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Establishing the Performance of Next-Generation Amplicon Sequencing for Detection of Giardia duodenalis in Ready-to-Eat Packaged Leafy Greens 确定新一代扩增子测序在检测即食包装绿叶菜中杜氏贾第鞭毛虫方面的性能。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-30 DOI: 10.1016/j.jfp.2024.100355
Holly Nichols , Monica Santin, Jenny G. Maloney

Giardia duodenalis is a globally distributed intestinal parasite that commonly infects both humans and animals. G. duodenalis is a species complex, which includes eight assemblages that vary both in genetic structure and host specificity. The prevalence of mixed-assemblage G. duodenalis cysts on food, an understudied infection route for G. duodenalis, remains unknown. In the present study, a method able to detect G. duodenalis mixed-assemblage infections using next-generation amplicon sequencing (NGS) of the beta-giardin gene was applied in combination with the US-FDA’s BAM Chapter 19b protocol for the detection of G. duodenalis from fresh produce to ascertain the limit of detection of G. duodenalis on leafy greens. Ready-to-eat baby Romaine lettuce was inoculated with 5 (n = 5), 20 (n = 10), 100 (n = 10), 200 (n = 10), or 1,000 (n = 10) G. duodenalis cysts of the assemblage B strain H3. Detection of G. duodenalis was successful in 100% of the samples seeded with 1,000, 200, and 100 cysts, in 50% of the samples seeded with 20 cysts, and in none of the samples seeded with 5 cysts. We thus demonstrate robust detection of G. duodenalis on packaged leafy greens using the BAM Chapter 19B method coupled with assemblage-sensitive NGS. This protocol provides a new diagnostic tool useful for both prevalence studies and outbreak investigations involving fresh produce that may assist in better describing the role of G. duodenalis in foodborne illness and in protecting consumers from contaminated fresh produce.

十二指肠贾第虫是一种分布于全球的肠道寄生虫,通常感染人类和动物。杜氏贾第鞭毛虫是一个物种复合体,包括基因结构和宿主特异性各不相同的八个集合体。食物中的混合型十二指肠球虫包囊是一种未被充分研究的十二指肠球虫感染途径,但其流行率仍然未知。在本研究中,使用 beta-giardin 基因的下一代扩增子测序 (NGS) 来检测 G. duodenalis 混合包囊感染的方法与美国食品药物管理局的 BAM 第 19b 章协议相结合,用于检测新鲜农产品中的 G. duodenalis,以确定叶菜中 G. duodenalis 的检测限。将 5 个(n=5)、20 个(n=10)、100 个(n=10)、200 个(n=10)或 1000 个(n=10)组合 B 菌株 H3 的 G. duodenalis 包囊接种到即食小罗马生菜中。在播种了 1000、200 和 100 个包囊的样本中,100% 的样本都成功检测到了 G. duodenalis;在播种了 20 个包囊的样本中,50% 的样本成功检测到了 G. duodenalis;在播种了 5 个包囊的样本中,没有一个样本成功检测到 G. duodenalis。因此,我们证明了使用 BAM 第 19B 章方法结合对菌落总数敏感的 NGS 可以在包装绿叶菜中稳健地检测到 G. duodenalis。该方案为涉及新鲜农产品的流行研究和疫情调查提供了一种新的诊断工具,有助于更好地描述十二指肠杆菌在食源性疾病中的作用,保护消费者免受新鲜农产品污染。
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引用次数: 0
Pear Wood Pyrolysis Influences Quality and Levels of Polycyclic Aromatic Hydrocarbons in Liquid Smoke 梨木热解影响液态烟雾中多环芳烃的质量和水平。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-28 DOI: 10.1016/j.jfp.2024.100320
Mingwu Qiao , Fei Wang , Shaohua Meng , Yufei Liu , Lianjun Song , Jiansheng Zhao , Yan Ma , Guanghui Zhao , Xianqing Huang , Dan Hai

Limu smoked chicken is a traditional Chinese delicacy; however, polycyclic aromatic hydrocarbons (PAHs) are generated during the smoking process. We developed a pyrolysis process for pear wood liquid smoke with minimal PAH generation. Pear wood liquid smoke products were prepared under different pyrolysis conditions in a self-made pyrolysis reactor, and the total phenol, carbonyl compound, total acid, and PAH contents and PAH toxicity risk were evaluated. With increasing temperatures, the toxicity equivalent ΣPAH of the smoke liquid reached 3.004 μg/kg. With increasing particle sizes, the total phenol content reached 1.6 mg/mL; the phenol content was 5.95 mg/mL. With increasing particle sizes, the toxicity equivalent ΣPAHs of the smoke liquor reached 2.441 μg/kg. The optimal parameters for treating pear wood smoke liquid in the thermal reaction device were a pyrolysis temperature of pear wood of >350 °C, particle size of S2, and sucrose content of 8%.

梨木熏鸡是中国的传统美食,但在熏制过程中会产生多环芳烃(PAHs)。我们开发了一种梨木液态烟的热解工艺,可将多环芳烃的生成量降至最低。在自制的热解反应器中,在不同的热解条件下制备了梨木液态烟雾产品,并评估了总酚、羰基化合物、总酸和多环芳烃的含量以及多环芳烃的毒性风险。随着温度的升高,烟液的毒性当量ΣPAH 达到了 3.004 μg/kg。随着颗粒尺寸的增大,总酚含量达到 1.6 mg/mL;酚含量为 5.95 mg/mL。随着颗粒尺寸的增大,烟液的毒性当量 ΣPAHs 达到 2.441 μg/kg。在热反应装置中处理梨木烟液的最佳参数是梨木热解温度大于 350℃、粒度为 S2、蔗糖含量为 8%。
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引用次数: 0
Impact of Operational Parameters on Pathogen Lethality in Dry and Semi-dry Uncooked Fermented Sausages 操作参数对干制和半干制未蒸煮发酵香肠中病原体致死率的影响
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-28 DOI: 10.1016/j.jfp.2024.100353
Jun Haeng Nam, Yawei Lin, Michael A. Schutz, Corrine J. Kamphuis, Hui Zeng, Teresa M. Bergholz

The safety of uncooked fermented, dried sausages relies upon controlled fermentation and drying that inactivates pathogenic bacteria. Current guidelines for the production of fermented sausages by the United States Department of Agriculture (USDA) Food Safety Inspection Services (FSIS) and related research highlight specific safety parameters. The confidence that processing steps, which do not include cooking, inherently mitigate microbial risks, is challenged by the resilience of pathogens in the dry and acidic environments of these food products. The aim of this work was to examine the length of drying required to achieve a target pathogen reduction across a range of sausage diameters. This study investigated the relationship between product diameter and time required to achieve target reductions of Escherichia coli O157:H7, Salmonella enterica, and Listeria monocytogenes, as well as the attainment of specific water activity (aw). The research utilized salami and summer sausage with diameters of 18 mm, 30 mm, 60 mm, 90 mm, and 110 mm. Sausage batter was inoculated with 5 strains each of E. coli O157:H7, L. monocytogenes, and S. enterica. Inoculated sausages were processed with fermentation and drying protocols for each sausage type. Smaller diameter sausages reached both the desired pathogen reduction and target aw of 0.85 sooner than larger ones. However, the time to achieve the target aw did not align with the time to achieve the pathogen reduction targets, suggesting that aw alone is not a reliable indicator of safety. Another finding was larger sausages achieved the target pathogen reduction without reaching the target aw, suggesting complex relationship between aw, diameter, and pathogen inactivation. These data support the need for food safety guidelines that consider drying duration, aw, and pathogen behavior for varying sausage diameters. This research contributes to developing more precise safety protocols for producing dry and semi-dry fermented sausages.

未煮熟的发酵干香肠的安全性取决于能灭活致病菌的受控发酵和干燥过程。美国农业部(USDA)食品安全检验局(FSIS)的现行发酵香肠生产准则和相关研究强调了特定的安全参数。人们相信加工步骤(不包括烹饪)从本质上减轻了微生物风险,但病原体在这些食品的干燥和酸性环境中的顽强生命力却给人们带来了挑战。这项工作的目的是研究在不同直径的香肠中达到减少病原体的目标所需的干燥时间。本研究调查了产品直径与实现大肠埃希氏菌 O157:H7、肠炎沙门氏菌和单核细胞增生李斯特氏菌减少量所需时间之间的关系,以及达到特定水活性(aw)的情况。研究使用了直径分别为 18 毫米、30 毫米、60 毫米、90 毫米和 110 毫米的萨拉米香肠和夏季香肠。香肠糊中分别接种了 5 株大肠杆菌 O157:H7、单核细胞增多性乳酸杆菌和肠球菌。接种后的香肠按照每种香肠的发酵和干燥规程进行加工。直径较小的香肠比直径较大的香肠更快达到预期的病原体减少量和 0.85 的目标 aw 值。然而,达到目标 aw 值的时间与达到病原体减少目标的时间并不一致,这表明仅靠 aw 值并不是安全的可靠指标。另一个发现是,较大的香肠达到了减少病原体的目标,但没有达到目标 aw,这表明 aw、直径和病原体灭活之间存在复杂的关系。这些数据支持了制定食品安全指南的必要性,该指南应考虑不同香肠直径的干燥时间、aw 和病原体行为。这项研究有助于为生产干发酵和半干发酵香肠制定更精确的安全规程。
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引用次数: 0
Characterization of Diarrheagenic Escherichia coli and Salmonella enterica from Produce in the Chobe District of Botswana 博茨瓦纳乔贝地区农产品中致泻性大肠杆菌和肠炎沙门氏菌的特征。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-24 DOI: 10.1016/j.jfp.2024.100351
Auja Bywater , Galaletsang Dintwe , Kathleen A. Alexander , Monica A. Ponder

Diarrheal disease is a leading cause of death in children in low- and moderate-income countries. Fresh produce, including fruits and vegetables, may harbor diarrheal disease-causing bacteria including strains of Salmonella enterica and Escherichia coli. This study aimed to determine the prevalence and antibiotic resistance profiles of S. enterica and E. coli isolated from produce samples (n = 207) obtained from retail markets in northern Botswana in Chobe District of Botswana in 2022. Samples were enriched in the appropriate selective media: Brilliant Green Bile Broth for E. coli and Rappaport Vassiliadis Broth for S. enterica. E. coli were confirmed by PCR detecting the phoA gene, and classified as potentially pathogenic through screening for the eae, stx, and stx2 and estIb genes. S. enterica isolates were confirmed using invA primers. Isolates were evaluated for resistance to ampicillin, amoxicillin-clavulanic acid, chloramphenicol, cefotaxime, doxycycline, streptomycin, sulfamethoxazole, and tetracycline antibiotic using the Kirby-Bauer Disk Diffusion method. E. coli was isolated from 15.5% of produce samples (n = 207). The gene eae was detected from 1.5% of samples, while stx1, stx2, and estIb were not detected. Resistance to one or more antibiotics was common (72%) with the majority of the resistant E. coli (n = 32) isolated from fruits (22%) and greens (18%) compared to other types of vegetables. Multidrug resistance (MDR, resistant to 3 or more antibiotics) was identified in 18% of samples. S. enterica was isolated from 3.4% of produce samples (7, n = 207). Resistance was uncommon among the S. enterica isolates (1/7). Overall prevalence of diarrheagenic S. enterica and E. coli was low; however, their presence and that of MDR E. coli in foods commonly consumed raw increases the risk to vulnerable populations. Strategies to reduce contamination of fresh produce and public education on washing and cooking some types of produce may be useful to reduce disease.

腹泻是中低收入国家儿童死亡的主要原因。包括水果和蔬菜在内的新鲜农产品可能滋生导致腹泻疾病的细菌,包括肠炎沙门氏菌和大肠埃希氏菌。本研究旨在确定 2022 年从博茨瓦纳北部乔贝区零售市场获得的农产品样本(n=207)中分离出的肠炎沙门氏菌和大肠杆菌的流行率和抗生素耐药性概况。样品在适当的选择性培养基中富集:用亮绿胆汁肉汤检测大肠杆菌,用拉帕波特-瓦西里阿迪斯肉汤检测肠杆菌。通过 PCR 检测 phoA 基因确认大肠杆菌,并通过筛查 eae、stx、stx2 和 estIb 基因将其归类为潜在致病菌。使用 invA 引物对肠道病毒分离物进行确认。采用柯比-鲍尔盘扩散法评估了分离物对氨苄西林、阿莫西林-克拉维酸、氯霉素、头孢噻肟、强力霉素、链霉素、磺胺甲恶唑和四环素抗生素的耐药性。15.5%的农产品样本(n=207)分离出了大肠杆菌。1.5%的样品中检测到 eae 基因,而 stx1、stx2 和 estIb 则未检测到。对一种或多种抗生素耐药的情况很普遍(72%),与其他类型的蔬菜相比,大多数耐药大肠杆菌(n=32)是从水果(22%)和蔬菜(18%)中分离出来的。在 18% 的样本中发现了多重耐药性(MDR,对 3 种或 3 种以上抗生素产生耐药性)。3.4%的农产品样本(7,n=207)中分离出了肠杆菌。肠炎球菌分离物中的耐药性并不常见(1/7)。致腹泻肠杆菌和大肠杆菌的总体流行率较低,但它们的存在以及常见生食食品中耐药大肠杆菌的存在增加了易感人群的风险。减少新鲜农产品污染的策略以及关于清洗和烹饪某些类型农产品的公众教育可能有助于减少疾病。
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引用次数: 0
Inactivation of Highly Pathogenic Avian Influenza Virus with High-temperature Short Time Continuous Flow Pasteurization and Virus Detection in Bulk Milk Tanks 用高温短时间连续流巴氏杀菌法灭活高致病性禽流感病毒以及在散装牛奶罐中检测病毒。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-21 DOI: 10.1016/j.jfp.2024.100349
Erica Spackman , Nathan Anderson , Stephen Walker , David L. Suarez , Deana R. Jones , Amber McCoig , Tristan Colonius , Timothy Roddy , Nicholas J. Chaplinski

Infections of dairy cattle with clade 2.3.4.4b H5N1 highly pathogenic avian influenza virus (HPAIV) were reported in March 2024 in the U.S. and viable virus was detected at high levels in raw milk from infected cows. This study aimed to determine the potential quantities of infectious HPAIV in raw milk in affected states where herds were confirmed positive by USDA for HPAIV (and therefore were not representative of the entire population), and to confirm that the commonly used continuous flow pasteurization using the FDA approved 72 °C (161°F) for 15 s conditions for high−temperature short time (HTST) processing, will inactivate the virus. Double-blinded raw milk samples from bulk storage tanks from farms (n = 275) were collected in four affected states. Samples were screened for influenza A using quantitative real-time RT-PCR (qrRT-PCR) of which 158 (57.5%) were positive and were subsequently quantified in embryonating chicken eggs. Thirty-nine qrRT-PCR positive samples (24.8%) were positive for infectious virus with a median titer of 3.5 log10 50% egg infectious doses (EID50) per mL. To closely simulate commercial milk pasteurization processing systems, a pilot-scale continuous flow pasteurizer was used to evaluate HPAIV inactivation in artificially contaminated raw milk using the most common legal conditions in the US: 72 °C (161°F) for 15 s. Among all replicates at two flow rates (n = 5 at 0.5 L/min; n = 4 at 1 L/min), no viable virus was detected. A mean reduction of ≥5.8 ± 0.2 log10 EID50/mL occurred during the heating phase where the milk is brought to 72.5 °C before the holding tube. Estimates from heat-transfer analysis support that standard U.S. continuous flow HTST pasteurization parameters will inactivate >12 log10 EID50/mL of HPAIV, which is ∼9 log10 EID50/mL greater than the median quantity of infectious virus detected in raw milk from bulk storage tank samples. These findings demonstrate that the US milk supply is safe when pasteurized.

2024 年 3 月,美国报告了奶牛感染 2.3.4.4b 支系 H5N1 高致病性禽流感病毒 (HPAIV)的情况,并在受感染奶牛的生奶中检测到高水平的存活病毒。本研究旨在确定受影响州生奶中传染性 HPAIV 的潜在数量,这些州的牛群已被美国农业部确认为 HPAIV 阳性(因此不能代表整个牛群),并确认常用的连续流巴氏杀菌法(使用 FDA 批准的 72°C (161°F) 15 秒高温短时间 (HTST) 处理条件)可灭活病毒。在四个受影响的州收集了来自农场散装储藏罐的双盲生乳样本(n=275)。使用定量实时 RT-PCR (qrRT-PCR)技术对样本进行甲型流感病毒筛查,其中 158 份样本(57.5%)呈阳性,随后在鸡胚蛋中进行定量检测。39 个 qrRT-PCR 阳性样本(24.8%)的传染性病毒呈阳性,平均滴度为每毫升 3.5 log10 50%鸡蛋感染剂量(EID50)。为了近似模拟商业牛奶巴氏杀菌处理系统,我们使用一台中试规模的连续流巴氏杀菌机,在美国最常见的法定条件下评估人工污染生奶中 HPAIV 的灭活情况:72°C (161°F) 15 秒。在两种流速下(0.5 升/分钟,n=5;1 升/分钟,n=4)的所有重复样品中,均未检测到存活病毒。在加热阶段,牛奶温度升至 72.5 摄氏度,然后进入保温管,平均每毫升 EID50 降低≥5.8 ± 0.2 log10。热传递分析的估计结果表明,标准的美国连续流 HTST 巴氏杀菌参数可灭活 >12 log10 EID50/mL 的高致病性禽流感病毒,这比从散装储奶罐样品中检测到的生乳中传染性病毒的平均数量高出 9 log10 EID50/mL。这些研究结果表明,美国的牛奶供应经巴氏杀菌后是安全的。
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引用次数: 0
Simultaneous Effects of Food-related Stresses on the Antibiotic Resistance of Foodborne Salmonella Serotypes 与食物有关的压力对食源性沙门氏菌血清型抗生素耐药性的同时影响。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-19 DOI: 10.1016/j.jfp.2024.100350
Ata Kaboudari, Javad Aliakbarlu, Tooraj Mehdizadeh

Antibiotic resistance has become one of the most critical issues in the field of public health in recent years. Exposure to food environment stresses may result in the development of antibiotic resistance in Salmonella. The present study aimed to investigate the simultaneous effects of food-related stresses (osmotic pressure, acid, heat, cold, and freezing stresses) on the antibiotic resistance changes in Salmonella Enteritidis and Salmonella Typhimurium. A factorial design with five factors at two levels was used to evaluate the main and interactive effects of stress factors on the antibiotic resistance of Salmonella serotypes. The changes in the antibiotic resistance of Salmonella serotypes were evaluated using the disc diffusion assay. The results showed that the different stresses had different effects on the antibiotic resistance of Salmonella serotypes. The freezing time and osmotic stresses had the most significant effects on the antibiotic resistance (P < 0.05). S. Enteritidis showed the slightest changes after exposure to stresses. The results also showed that a low level (24 h) of freezing time decreased the antibiotic resistance, but at a high level (96 h) increased it. The results emphasized that food processing and storage conditions should be considered as crucial factors in developing antibiotic resistance in Salmonella.

近年来,抗生素耐药性已成为公共卫生领域最关键的问题之一。暴露于食品环境的压力可能会导致沙门氏菌产生抗生素耐药性。本研究旨在探讨食品相关胁迫(渗透压、酸、热、冷和冰冻胁迫)对肠炎沙门氏菌和鼠伤寒沙门氏菌抗生素耐药性变化的影响。采用两级五个因子的析因设计来评估胁迫因子对沙门氏菌血清型抗生素耐药性的主要影响和交互影响。使用圆盘扩散试验评估了沙门氏菌血清型抗生素耐药性的变化。结果表明,不同的胁迫对沙门氏菌血清型的抗生素耐药性有不同的影响。冷冻时间和渗透胁迫对抗生素耐药性的影响最为显著(P<0.05)。
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引用次数: 0
Detection Limits of Insect Fragments in Spiked Whole Wheat Flour Using Multiplex Polymerase Chain Reaction (PCR) 使用多重聚合酶链式反应 (PCR) 检测添加了昆虫片段的全麦面粉中的昆虫片段。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-16 DOI: 10.1016/j.jfp.2024.100348
Monica Pava-Ripoll , Amy K. Miller , Hans K. Loechelt-Yoshioka , George C. Ziobro , Martine Ferguson

The need for a sensitive molecular method to detect specific species of insect contaminants in food products remains a significant challenge in the food industry. This study evaluated the detection limit of a multiplex end-point PCR assay for detecting insects in food. The assay amplifies two fragments of the cytochrome oxidase subunit I gene (COI-Fa and COI-Fb) and one fragment of the protein-coding wingless (wg) gene found in insects. Five insect species, comprising three vectors of foodborne pathogens (the housefly, Musca domestica, the American cockroach, Periplaneta americana, and the pharaoh ant, Monomorium pharaonis) and two storage insect pests (the red flour beetle, Tribolium castaneum and the Indian meal moth, Plodia interpunctella), were spiked separately and in combination at levels of 1, 0.1, 0.01, and 0.001% in whole wheat flour. At spike levels greater than 0.01%, amplicon bands of expected sizes were seen in 100% of samples containing fragments from distinct insect species. At least 25% of spiked samples at the lowest spike level had amplicon bands, except for samples spiked with M. domestica. Results showed an 18.9% probability (with 11.3% and 30% lower and upper confidence limits, respectively) of detecting insect fragments at the lowest spike level (0.001%, corresponding to 3–22 fragments), which is far below the FDA’s regulatory level of less than 75 fragments per 50 g of wheat flour. The intensity of amplicon bands in the gel images was higher at higher spike levels. However, this method is not quantitative enough to extrapolate the intensity of the amplicon bands to the number of insect fragments present in a sample. This multiplex assay was also evaluated in a variety of market food samples derived from plants and animals, showing its potential use in various food types. Overall, the sensitivity and specificity of this molecular approach suggest that it could be used in the future as a screening tool for detecting insect contaminants in food.

食品行业仍然面临着一个重大挑战,即需要一种灵敏的分子方法来检测食品中特定种类的昆虫污染物。本研究评估了用于检测食品中昆虫的多重终点 PCR 检测方法的检测限。该检测方法可扩增昆虫体内细胞色素氧化酶亚基 I 基因的两个片段(COI-Fa 和 COI-Fb)以及编码蛋白质的无翅虫(wg)基因的一个片段。在全麦面粉中分别或混合添加了五种昆虫,包括三种食源性病原体载体(家蝇、美洲大蠊和法老蚁)和两种贮藏害虫(红面粉甲虫和印度粉蛾),添加水平分别为 1%、0.1%、0.01% 和 0.001%。当加标水平大于 0.01%时,100% 的样品都能看到预期大小的扩增子条带,其中含有不同昆虫物种的片段。除添加了 M. domestica 的样品外,在最低穗状水平的添加样品中至少有 25% 出现了扩增子条带。结果显示,在最低加标水平(0.001%,相当于 3-22 个片段)上检测到昆虫片段的概率为 18.9%(置信下限和置信上限分别为 11.3%和 30%),远低于美国食品及药物管理局规定的每 50 克小麦粉中少于 75 个片段的水平。穗浓度越高,凝胶图像中的扩增子条带强度越高。不过,这种方法还不足以定量推断样品中昆虫片段的数量。该多重检测法还在各种市场上的动植物食品样本中进行了评估,显示了其在各类食品中的潜在用途。总之,这种分子方法的灵敏度和特异性表明,它将来可用作检测食品中昆虫污染物的筛选工具。
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引用次数: 0
Salmonella Biomapping of a Commercial Broiler Hatchery 商业肉鸡孵化场的沙门氏菌生物图谱。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-14 DOI: 10.1016/j.jfp.2024.100347
Michael J. Rothrock Jr. , Walid G. Al Hakeem , Adelumola Oladeinde , Torey Looft , Xiang Li , Jean Y. Guard

Poultry-associated salmonellosis results in significant costs to poultry producers and consumers. Given the vertically integrated nature of the United States poultry industry, a better understanding of Salmonella ecology throughout all levels of poultry production is essential. One nexus point is the hatchery, where eggs from multiple broiler breeder farms are incubated and hatched, with the chicks being sent to numerous farms; therefore, the hatchery represents an ideal area to understand preharvest Salmonella ecology and flow. To achieve this, a commercial broiler hatchery was biomapped, focusing on Salmonella prevalence and serotype diversity among four major sample type categories (Air, Egg, Water, Facility) across five different places in the prehatch, hatch, and posthatch areas. Following two sets of eggs from broiler breeder farms over two production days, the overall Salmonella prevalence was 26% (48/184). Of the positive samples, the highest prevalence was observed in swabs taken from the floor drains in the facility and transport truck (56%), as well as in the hatch and posthatch hatchery areas (50%). Kentucky (n = 17), Gaminara (n = 12), and Alachua (n = 11) were the dominant Salmonella serotypes, with serotypes of greatest outbreak concern from chickens (Enteritidis) representing only 6.25% (3/48) of all recovered Salmonella isolates. The posthatch transport area, including the underfloor reservoirs of the transport trucks, not only harbored Enteritidis but also the enrichment broths from these Salmonella-positive samples also possessed sequences matching the commercial live-attenuated vaccine Typhimurium strain according to CRISPR SeroSeq analyses. These findings highlight the complex diversity of commercial hatchery Salmonella populations, including identifying facility floor drains and transport trucks as potentially important critical control points for hatchery managers to focus their Salmonella mitigation efforts to reduce loads and serotypes entering live production farms.

家禽相关沙门氏菌病给家禽生产者和消费者造成了巨大损失。鉴于美国家禽业的垂直整合性质,更好地了解家禽生产各个环节中的沙门氏菌生态至关重要。孵化场是其中的一个关键点,来自多个肉种鸡养殖场的鸡蛋在孵化场孵化,雏鸡被送往多个养殖场;因此,孵化场是了解收获前沙门氏菌生态和流向的理想场所。为此,我们对一家商业肉鸡孵化场进行了生物测定,重点关注孵化前、孵化中和孵化后五个不同地点的四个主要样本类型(空气、鸡蛋、水、设施)中的沙门氏菌流行率和血清型多样性。在两个生产日内对肉种鸡养殖场的两组鸡蛋进行检测后,沙门氏菌的总体流行率为 26%(48/184)。在阳性样本中,从设施和运输卡车的地漏以及孵化前和孵化后孵化区(50%)采集的拭子中观察到的沙门氏菌感染率最高(56%)。肯塔基(n=17)、加米纳拉(n=12)和阿拉瓜(n=11)是主要的沙门氏菌血清型,而最令人担忧的鸡疫情爆发血清型(Enteritidis)仅占所有沙门氏菌分离物的 6.25%(3/48)。根据 CRISPR SeroSeq 分析,孵化后的运输区域(包括运输卡车的地板下蓄水池)不仅存在肠炎沙门氏菌,而且这些沙门氏菌阳性样本的富集肉汤也具有与商业减毒活疫苗 Typhimurium 株相匹配的序列。这些发现突显了商业孵化场沙门氏菌种群的复杂多样性,包括确定设施地漏和运输卡车可能是孵化场管理者的重要关键控制点,以集中精力减轻沙门氏菌感染,减少进入活体生产养殖场的沙门氏菌量和血清型。
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引用次数: 0
Effects of Organic Soil Amendments on Antimicrobial-Resistant Bacteria in Urban Agriculture Environments 有机土壤改良剂对城市农业环境中抗菌细菌的影响
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-13 DOI: 10.1016/j.jfp.2024.100344
Qingyue Zeng , Kevin Lam , Autumn Salcedo , Rohan V. Tikekar , Shirley A. Micallef , Ryan A. Blaustein

Biological soil amendments of animal origin (BSAAOs) are widely used in urban agriculture to improve soil quality. Although BSAAO use is regulated due to risks for introducing foodborne pathogens, effects on antimicrobial-resistant (AMR) bacteria are not well established. Here, we aimed to explore the impacts of BSAAOs on levels of resident AMR bacteria in leafy vegetable production environments (i.e., kale, lettuce, chard, cabbage) across urban farms and community gardens in the greater Washington D.C. area (n = 7 sites). Leaf tissue (LT), root zone soil (RZS; amended soil in crop beds), and bulk soil (BS; site perimeter) were collected and analyzed for concentrations of total heterotrophic bacteria (THB), ampicillin (Amp) or tetracycline (Tet) resistant THB, and coliforms. As expected, amended plots harbored significantly higher concentrations of THB than bulk soil (P < 0.001). The increases in total bacteria associated with reduced fractions of Tet-resistant bacteria (P = 0.008), as well as case-specific trends for reduced fractions of Amp-resistant bacteria and coliforms. Site-to-site variation in concentrations of AMR bacteria in soil and vegetable samples reflected differences in land history and crop management, while within-site variation was associated with specific amendment sources, as well as vegetable type and cultivar. Representative isolates of the AMR bacteria and coliforms were further screened for multidrug resistance (MDR) phenotypes, and a high frequency was observed for the former. In amended soils, as the soil pH (range 6.56–7.80) positively correlated with the fraction of Tet-resistant bacteria (rho = 0.529; P < 0.001), crop management strategies targeting pH may have applications to control related risks. Overall, our findings demonstrate that soil amendments promote soil bacteria concentrations and have important implications for limiting the spread of AMR bacteria, at least in the urban landscape.

动物源性生物土壤改良剂(BSAAOs)被广泛用于城市农业,以改善土壤质量。虽然动物源性生物土壤改良剂的使用因可能引入食源性病原体而受到监管,但其对抗菌剂耐药菌(AMR)的影响尚未得到充分证实。在此,我们旨在探讨 BSAAO 对大华盛顿地区城市农场和社区菜园叶菜生产环境(即羽衣甘蓝、生菜、芥蓝、卷心菜)中常驻 AMR 细菌水平的影响(n=7 个地点)。收集叶片组织 (LT)、根部土壤 (RZS;作物圃中的改良土壤) 和块状土壤 (BS;场地周边),并分析其异养菌总数 (THB)、耐氨苄西林 (Amp) 或耐四环素 (Tet) 的 THB 和大肠菌群的浓度。不出所料,改良地块的异养细菌浓度明显高于大块土壤(P
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引用次数: 0
Antibacterial Mechanism of Garviecin LG34 Against S. Aureus and L. Monocytogenes and its Application in Milk Preservation Garviecin LG34 对金黄色葡萄球菌和单核细胞增多性乳腺癌的抗菌机制及其在牛奶保存中的应用。
IF 2.1 4区 农林科学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-13 DOI: 10.1016/j.jfp.2024.100345
Yurong Gao, Dapeng Li

The objective of this study was to reveal the antibacterial mode of action of garviecin LG34 against S. aureus CICC 21600 and L. monocytogenes CICC 21633 and measure the inhibitions on these two foodborne pathogenic bacteria in milk. Antibacterial mechanism of garviecin LG34 was ascertained by its effect on the efflux of Potassium (K+) ions, extracellular electrical conductivity, UV-absorbing substances, potential across the membrane (ΔΨ), and cell permeability. The inhibition of garviecin LG34 against S. aureus CICC 21600 and L. monocytogenes CICC 21600 in milk was studied by viable counting method. Supplementation with 160 AU/ml of garviecin LG34 had a bactericidal effect on S. aureus CICC 21600 and L. monocytogenes CICC 21633. A total of 80, 160, and 320 AU/ml of garviecin LG34 resulted in the effusion of potassium ion and UV-absorbing substances, the leakage of cellular electrolytes, and the dissipation of electrical potential across the membrane of these two food-borne bacteria and showed a dose-dependent. Moreover, the increase in cell permeability of both strains was observed by flow cytometer after cells treated with 160 AU/ml of garviecin LG34. Garviecin LG34 significantly inhibited the growth of these two food-borne bacteria in milk, especially in skimmed milk. Garviecin LG34 could cause pore formation, intracellular materials release, and permeability increase of S. aureus CICC 21600 and L. monocytogenes CICC 21633, and could be applied to milk as bio-preservative.

本研究旨在揭示加维素 LG34 对金黄色葡萄球菌(S. aureus CICC 21600)和单核细胞增多性酵母菌(L. monocytogenes CICC 21633)的抗菌作用模式,并测定其对牛奶中这两种食源性致病菌的抑制作用。通过对钾(K+)离子外流、细胞外电导率、紫外线吸收物质、跨膜电位(ΔΨ)和细胞通透性的影响,确定了大黄素 LG34 的抗菌机制。通过活力计数法研究了加维素 LG34 对牛奶中金黄色葡萄球菌 CICC 21600 和单核细胞增生性酵母菌 CICC 21600 的抑制作用。添加 160 AU/ml 的加维素 LG34 对金黄色葡萄球菌 CICC 21600 和单核细胞增多性酵母菌 CICC 21633 有杀菌作用。80、160 和 320 AU/ml 的加维素 LG34 会导致这两种食源性细菌的钾离子和紫外线吸收物质流出、细胞电解质渗漏和膜上电位耗散,并表现出剂量依赖性。此外,用 160 AU/ml 的加维素 LG34 处理细胞后,用流式细胞仪观察到这两种菌株的细胞通透性增加。Garviecin LG34能明显抑制这两种食源性细菌在牛奶中的生长,尤其是在脱脂牛奶中。Garviecin LG34 能使金黄色葡萄球菌 CICC 21600 和单核细胞增多性乳酸杆菌 CICC 21633 形成孔隙、释放胞内物质并增加其渗透性,可作为生物防腐剂应用于牛奶中。
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引用次数: 0
期刊
Journal of food protection
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