首页 > 最新文献

Journal of biotechnology & biomaterials最新文献

英文 中文
Stem cell therapy for the treatment of severe tissue damage after radiation exposure 干细胞疗法治疗辐射暴露后严重组织损伤
Pub Date : 2016-09-02 DOI: 10.4172/2155-952X.C1.059
Eliana Mariño
I recent years, the application of attenuated strains of Salmonella spp. has been widely investigated for the development of various biotechnological products, especially vaccines. However, the industrial production of these compounds is hampered by metabolic constraints presented by Salmonella cells, which naturally produce high amounts of growth inhibitor metabolites, mainly acetate. To deal with this problem, two different approaches were evaluated in the present work: Changing culture conditions (carbon source evaluation) and implementing genetic modifications (enhancement of cell’s acetate scavenging capabilities by overexpression of acetyl-CoA synthetase (ACS)). Wild type and recombinant cells were cultured in minimal medium with glucose or glycerol as carbon source in Erlenmeyer flasks agitated at 200 rpm and 37 oC. Samples were collected during cultivation and analyzed by HPLC to quantify organic acids production and the carbon source consumption. Cellular growth was assessed by optical density readings (OD 600 nm) of the culture broth. The results showed that the carbon source plays an important role on byproducts excretion by S. typhimurium cells, indicating that for both strains acetate production is greatly reduced using glycerol. The overexpression of ACS also reduced the acetate accumulation as this enzyme acted assimilating the excreted acetate. From all the conditions studied, the best results were obtained by the recombinant cells cultured in glycerol. An increase of 40% of biomass production was achieved, while the acetate accumulation was reduced by more than 50% in comparison to the average values registered in the other experiments.
近年来,沙门氏菌减毒菌株的应用已被广泛研究,用于各种生物技术产品,特别是疫苗的开发。然而,这些化合物的工业生产受到沙门氏菌细胞代谢限制的阻碍,沙门氏菌细胞自然产生大量的生长抑制剂代谢物,主要是醋酸盐。为了解决这一问题,本工作评估了两种不同的方法:改变培养条件(碳源评估)和实施遗传修饰(通过过度表达乙酰辅酶a合成酶(ACS)来增强细胞的乙酸清除能力)。野生型和重组细胞以葡萄糖或甘油为碳源,在Erlenmeyer烧瓶中以200 rpm和37℃搅拌,在最低培养基中培养。在培养过程中采集样品,采用高效液相色谱法定量测定有机酸产量和碳源消耗。通过培养液光密度(OD 600 nm)测定细胞生长情况。结果表明,碳源对鼠伤寒沙门氏菌细胞的副产物排泄起着重要作用,表明对这两种菌株来说,甘油的使用大大减少了乙酸的产量。ACS的过表达也减少了乙酸的积累,因为该酶对排泄的乙酸起同化作用。在所有条件下,甘油中培养的重组细胞效果最好。与其他实验中记录的平均值相比,生物质产量增加了40%,而乙酸积累减少了50%以上。
{"title":"Stem cell therapy for the treatment of severe tissue damage after radiation exposure","authors":"Eliana Mariño","doi":"10.4172/2155-952X.C1.059","DOIUrl":"https://doi.org/10.4172/2155-952X.C1.059","url":null,"abstract":"I recent years, the application of attenuated strains of Salmonella spp. has been widely investigated for the development of various biotechnological products, especially vaccines. However, the industrial production of these compounds is hampered by metabolic constraints presented by Salmonella cells, which naturally produce high amounts of growth inhibitor metabolites, mainly acetate. To deal with this problem, two different approaches were evaluated in the present work: Changing culture conditions (carbon source evaluation) and implementing genetic modifications (enhancement of cell’s acetate scavenging capabilities by overexpression of acetyl-CoA synthetase (ACS)). Wild type and recombinant cells were cultured in minimal medium with glucose or glycerol as carbon source in Erlenmeyer flasks agitated at 200 rpm and 37 oC. Samples were collected during cultivation and analyzed by HPLC to quantify organic acids production and the carbon source consumption. Cellular growth was assessed by optical density readings (OD 600 nm) of the culture broth. The results showed that the carbon source plays an important role on byproducts excretion by S. typhimurium cells, indicating that for both strains acetate production is greatly reduced using glycerol. The overexpression of ACS also reduced the acetate accumulation as this enzyme acted assimilating the excreted acetate. From all the conditions studied, the best results were obtained by the recombinant cells cultured in glycerol. An increase of 40% of biomass production was achieved, while the acetate accumulation was reduced by more than 50% in comparison to the average values registered in the other experiments.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"137 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2016-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89149809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Design of biosimilars to overcome the limitations of neuromodulation of the inflammation 生物仿制药的设计克服了炎症神经调节的局限性
Pub Date : 2016-09-02 DOI: 10.4172/2155-952X.C1.057
L. Ulloa
S glucose, cholesterol, triglyceride and HbA1C monitoring are all valuable tools in the health management of the aging population especially given the increase in diabetes and cardiovascular diseases. Even for glucose monitoring, the challenges in obtaining sufficiently accurate and reliable measurements are so significant. None of them meet the even more stringent requirement of ISO 2012 and FDA. Because inaccurate systems bear the risk of false therapeutic decisions, rising health care costs, there is an urgent compelling need for significantly enhanced BG monitoring systems for PC applications. POC tests for other biomedically important analytes are generally even less accurate. The overall goal of the research in our laboratory and laboratories of our collaborators at Stanford, UC Berkeley, MIT and Rice is to develop new sensor platforms that will provide increased sensitivity and accuracy in point of care situations. Graphene-based platforms decorated by a probe protein enhance the sensitivity of pristine single layer grapheme multi-fold and offers a very accurate determination of critical analytes in the blood and other body fluids including saliva. The proposed system uses advanced graphene, Boron-doped graphene and carbon-nanotube-based sensors to transduce enzymatic binding into electrical signals that can be read and processed by a stand-alone system or even a cell-phone. These new biosensor chips will be housed in a plastic microfluidic system for sample acquisition, preparation and distribution to four separate biosensing chips. This approach will improve accuracy because it reduces operator errors, calibration problems and strip-to-strip variability, while increasing sensor sensitivity/specificity with the option to use redundant sensors for improved statistical confidence.
{"title":"Design of biosimilars to overcome the limitations of neuromodulation of the inflammation","authors":"L. Ulloa","doi":"10.4172/2155-952X.C1.057","DOIUrl":"https://doi.org/10.4172/2155-952X.C1.057","url":null,"abstract":"S glucose, cholesterol, triglyceride and HbA1C monitoring are all valuable tools in the health management of the aging population especially given the increase in diabetes and cardiovascular diseases. Even for glucose monitoring, the challenges in obtaining sufficiently accurate and reliable measurements are so significant. None of them meet the even more stringent requirement of ISO 2012 and FDA. Because inaccurate systems bear the risk of false therapeutic decisions, rising health care costs, there is an urgent compelling need for significantly enhanced BG monitoring systems for PC applications. POC tests for other biomedically important analytes are generally even less accurate. The overall goal of the research in our laboratory and laboratories of our collaborators at Stanford, UC Berkeley, MIT and Rice is to develop new sensor platforms that will provide increased sensitivity and accuracy in point of care situations. Graphene-based platforms decorated by a probe protein enhance the sensitivity of pristine single layer grapheme multi-fold and offers a very accurate determination of critical analytes in the blood and other body fluids including saliva. The proposed system uses advanced graphene, Boron-doped graphene and carbon-nanotube-based sensors to transduce enzymatic binding into electrical signals that can be read and processed by a stand-alone system or even a cell-phone. These new biosensor chips will be housed in a plastic microfluidic system for sample acquisition, preparation and distribution to four separate biosensing chips. This approach will improve accuracy because it reduces operator errors, calibration problems and strip-to-strip variability, while increasing sensor sensitivity/specificity with the option to use redundant sensors for improved statistical confidence.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"52 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2016-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76347323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
EpCAM and claudins as cancer biomarkers in ovarian and colon cancer EpCAM和claudin作为卵巢癌和结肠癌的生物标志物
Pub Date : 2016-08-30 DOI: 10.4172/2155-952X.C1.053
Zehra Tavsan Deniz Erkan, H. Kayali
{"title":"EpCAM and claudins as cancer biomarkers in ovarian and colon cancer","authors":"Zehra Tavsan Deniz Erkan, H. Kayali","doi":"10.4172/2155-952X.C1.053","DOIUrl":"https://doi.org/10.4172/2155-952X.C1.053","url":null,"abstract":"","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"45 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2016-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72647804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Lignin: A natural antioxidant isolated via selective extraction from lignocellulose feedstock to be used in packaging applications 木质素:从木质纤维素原料中选择性提取的天然抗氧化剂,用于包装应用
Pub Date : 2016-08-30 DOI: 10.4172/2155-952X.C1.051
M. Schulze
{"title":"Lignin: A natural antioxidant isolated via selective extraction from lignocellulose feedstock to be used in packaging applications","authors":"M. Schulze","doi":"10.4172/2155-952X.C1.051","DOIUrl":"https://doi.org/10.4172/2155-952X.C1.051","url":null,"abstract":"","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"06 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2016-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74963611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Potential human glioblastoma cancer markers identified with nanobody-based reverse proteomic approach 基于纳米体的反向蛋白质组学方法鉴定潜在的人类胶质母细胞瘤癌症标志物
Pub Date : 2016-08-24 DOI: 10.4172/2155-952X.C1.054
R. Komel
Biological control, the use of antagonistic organisms that interfere with plant pathogens represent an ecological approach to overcome the problems caused by hazardous chemical pesticides applied in plant protection. The mycoparasite Trichoderma is an efficient bio-control agent excreting extracellular chitinases, β-1-3 glucanases and proteases. Cloning these genes into plants can induce their resistance to diseases. Moreover, this bio-control agent can induce systemic resistance (ISR) to diseases by priming the expression of several plant defense related genes which enables Trichoderma treated plants to be more resistant to subsequent pathogen infection. Root colonization by Trichoderma strains results in massive changes in plant metabolism leading to accumulation of antimicrobial compounds in the whole plant. Studies have demonstrated that Trichoderma can ameliorate also plant performance in the presence of various abiotic stresses such as drought, salinity and heavy metals. Understanding the molecular basis of the diverse modes of action Trichoderma can lead to a better environmental-friendly control of plant diseases.
{"title":"Potential human glioblastoma cancer markers identified with nanobody-based reverse proteomic approach","authors":"R. Komel","doi":"10.4172/2155-952X.C1.054","DOIUrl":"https://doi.org/10.4172/2155-952X.C1.054","url":null,"abstract":"Biological control, the use of antagonistic organisms that interfere with plant pathogens represent an ecological approach to overcome the problems caused by hazardous chemical pesticides applied in plant protection. The mycoparasite Trichoderma is an efficient bio-control agent excreting extracellular chitinases, β-1-3 glucanases and proteases. Cloning these genes into plants can induce their resistance to diseases. Moreover, this bio-control agent can induce systemic resistance (ISR) to diseases by priming the expression of several plant defense related genes which enables Trichoderma treated plants to be more resistant to subsequent pathogen infection. Root colonization by Trichoderma strains results in massive changes in plant metabolism leading to accumulation of antimicrobial compounds in the whole plant. Studies have demonstrated that Trichoderma can ameliorate also plant performance in the presence of various abiotic stresses such as drought, salinity and heavy metals. Understanding the molecular basis of the diverse modes of action Trichoderma can lead to a better environmental-friendly control of plant diseases.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"110 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2016-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77161322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computational design of yeast synthetic gene circuits 酵母合成基因电路的计算设计
Pub Date : 2016-08-24 DOI: 10.4172/2155-952X.C1.056
Mario Andrea Marchisio
I this work we firstly proposed lateral-flow assay combined with primer extension (PEXT) and gold nanoparticles to SNP genotyping of tmigd1 gene in Tsaiya duck which has advantages of easy operation, cost effective and time saving. The gold nanoparticles were tailed with thiol-(dT)30 using salt-aging method at 25 oC and used as label of lateral-flow assay. The lateral-flow device is mainly composed of test and control zone on the nitrocellulose membrane containing streptavidin and d(A)30, respectively. When the specific SNP exists, the corresponding primers can be extended, and then the reaction product will be able to be captured by streptavidin in the test zone due to the introduction of biotin-dUTP into the reaction product during PEXT. Gold nanoparticles will hybridize with reaction product to make it become visible. Here we reported the optimized parameters of Mg2+ in PEXT reaction and streptavidin on membranes to detect the signal specificity. In addition, it is found that increasing amount of PCR product and PEXT reaction cycle number result in the increase of the signal intensity without observable change of signal specificity.
在本研究中,我们首次提出了结合引物延伸(pett)和金纳米颗粒的横向流动法对柴鸭tmigd1基因进行SNP分型,该方法具有操作简单、成本低、省时等优点。采用25℃盐老化法,用巯基-(dT)30对金纳米颗粒进行尾化处理,作为横向流动实验的标记物。横向流动装置主要由含链霉亲和素和d(A)30的硝化纤维素膜上的试验区和控制区组成。当特定SNP存在时,相应的引物可以被延长,然后在PEXT过程中,由于生物素- dutp的引入,反应产物可以在测试区被链霉亲和素捕获。金纳米粒子将与反应产物杂交,使其变得可见。本文报道了PEXT反应中Mg2+和膜上链霉亲和素的优化参数,以检测信号特异性。此外,我们发现增加PCR产物的数量和pex反应周期数会导致信号强度的增加,但信号特异性没有明显变化。
{"title":"Computational design of yeast synthetic gene circuits","authors":"Mario Andrea Marchisio","doi":"10.4172/2155-952X.C1.056","DOIUrl":"https://doi.org/10.4172/2155-952X.C1.056","url":null,"abstract":"I this work we firstly proposed lateral-flow assay combined with primer extension (PEXT) and gold nanoparticles to SNP genotyping of tmigd1 gene in Tsaiya duck which has advantages of easy operation, cost effective and time saving. The gold nanoparticles were tailed with thiol-(dT)30 using salt-aging method at 25 oC and used as label of lateral-flow assay. The lateral-flow device is mainly composed of test and control zone on the nitrocellulose membrane containing streptavidin and d(A)30, respectively. When the specific SNP exists, the corresponding primers can be extended, and then the reaction product will be able to be captured by streptavidin in the test zone due to the introduction of biotin-dUTP into the reaction product during PEXT. Gold nanoparticles will hybridize with reaction product to make it become visible. Here we reported the optimized parameters of Mg2+ in PEXT reaction and streptavidin on membranes to detect the signal specificity. In addition, it is found that increasing amount of PCR product and PEXT reaction cycle number result in the increase of the signal intensity without observable change of signal specificity.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"83 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2016-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72726948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
SSR Marker-based Genetic Diversity Analysis of Tidal and Flood Prone Areas in Rice ( Oryza sativa L.) 基于SSR标记的水稻潮洪易发区遗传多样性分析
Pub Date : 2016-08-11 DOI: 10.4172/2155-952X.1000241
A. Masuduzzaman, M. Haque, M. Ahmed, A. Mohapatra
One hundred and sixty rice varieties from the tidal and flood prone areas of south and south East Asian countries were analyzed. Samples sizes were: 50 varieties from Bangladesh (deepwater, tidal and flood prone rice and modern varieties), 14 varieties from India (flood prone rice), 16 varieties from Sri Lanka (flood prone rice), 7 varieties from Vietnam (tidal varieties), 69 varieties from Indonesia (tidal varieties) and 4 check varieties from IRRI. All 30 primer pairs created polymorphic bands among the 160 rice varieties from flood and tidal prone areas, which indicated that the microsatellites used were suitable for diversity analysis. A total of 337 alleles were detected with an average of 11 alleles per locus and the number of alleles per locus varied from 4 to 21. The highest PIC values were observed for the primer of RM474 (0.91), followed by RM5 (0.82), RM484 (0.81), RM214 (0.81), and RM19 (0.79). Cluster analysis divided the genotypes into four main clusters and six sub-clusters based on geographical origins and ecotypes. Microsatellite clustering (over 30 polymorphic loci) and submergence screening data indicated greater genetic diversity among 160 genotypes for molecular loci and for submergence tolerance. Tolerant genotypes in Cluster-1 are expected to have different tolerance genes. Finding relationship between tolerance and country of origin, highly tolerant varieties (FR13A and FR43B) were found from east India. Genetic diversity analysis among flood prone rice will be useful for identifying the varieties having maximum diversity with submergence tolerance and selected varieties will be useful for further studies.
对来自南亚和东南亚国家潮汐和洪水易发地区的160个水稻品种进行了分析。样本数量为:孟加拉国50个品种(深水、潮汐和洪涝易发水稻和现代品种)、印度14个品种(洪涝易发水稻)、斯里兰卡16个品种(洪涝易发水稻)、越南7个品种(潮汐易发水稻)、印度尼西亚69个品种(潮汐易发水稻)和国际水稻研究所4个对照品种。30对引物在洪潮易发地区的160个水稻品种中均形成多态性条带,表明微卫星可以用于多样性分析。共检测到337个等位基因,平均每个位点11个,每个位点的等位基因数从4个到21个不等。引物中PIC值最高的是RM474(0.91),其次是RM5(0.82)、RM484(0.81)、RM214(0.81)和RM19(0.79)。聚类分析根据地理来源和生态型将其分为4个主聚类和6个亚聚类。微卫星聚类(超过30个多态性位点)和淹水筛选数据表明,160个基因型在分子位点和淹水耐受性方面具有更大的遗传多样性。Cluster-1中的耐受基因型可能具有不同的耐受基因。发现耐受性与原产国之间的关系,在印度东部发现了高耐受性品种(FR13A和FR43B)。易涝水稻的遗传多样性分析将有助于鉴定耐淹多样性最大的品种,并为今后的研究提供参考。
{"title":"SSR Marker-based Genetic Diversity Analysis of Tidal and Flood Prone Areas in Rice ( Oryza sativa L.)","authors":"A. Masuduzzaman, M. Haque, M. Ahmed, A. Mohapatra","doi":"10.4172/2155-952X.1000241","DOIUrl":"https://doi.org/10.4172/2155-952X.1000241","url":null,"abstract":"One hundred and sixty rice varieties from the tidal and flood prone areas of south and south East Asian countries were analyzed. Samples sizes were: 50 varieties from Bangladesh (deepwater, tidal and flood prone rice and modern varieties), 14 varieties from India (flood prone rice), 16 varieties from Sri Lanka (flood prone rice), 7 varieties from Vietnam (tidal varieties), 69 varieties from Indonesia (tidal varieties) and 4 check varieties from IRRI. All 30 primer pairs created polymorphic bands among the 160 rice varieties from flood and tidal prone areas, which indicated that the microsatellites used were suitable for diversity analysis. A total of 337 alleles were detected with an average of 11 alleles per locus and the number of alleles per locus varied from 4 to 21. The highest PIC values were observed for the primer of RM474 (0.91), followed by RM5 (0.82), RM484 (0.81), RM214 (0.81), and RM19 (0.79). Cluster analysis divided the genotypes into four main clusters and six sub-clusters based on geographical origins and ecotypes. Microsatellite clustering (over 30 polymorphic loci) and submergence screening data indicated greater genetic diversity among 160 genotypes for molecular loci and for submergence tolerance. Tolerant genotypes in Cluster-1 are expected to have different tolerance genes. Finding relationship between tolerance and country of origin, highly tolerant varieties (FR13A and FR43B) were found from east India. Genetic diversity analysis among flood prone rice will be useful for identifying the varieties having maximum diversity with submergence tolerance and selected varieties will be useful for further studies.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"1 1","pages":"1-9"},"PeriodicalIF":0.0,"publicationDate":"2016-08-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81944267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
An Approach to Computer Aided Drug Design of some Bioactive Cinnamoyl Hydrazones, In Silico and Docking Studies as Possible COX-2 Selective Inhibitors 一些生物活性肉桂酰腙的计算机辅助药物设计方法,作为COX-2选择性抑制剂的硅和对接研究
Pub Date : 2016-08-09 DOI: 10.4172/2155-952X.1000240
B. Banu, G. Rajitha, K. Bharathi
Recently structural analogue-based drug discovery has become an important tool for designing more potent drugs. This study uses SAR, pharmacophore study and structural analogue-based novel drugs to design selective inhibitor molecules using internet-based tools. Substituted acyl hydrazones are known for wide variety of biological activities, such as analgesic, anti–inflammatory, anti-microbial, anti-convulsant, anti-platelet, anti-tubercular, antiviral, schistomiasis and anti-tumoral activities. In the last decade several cinnamic acid derivatives were reported as potent lipoxygenase inhibitors, antioxidants and anti-inflammatory agents. We found it interesting to combine these particular molecules and design cinnamoyl hydrazones, a series of N-[(1E)-2-substituted phenyl-1-{N'-[(1E)-phenyl methylidene] hydrazine carbonyl} eth-1-en-1-yl] benzamides. The designed compounds were predicted for their drug likeness and oral bioavailability. Selected compounds were docked with COX-2 enzyme and found that they were showing similar interactions as that of SC-558, 1000 time selective standard COX-2 inhibitor.
近年来,基于结构类似物的药物发现已成为设计更有效药物的重要工具。本研究利用SAR、药效团研究和基于结构类似物的新型药物,利用互联网工具设计选择性抑制剂分子。取代酰基腙具有广泛的生物活性,如镇痛、抗炎、抗微生物、抗惊厥、抗血小板、抗结核、抗病毒、血吸虫病和抗肿瘤活性。在过去的十年中,几种肉桂酸衍生物被报道为有效的脂氧合酶抑制剂,抗氧化剂和抗炎剂。我们发现结合这些特殊的分子并设计肉桂酰腙是很有趣的,这是一系列N-[(1E)-2-取代苯基-1-{N'-[(1E)-苯基甲基]肼羰基}-1-烯-1-基]苯酰胺。对所设计的化合物进行了药物相似性和口服生物利用度的预测。选定的化合物与COX-2酶对接,发现它们表现出与sc - 558,1000倍选择性标准COX-2抑制剂相似的相互作用。
{"title":"An Approach to Computer Aided Drug Design of some Bioactive Cinnamoyl Hydrazones, In Silico and Docking Studies as Possible COX-2 Selective Inhibitors","authors":"B. Banu, G. Rajitha, K. Bharathi","doi":"10.4172/2155-952X.1000240","DOIUrl":"https://doi.org/10.4172/2155-952X.1000240","url":null,"abstract":"Recently structural analogue-based drug discovery has become an important tool for designing more potent drugs. This study uses SAR, pharmacophore study and structural analogue-based novel drugs to design selective inhibitor molecules using internet-based tools. Substituted acyl hydrazones are known for wide variety of biological activities, such as analgesic, anti–inflammatory, anti-microbial, anti-convulsant, anti-platelet, anti-tubercular, antiviral, schistomiasis and anti-tumoral activities. In the last decade several cinnamic acid derivatives were reported as potent lipoxygenase inhibitors, antioxidants and anti-inflammatory agents. We found it interesting to combine these particular molecules and design cinnamoyl hydrazones, a series of N-[(1E)-2-substituted phenyl-1-{N'-[(1E)-phenyl methylidene] hydrazine carbonyl} eth-1-en-1-yl] benzamides. The designed compounds were predicted for their drug likeness and oral bioavailability. Selected compounds were docked with COX-2 enzyme and found that they were showing similar interactions as that of SC-558, 1000 time selective standard COX-2 inhibitor.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"17 1","pages":"1-8"},"PeriodicalIF":0.0,"publicationDate":"2016-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74031217","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Surface Immobilization of Antibacterial Quorum Sensing Inhibitors by Photochemical Activation 光化学活化表面固定化抗菌群体感应抑制剂
Pub Date : 2016-08-06 DOI: 10.4172/2155-952X.1000238
Aditi Taunk, K. Ho, George Isk, Er, M. Willcox, N. Kumar
Infection of implanted medical devices is one of the major causes of nosocomial infections. A significant proportion of the devices become colonized by bacterial biofilms, thus resulting in high morbidity and risk of mortality. This study focuses on the non-specific covalent attachment of potent quorum sensing (QS) and biofilm inhibiting compounds, furanones (FUs) and dihydropyrrol-2-ones (DHPs), onto glass surfaces by azide/nitrene chemistry. The attachment of FUs and DHPs was confirmed by X-ray photoelectron spectroscopy (XPS) and contact angle measurements. The modified surfaces were then assessed for their antibacterial efficacy against Staphylococcus aureus and Pseudomonas aeruginosa using confocal laser scanning microscopy (CLSM). Both FU and DHP coated surfaces were able to significantly reduce bacterial adhesion (p<0.001) with p-bromophenyl substituted DHP giving maximum reductions of up to 93% and 71% against S. aureus and P. aeruginosa, respectively. Therefore, photoimmobilization of QS inhibitors is an effective technique to produce novel antibacterial biomaterial surfaces.
植入式医疗器械感染是医院感染的主要原因之一。很大一部分装置被细菌生物膜定植,从而导致高发病率和死亡风险。本研究主要研究了有效群体感应(QS)和生物膜抑制化合物呋喃酮(FUs)和二氢吡咯-2-酮(DHPs)通过叠氮化物/亚硝烯化学在玻璃表面的非特异性共价附着。通过x射线光电子能谱(XPS)和接触角测量证实了FUs和DHPs的附着。然后用共聚焦激光扫描显微镜(CLSM)评估改性表面对金黄色葡萄球菌和铜绿假单胞菌的抗菌效果。FU和DHP涂层表面都能显著降低细菌粘附(p<0.001),对溴苯基取代DHP对金黄色葡萄球菌和铜绿假单胞菌的最大降低率分别高达93%和71%。因此,光固定化QS抑制剂是制备新型抗菌生物材料表面的有效技术。
{"title":"Surface Immobilization of Antibacterial Quorum Sensing Inhibitors by Photochemical Activation","authors":"Aditi Taunk, K. Ho, George Isk, Er, M. Willcox, N. Kumar","doi":"10.4172/2155-952X.1000238","DOIUrl":"https://doi.org/10.4172/2155-952X.1000238","url":null,"abstract":"Infection of implanted medical devices is one of the major causes of nosocomial infections. A significant proportion of the devices become colonized by bacterial biofilms, thus resulting in high morbidity and risk of mortality. This study focuses on the non-specific covalent attachment of potent quorum sensing (QS) and biofilm inhibiting compounds, furanones (FUs) and dihydropyrrol-2-ones (DHPs), onto glass surfaces by azide/nitrene chemistry. The attachment of FUs and DHPs was confirmed by X-ray photoelectron spectroscopy (XPS) and contact angle measurements. The modified surfaces were then assessed for their antibacterial efficacy against Staphylococcus aureus and Pseudomonas aeruginosa using confocal laser scanning microscopy (CLSM). Both FU and DHP coated surfaces were able to significantly reduce bacterial adhesion (p<0.001) with p-bromophenyl substituted DHP giving maximum reductions of up to 93% and 71% against S. aureus and P. aeruginosa, respectively. Therefore, photoimmobilization of QS inhibitors is an effective technique to produce novel antibacterial biomaterial surfaces.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"16 1","pages":"1-6"},"PeriodicalIF":0.0,"publicationDate":"2016-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88948956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Additional Resistance to Moxifloxacin and Levofloxacin among MDR-TB Patients with Base Line Resistance to Ofloxacin at a Reference Laboratory 参考实验室对氧氟沙星基线耐药的耐多药结核病患者对莫西沙星和左氧氟沙星的额外耐药性
Pub Date : 2016-08-06 DOI: 10.4172/2155-952X.1000239
V. Ahmad, Z. Sidiq, H. Vashishtha, M. Hanif, Divy Shrivastsava, K. Dwivedi, S. Saini, K. Chopra, V. K. Badireddy, J. Bhalla
Fluoroquinolones are among the most promising antibiotic drugs for Tuberculosis treatment. Although high levels of fluoroquinolone resistance have been detected among many common bacterial pathogens, little is known about the fluoroquinolone resistance of M. tuberculosis especially at the baseline. The present study was thus aimed at determining the profile of resistance against two newer generation fluoroquinolones-Moxifloxacin and Levofloxacin in MDR-TB isolates with baseline resistance to ofloxacin. A total number of 65 isolates (4 XDR and 61 pre-XDR) were subjected to susceptible testing against levofloxacin and two (higher and lower) concentrations of moxifloxacin. 72.3% in addition to being resistant to ofloxacin were also resistant to levofloxacin and lower concentration of moxifloxacin. The increasing use of FQs for the treatment of other bacterial infections has led to increasing resistance to these antimicrobials. Newer generation FQs are promising drugs in the treatment of drugresistant Tuberculosis but care should be taken regarding the rationale use of these drugs for the treatment of other diseases especially when other drugs are available.
氟喹诺酮类药物是治疗结核病最有前途的抗生素药物之一。虽然在许多常见的细菌病原体中检测到高水平的氟喹诺酮耐药性,但对结核分枝杆菌的氟喹诺酮耐药性知之甚少,特别是在基线。因此,本研究旨在确定对氧氟沙星基线耐药的耐多药结核分离株对两种新一代氟喹诺酮类药物——莫西沙星和左氧氟沙星的耐药情况。共对65株菌株(4株XDR和61株XDR前菌株)进行左氧氟沙星和两种(高、低)浓度莫西沙星的敏感试验。72.3%的患者除对氧氟沙星耐药外,还对左氧氟沙星和低浓度莫西沙星耐药。FQs越来越多地用于治疗其他细菌感染,导致对这些抗菌素的耐药性增加。新一代FQs是治疗耐药结核病的有希望的药物,但应注意使用这些药物治疗其他疾病的理由,特别是在有其他药物可用的情况下。
{"title":"Additional Resistance to Moxifloxacin and Levofloxacin among MDR-TB Patients with Base Line Resistance to Ofloxacin at a Reference Laboratory","authors":"V. Ahmad, Z. Sidiq, H. Vashishtha, M. Hanif, Divy Shrivastsava, K. Dwivedi, S. Saini, K. Chopra, V. K. Badireddy, J. Bhalla","doi":"10.4172/2155-952X.1000239","DOIUrl":"https://doi.org/10.4172/2155-952X.1000239","url":null,"abstract":"Fluoroquinolones are among the most promising antibiotic drugs for Tuberculosis treatment. Although high levels of fluoroquinolone resistance have been detected among many common bacterial pathogens, little is known about the fluoroquinolone resistance of M. tuberculosis especially at the baseline. The present study was thus aimed at determining the profile of resistance against two newer generation fluoroquinolones-Moxifloxacin and Levofloxacin in MDR-TB isolates with baseline resistance to ofloxacin. A total number of 65 isolates (4 XDR and 61 pre-XDR) were subjected to susceptible testing against levofloxacin and two (higher and lower) concentrations of moxifloxacin. 72.3% in addition to being resistant to ofloxacin were also resistant to levofloxacin and lower concentration of moxifloxacin. The increasing use of FQs for the treatment of other bacterial infections has led to increasing resistance to these antimicrobials. Newer generation FQs are promising drugs in the treatment of drugresistant Tuberculosis but care should be taken regarding the rationale use of these drugs for the treatment of other diseases especially when other drugs are available.","PeriodicalId":15156,"journal":{"name":"Journal of biotechnology & biomaterials","volume":"20 1","pages":"1-3"},"PeriodicalIF":0.0,"publicationDate":"2016-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82369934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
期刊
Journal of biotechnology & biomaterials
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1