimental materials comprising 15 F1s using half diallel mating design involving six parents(HD 1981, PBW 343, CPAN3004, RAJ 2184, PBW 154, and PBW 65) collected from IIWBR (Indian Institute of Wheat and Barley Research) New Delhi, India and onecheck (HD 2967) was grown in RBD. The variance due to parents was highly significant for most of the traits. Variances due to crosseswere significant for all the traits. Estimation of heterosis, PBW 343 x CPAN 3004 was cross found to be most promising for grain yield/plant. General combing ability (GCA) effects revealed that PBW 65 followed by CPAN 3004 having significant and positive GCA effectsand PBW 65 was observed as the best combiner for yielding characters as no. of grain/plant and on the basis of Specific combiningability (SCA), PBW 154 x PBW 65, PBW 343 x CPAN 3004 and HD 1981 x PBW 65 were recorded best specific combinations for higheryield. The above parents and crosses can be used in hybridization and heterosis breeding.
在2019- 2020年和2020-21年期间,本研究在农业部Fatehgarh Sahib实验农场Mata Gujri学院进行。试验材料为15个f15,采用半双列杂交设计,涉及6个亲本(hd1981、PBW 343、CPAN3004、RAJ 2184、PBW 154和PBW 65),来自印度新德里的IIWBR(印度小麦和大麦研究所),其中一个是在RBD中生长的(hd2967)。大多数性状的亲本变异极显著。所有性状的杂交方差均显著。杂种优势评价结果显示,pbw343与CPAN 3004杂交在单株产量上最有潜力。综合配合力(GCA)效应表明,PBW 65后配CPAN 3004具有显著的正GCA效应,PBW 65是产量性状的最佳配合力。根据特定配合力(SCA), pbw154 × pbw65、pbw343 × CPAN 3004和hd1981 × pbw65是产量最高的特定组合。上述亲本和杂交组合可用于杂交和杂种优势育种。
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引用次数: 0
Effectiveness of Pollen Germination Media for Improving Storage Potential in Pomegranate (Punica granatum) Germplasm 花粉萌发培养基对提高石榴种质贮藏潜力的影响
Pub Date : 2022-12-30 DOI: 10.33687/jpe.004.02.3896
S. Ikram, M. J. Jaskani, Salman Ikram, M. A. Qureshi, S. Rehman, M. Hussain, W. Shafqat, S. U. Din, M. Zafar, S. Raza, Syed Inam Ullah Shah Bukhari
Viable pollen grains with the ability to germinate after fertilization are necessary for fruit and seed formation. Pollens are sensitive to environmental conditions and quickly lose their viability after anthesis. In vitro storage potential of pollen grains depends on species, genotype, flower type, and storage conditions. The present study's objective was to evaluate pomegranate germplasm's storage potential and to study germination media's influence on short-term stored pollen's germination percentage. Pollens of fifteen pomegranate genotypes were collected and stored at 4 °C for 30 days. Pollen viability was assessed using in vitro pollen germination by the agar-Petri method. The germination media was composed of different concentrations of sucrose, boric acid, and agar. The results showed that germination media (12.5% sucrose + 0.2% agar) supplemented with 10 ppm boric acid gave the highest germination among all cultivars. Among genotypes, maximum (58.3%) germination was observed in Desi and Kandhari red pollens, and minimum (16.3%) was observed in Sandhora. The concentration of boric acid in germination media influenced pollen germination. The highest pollen germination was found at 10 ppm, followed by 5 ppm, and the lowest germination was found in media with no boric acid. Conclusively genotypes show variation in storage potential, and germination media influences post-storage germination rate. The utilization of effective germination media can increase the pollen germination rate for pomegranate genotypes.
受精后能够发芽的花粉粒是果实和种子形成所必需的。花粉对环境条件敏感,开花后很快失去活力。花粉粒的体外贮藏潜力取决于品种、基因型、花型和贮藏条件。本研究的目的是评价石榴种质资源的贮藏潜力,研究萌发介质对短期贮藏花粉发芽率的影响。收集15种石榴基因型的花粉,在4℃下保存30 d。采用琼脂-皮氏法测定离体花粉萌发率,评价花粉活力。萌发培养基由不同浓度的蔗糖、硼酸和琼脂组成。结果表明,在12.5%蔗糖+ 0.2%琼脂的萌发培养基中添加10 ppm硼酸的萌发率最高。在基因型中,德西红花粉和干哈里红花粉的发芽率最高(58.3%),桑多拉红花粉的发芽率最低(16.3%)。萌发培养基中硼酸浓度对花粉萌发有影响。10 ppm时花粉萌发率最高,5 ppm次之,不添加硼酸时萌发率最低。最后,基因型表现出贮藏潜力的差异,萌发介质影响贮藏后发芽率。有效萌发培养基的利用可以提高石榴基因型的花粉发芽率。
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引用次数: 0
Water Quality of Nullah Aik on Various Locations of Districts Sialkot and Gujranwala, Pakistan 巴基斯坦锡亚尔科特和古杰兰瓦拉地区不同地点的艾克明渠水质
Pub Date : 2022-12-30 DOI: 10.33687/jpe.004.02.3931
Mobeen Arif, K. Bhatti, E. Siddiqui, M. Ajaib, M. Ishtiaq, G. Rehman, Mohsin Ali, A. Khan
The present study focused on water quality assessment of Nullah Aik on various locations of districts Sialkot and Gujranwala, Pakistan. Samples of water from various locations of Nullah were collected in June (Pre-Monsoon) and September (post-Monsoon) in 2020. These samples were taken to the laboratory for assessment of various chemical parameters. Calcium found to be highly significant (p 0.001), total hardness, chemical oxygen demand (COD) and biological oxygen demand (BOD) identified as significant (p 0.05) while other parameters i.e., total dissolved solids (TDS), electrical conductivity (EC), pH, turbidity, Chlorine (Cl), nitrate (NO3), salinity, magnesium (Mg), iron (Fe), lead (Pb) and cadmium (Cd) revealed no significant (p0.05) co-relation.   The results indicated that all the parameters had significant spatio-temporal variations during June due to low rain falls which as result higher contaminant concentrations. Whereas during September there were higher flooding due to monsoon rains, consequently the contaminants were found in diluted concentrations. It is concluded that natural as well as anthropogenic factors are responsible for surface water contamination.
本研究的重点是对巴基斯坦锡亚尔科特和古吉兰瓦拉地区不同地点的Aik明渠水质进行评价。2020年6月(季风前)和9月(季风后)在明渠不同地点采集了水样。这些样品被带到实验室进行各种化学参数的评估。钙含量显著(p < 0.001),总硬度、化学需氧量(COD)和生物需氧量(BOD)显著(p < 0.05),而其他参数如总溶解固形物(TDS)、电导率(EC)、pH、浊度、氯(Cl)、硝酸盐(NO3)、盐度、镁(Mg)、铁(Fe)、铅(Pb)和镉(Cd)无显著相关(p < 0.05)。结果表明:6月降水偏少,污染物浓度升高,各参数均有显著的时空变化;而在9月份,由于季风降雨,洪水泛滥,因此发现污染物浓度被稀释。结论认为,自然因素和人为因素都是地表水污染的原因。
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引用次数: 0
Detection, Identification and Molecular Characterization of Tomato Mosaic Virus (ToMV) Isolates from Pakistan. 巴基斯坦番茄花叶病毒(ToMV)分离株的检测、鉴定及分子特性研究。
Pub Date : 2022-12-30 DOI: 10.33687/jpe.004.02.452
Adnan Ahmad, Farkhanda Shaheen, Y. Saleem, M. Gillani, Sanniya Rasool, Ramsha Essa, I. Parveen, R. Nadeem, Ramla Ashfaq, M. Sarwar
Tomato mosaic virus (ToMV) is one of the lethal tomato pathogens. In this study, we collected tomato leaves exhibiting interveinal chlorosis from farmer’s fields in district Lahore, Pakistan. The presence of tobamoviruses was confirmed through extracting RNA, cDNA synthesis, PCR amplification and subsequent sequencing of capsid protein (CP) gene of ToMV that contained 480 nucleotides (encoded for 160 amino acids making ~17 kDa protein) located at 5703rd to 6182nd nucleotide position in ToMV genome. In sequence analysis, Pakistani isolates shared 98.9-99.5% and 97.3-99.3% nucleotide and amino acid homologies with each other and 96-99% and 90-98.6% with other isolates respectively. In phylogenetic analysis the Pakistani isolates grouped with Iranian and Chines isolates, exhibiting higher nucleotides and amino acids identities as well. This research reveals a geographical association among Pakistani, Chines and Iranian ToMV isolates. The study suggests extensive surveys of tobamoviruses infecting field crops for their detailed genetic information.
番茄花叶病毒(ToMV)是番茄致病菌之一。在这项研究中,我们从巴基斯坦拉合尔地区农民的田地中收集了显示脉间黄化的番茄叶片。通过对位于ToMV基因组第5703 ~ 6182位的衣壳蛋白(capsid protein, CP)基因的提取RNA、cDNA合成、PCR扩增和测序,证实了ToMV的存在。该基因含有480个核苷酸(编码160个氨基酸,形成~17 kDa蛋白)。序列分析显示,巴基斯坦分离株核苷酸和氨基酸同源性分别为98.9 ~ 99.5%和97.3 ~ 99.3%,与其他分离株核苷酸和氨基酸同源性分别为96 ~ 99%和90 ~ 98.6%。在系统发育分析中,巴基斯坦分离株与伊朗和中国分离株归为一类,表现出更高的核苷酸和氨基酸特征。这项研究揭示了巴基斯坦、中国和伊朗的ToMV分离株之间的地理联系。该研究建议对感染大田作物的多巴胺病毒进行广泛调查,以获取其详细的遗传信息。
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引用次数: 0
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INTERNATIONAL JOURNAL OF PLANT AND ENVIRONMENT
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