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Novel hybrids of 1,2,3-triazole-benzoxazole: design, synthesis, and assessment of DprE1 enzyme inhibitors using fluorometric assay and computational analysis. 1,2,3-三唑-苯并恶唑的新型杂交化合物:利用荧光测定法和计算分析设计、合成和评估 DprE1 酶抑制剂。
IF 5.6 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-09-27 DOI: 10.1080/14756366.2024.2403744
Manisha Singh, Sarah M Batt, Christian S C Canales, Fernando R Pavan, Sethu Arun Kumar, Handattu S Akshatha, Meduri Bhagyalalitha, Karthik G Pujar, Durgesh Bidye, Gurubasavaraj V Pujar, Gurdyal S Besra

Decaprenylphosphoryl-β-D-ribose-oxidase (DprE1), a subunit of the essential decaprenylphosphoribose-2'-epimerase, plays a crucial role in the synthesis of cell wall arabinan components in mycobacteria, including the pathogen responsible for tuberculosis, Mycobacterium tuberculosis. In this study, we designed, synthesised, and evaluated 15 (BOK-1-BOK-10 and BOP-1-BOP-5) potential inhibitors of DprE1 from a series of 1,2,3-triazole ligands using a validated DprE1 inhibition assay. Two compounds, BOK-2 and BOK-3, demonstrated significant inhibition with IC50 values of 2.2 ± 0.1 and 3.0 ± 0.6 μM, respectively, whereas the standard drug (TCA-1) showed inhibition at 3.0 ± 0.2 μM. Through molecular modelling and dynamic simulations, we explored the structural relationships between selected 1,2,3-triazole compounds and DprE1, revealing key features for effective drug-target interactions. This study introduces a novel approach for designing ligands against DprE1, offering a potential therapeutic strategy for tuberculosis treatment.

脱萘基磷酰-β-D-核糖氧化酶(DprE1)是重要的脱萘基磷酰核糖-2'-环合酶的一个亚基,在分枝杆菌(包括结核病的病原体结核分枝杆菌)细胞壁阿拉伯聚糖成分的合成过程中发挥着至关重要的作用。在这项研究中,我们设计、合成并评估了 15 种(BOK-1-BOK-10 和 BOP-1-BOP-5)潜在的 DprE1 抑制剂,这些抑制剂来自一系列 1,2,3-三唑配体,并采用了有效的 DprE1 抑制试验。BOK-2 和 BOK-3 这两个化合物具有显著的抑制作用,其 IC50 值分别为 2.2 ± 0.1 和 3.0 ± 0.6 μM,而标准药物(TCA-1)的抑制作用为 3.0 ± 0.2 μM。通过分子建模和动态模拟,我们探索了所选 1,2,3-三唑化合物与 DprE1 之间的结构关系,揭示了药物与靶标有效相互作用的关键特征。这项研究介绍了一种设计抗 DprE1 配体的新方法,为结核病治疗提供了一种潜在的治疗策略。
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引用次数: 0
Discovering a novel dual specificity tyrosine-phosphorylation-regulated kinase 1A (DYRK1A) inhibitor and its impact on tau phosphorylation and amyloid-β formation. 发现新型双特异性酪氨酸磷酸化调节激酶 1A (DYRK1A) 抑制剂及其对 tau 磷酸化和淀粉样蛋白-β形成的影响
IF 5.6 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-04 DOI: 10.1080/14756366.2024.2418470
Huang-Ju Tu, Min-Wu Chao, Cheng-Chung Lee, Chao-Shiang Peng, Yi-Wen Wu, Tony Eight Lin, Yu-Wei Chang, Shih-Chung Yen, Kai-Cheng Hsu, Shiow-Lin Pan, Wei-Chun HuangFu

Dual-specificity tyrosine-regulated kinase 1 A (DYRK1A) is crucial in neurogenesis, synaptogenesis, and neuronal functions. Its dysregulation is linked to neurodegenerative disorders like Down syndrome and Alzheimer's disease. Although the development of DYRK1A inhibitors has significantly advanced in recent years, the selectivity of these drugs remains a critical challenge, potentially impeding further progress. In this study, we utilised structure-based virtual screening (SBVS) from NCI library to discover novel DYRK1A inhibitors. The top-ranked compounds were then validated through enzymatic assays to assess their efficacy towards DYRK1A. Among them, NSC361563 emerged as a potent and selective DYRK1A inhibitor. It was shown to decrease tau phosphorylation at multiple sites, thereby enhancing tubulin stability. Moreover, NSC361563 diminished the formation of amyloid β and offered neuroprotective benefits against amyloid β-induced toxicity. Our research highlights the critical role of selective DYRK1A inhibitors in treating neurodegenerative diseases and presents a promising starting point for the development of targeted therapies.

双特异性酪氨酸调控激酶 1 A(DYRK1A)在神经发生、突触生成和神经元功能中至关重要。它的失调与唐氏综合征和阿尔茨海默病等神经退行性疾病有关。尽管近年来 DYRK1A 抑制剂的开发取得了显著进展,但这些药物的选择性仍然是一个关键挑战,可能会阻碍进一步的研究进展。在这项研究中,我们利用基于结构的虚拟筛选(SBVS)从 NCI 库中发现了新型 DYRK1A 抑制剂。然后通过酶学实验验证了排名靠前的化合物,以评估它们对 DYRK1A 的疗效。其中,NSC361563 是一种强效且具有选择性的 DYRK1A 抑制剂。研究表明,它能降低多个位点的 tau 磷酸化,从而增强微管蛋白的稳定性。此外,NSC361563还能减少淀粉样β的形成,并对淀粉样β诱导的毒性提供神经保护作用。我们的研究强调了选择性 DYRK1A 抑制剂在治疗神经退行性疾病中的关键作用,并为开发靶向疗法提供了一个很有前景的起点。
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引用次数: 0
Novel alloxazine analogues: design, synthesis, and antitumour efficacy enhanced by kinase screening, molecular docking, and ADME studies. 新型烯丙基嗪类似物:通过激酶筛选、分子对接和 ADME 研究提高设计、合成和抗肿瘤功效。
IF 5.6 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-17 DOI: 10.1080/14756366.2024.2398551
Doaa Samaha,Sawsan Mahmoud,Mosaad Sayed Mohamed,Rokaia S Abdullah,Nageh A Abou Taleb,Tomohisa Nagamatsu,Hamed I Ali
This study describes the development of novel alloxazine analogues as potent antitumor agents with enhanced selectivity for tumour cells. Twenty-nine out of 45 newly compounds were investigated in vitro for their growth inhibitory activities, against two human tumour cell lines, namely, the human T-cell acute lymphoblastoid leukaemia cell line (CCRF-HSB-2) and human oral epidermoid carcinoma cell line (KB), and the antitumor agent "Ara-C" was used as a positive reference in this investigation. Compounds 9e and 10J were the highest among their analogues, against both tumour cell lines (CCRF-HSB-2 and KB). Correlation analyses demonstrated a strong relationship between the IC50 values and AutoDock binding free energy or calculated inhibition (Ki). The study delves into structure-activity relationships (SARs) through advanced modelling tools integrated with structure-based drug design (SBDD) using GOLD 5.2.2, AutoDock 4.2, and Accelrys Discovery Studio 3.5. Physicochemical properties, pharmacokinetics, drug-likeness, and toxicity predictions of the most potent alloxazine derivatives were conducted using ProTox-II and Swiss ADME for effective antitumor agents with improved selectivity.
本研究介绍了新型烯丙基嗪类似物作为强效抗肿瘤药的开发情况,它们对肿瘤细胞的选择性更强。研究人员对 45 个新化合物中的 29 个进行了体外研究,以检测它们对两种人类肿瘤细胞系(即人类 T 细胞急性淋巴母细胞白血病细胞系(CCRF-HSB-2)和人类口腔表皮样癌细胞系(KB))的生长抑制活性,并以抗肿瘤药物 "Ara-C "作为阳性参照物。在其类似物中,化合物 9e 和 10J 对两种肿瘤细胞系(CCRF-HSB-2 和 KB)的抗肿瘤能力最强。相关分析表明,IC50 值与 AutoDock 结合自由能或计算抑制率(Ki)之间存在密切关系。该研究使用 GOLD 5.2.2、AutoDock 4.2 和 Accelrys Discovery Studio 3.5,通过与基于结构的药物设计(SBDD)集成的先进建模工具深入研究了结构-活性关系(SARs)。使用 ProTox-II 和 Swiss ADME 对最有效的烯丙基嗪衍生物的理化性质、药代动力学、药物相似性和毒性进行了预测,以寻找具有更好选择性的有效抗肿瘤药物。
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引用次数: 0
Challenging the Biginelli scaffold to surpass the first line antitubercular drugs: Mycobacterium tuberculosis thymidine monophosphate kinase (TMPKmt) inhibition activity and molecular modelling studies 挑战 Biginelli 支架,超越一线抗结核药物:结核分枝杆菌胸苷单磷酸激酶(TMPKmt)抑制活性和分子模型研究
IF 5.6 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-11 DOI: 10.1080/14756366.2024.2386668
Mai S. El-Shoukrofy, Amal Atta, Salwa Fahmy, Dharmarajan Sriram, Michael G. Shehat, Ibrahim M. Labouta, Mona A. Mahran
New Biginelli adducts were rationalised, via the introduction of selected anti-tubercular (TB) pharmacophores into the dihydropyrimidine (DHPM) ring of deoxythymidine monophosphate (dTMP), the natu...
通过在单磷酸脱氧胸苷(dTMP)的二氢嘧啶(DHPM)环(天然...
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引用次数: 0
Synthesis and in vitro evaluation of benzo[b]thiophene-3-carboxylic acid 1,1-dioxide derivatives as anticancer agents targeting the RhoA/ROCK pathway. 苯并[b]噻吩-3-羧酸 1,1-二氧化物衍生物作为靶向 RhoA/ROCK 通路的抗癌剂的合成和体外评估。
IF 5.6 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-11 DOI: 10.1080/14756366.2024.2390911
Jinhao Liang,Jin Huang,Jianzhan Yang,Weihong Liang,Haoxiang Li,Yunshan Wu,Bo Liu
Rho family GTPases regulate cellular processes and promote tumour growth and metastasis; thus, RhoA is a potential target for tumour metastasis inhibition. However, limited progress has been made in the development of RhoA targeting anticancer drugs. Here, we synthesised benzo[b]thiophene-3-carboxylic acid 1,1-dioxide derivatives based on a covalent inhibitor of RhoA (DC-Rhoin), reported in our previous studies. The observed structure-activity relationship (contributed by carboxamide in C-3 and 1-methyl-1H-pyrazol in C-5) enhanced the anti-proliferative activity of the derivatives. Compound b19 significantly inhibited the proliferation, migration, and invasion of MDA-MB-231 cells and promoted their apoptosis. The suppression of myosin light chain phosphorylation and the formation of stress fibres confirmed the inhibitory activity of b19 via the RhoA/ROCK pathway. b19 exhibited a different binding pattern from DC-Rhoin, as observed in molecular docking analysis. This study provides a reference for the development of anticancer agents targeting the RhoA/ROCK pathway.
Rho 家族 GTP 酶调控细胞过程,促进肿瘤生长和转移;因此,RhoA 是抑制肿瘤转移的潜在靶点。然而,RhoA 靶向抗癌药物的开发进展有限。在此,我们合成了苯并[b]噻吩-3-羧酸 1,1-二氧化物衍生物,该衍生物基于我们之前研究中报道的 RhoA 共价抑制剂(DC-Rhoin)。观察到的结构-活性关系(C-3 中的羧酰胺和 C-5 中的 1-甲基-1H-吡唑)增强了衍生物的抗增殖活性。化合物 b19 能明显抑制 MDA-MB-231 细胞的增殖、迁移和侵袭,并促进其凋亡。抑制肌球蛋白轻链磷酸化和应力纤维的形成证实了 b19 通过 RhoA/ROCK 途径发挥抑制活性。这项研究为开发针对 RhoA/ROCK 通路的抗癌药物提供了参考。
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引用次数: 0
Discovery of novel FGFR4 inhibitors through a build-up fragment strategy 通过积累片段策略发现新型表皮生长因子受体 4 抑制剂
IF 5.6 2区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-04-24 DOI: 10.1080/14756366.2024.2343350
Jihyung Kim, Chang Gyun Im, Kyujin Oh, Ji Min Lee, Fatimah Al-Rubaye, K. Min
Abstract Hepatocellular carcinoma (HCC) is a leading cause of cancer-related death. FGFR4 has been implicated in HCC progression, making it a promising therapeutic target. We introduce an approach for identifying novel FGFR4 inhibitors by sequentially adding fragments to a common warhead unit. This strategy resulted in the discovery of a potent inhibitor, 4c, with an IC50 of 33 nM and high selectivity among members of the FGFR family. Although further optimisation is required, our approach demonstrated the potential for discovering potent FGFR4 inhibitors for HCC treatment, and provides a useful method for obtaining hit compounds from small fragments.
摘要 肝细胞癌(HCC)是导致癌症相关死亡的主要原因。FGFR4 与 HCC 的进展有关,因此是一个很有前景的治疗靶点。我们介绍了一种通过在一个共同的弹头单元上依次添加片段来识别新型 FGFR4 抑制剂的方法。通过这一策略,我们发现了一种强效抑制剂 4c,其 IC50 值为 33 nM,在 FGFR 家族成员中具有高选择性。虽然还需要进一步优化,但我们的方法证明了发现治疗 HCC 的强效 FGFR4 抑制剂的潜力,并提供了从小片段中获得热门化合物的有用方法。
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引用次数: 0
Targeting bacterial growth in biofilm conditions: rational design of novel inhibitors to mitigate clinical and food contamination using QSAR 针对生物膜条件下的细菌生长:利用 QSAR 合理设计新型抑制剂,减轻临床和食品污染
IF 5.6 2区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-04-23 DOI: 10.1080/14756366.2024.2330907
Maria Galvez-Llompart, Jesús Hierrezuelo, Mariluz Blasco, Riccardo Zanni, Jorge Galvez, A. de Vicente, A. Pérez-García, D. Romero
Abstract Antimicrobial resistance (AMR) is a pressing global issue exacerbated by the abuse of antibiotics and the formation of bacterial biofilms, which cause up to 80% of human bacterial infections. This study presents a computational strategy to address AMR by developing three novel quantitative structure–activity relationship (QSAR) models based on molecular topology to identify potential anti-biofilm and antibacterial agents. The models aim to determine the chemo-topological pattern of Gram (+) antibacterial, Gram (−) antibacterial, and biofilm formation inhibition activity. The models were applied to the virtual screening of a commercial chemical database, resulting in the selection of 58 compounds. Subsequent in vitro assays showed that three of these compounds exhibited the most promising antibacterial activity, with potential applications in enhancing food and medical device safety.
摘要 抗菌药耐药性(AMR)是一个紧迫的全球性问题,抗生素的滥用和细菌生物膜的形成加剧了这一问题,导致高达 80% 的人类细菌感染。本研究提出了一种解决 AMR 问题的计算策略,即基于分子拓扑学开发三种新型定量结构-活性关系 (QSAR) 模型,以确定潜在的抗生物膜和抗菌剂。这些模型旨在确定革兰氏(+)抗菌、革兰氏(-)抗菌和抑制生物膜形成活性的化学拓扑模式。这些模型被应用于商业化学数据库的虚拟筛选,最终选出了 58 种化合物。随后的体外试验表明,其中三种化合物具有最有前途的抗菌活性,可用于提高食品和医疗器械的安全性。
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引用次数: 0
Evaluation of the anticancer effects exerted by 5-fluorouracil and heme oxygenase-1 inhibitor hybrids in HTC116 colorectal cancer cells 评估 5-氟尿嘧啶和血红素加氧酶-1 抑制剂混合物在 HTC116 大肠癌细胞中发挥的抗癌作用
IF 5.6 2区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-04-18 DOI: 10.1080/14756366.2024.2337191
Loredana Salerno, Antonietta Notaro, Valeria Consoli, Federica Affranchi, Valeria Pittalà, Valeria Sorrenti, Luca Vanella, Michela Giuliano, Sebastiano Intagliata
Colon cancer remains a clinical challenge in industrialised countries. Its treatment with 5-Flurouracil (5-FU) develops many side effects and resistance. Thus, several strategies have been undertak...
在工业化国家,结肠癌仍然是一项临床难题。使用 5-氟尿嘧啶(5-FU)治疗结肠癌会产生许多副作用和耐药性。因此,人们采取了多种策略...
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引用次数: 0
Synthesis, carbonic anhydrase inhibition studies and modelling investigations of phthalimide–hydantoin hybrids 邻苯二甲酰亚胺-海因杂化物的合成、碳酸酐酶抑制研究和模型研究
IF 5.6 2区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-04-12 DOI: 10.1080/14756366.2024.2335927
Morteza Abdoli, Alessandro Bonardi, Paola Gratteri, Claudiu T. Supuran, Raivis Žalubovskis
A novel series of hydantoins incorporating phthalimides has been synthesised by condensation of activated phthalimides with 1-aminohydantoin and investigated for their inhibitory activity against a...
通过将活化的邻苯二甲酰亚胺与 1- 氨基海因缩合,合成了一系列新颖的含邻苯二甲酰亚胺的海因,并研究了它们对...
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引用次数: 0
Design, synthesis, and evaluation of cyclic C7-bridged monocarbonyl curcumin analogs containing an o-methoxy phenyl group as potential agents against gastric cancer 设计、合成和评估含有邻甲氧基苯基的环状 C7-桥接单羰基姜黄素类似物,作为抗胃癌的潜在药物
IF 5.6 2区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-02-22 DOI: 10.1080/14756366.2024.2314233
Xin Gan, Yuna Wu, Min Zhu, Bo Liu, Miaomiao Kong, Zixuan Xi, Ke Li, Haibao Wang, Tiande Su, Jiali Yao, Fatehi Khushafah, Baozhu Yi, Jiabing Wang, Wulan Li, Jianzhang Wu
The structure-activity relationship (SAR) between toxicity and the types of linking ketones of C7 bridged monocarbonyl curcumin analogs (MCAs) was not clear yet. In the pursuit of effective and les...
C7桥接单羰基姜黄素类似物(MCAs)的毒性与连接酮类型之间的结构-活性关系(SAR)尚未明确。为了追求更有效、更低毒性的姜黄素类似物,我们对其进行了结构与活性关系(SAR)研究。
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引用次数: 0
期刊
Journal of Enzyme Inhibition and Medicinal Chemistry
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