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Morphomics via next-generation electron microscopy. 通过新一代电子显微镜进行形态组学研究。
IF 5.5 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-10 DOI: 10.1093/jmcb/mjad081
Raku Son, Kenji Yamazawa, Akiko Oguchi, Mitsuo Suga, Masaru Tamura, Motoko Yanagita, Yasuhiro Murakawa, Satoshi Kume

The living body is composed of innumerable fine and complex structures. Although these structures have been studied in the past, a vast amount of information pertaining to them still remains unknown. When attempting to observe these ultra-structures, the use of electron microscopy (EM) has become indispensable. However, conventional EM settings are limited to a narrow tissue area, which can bias observations. Recently, new trends in EM research have emerged, enabling coverage of far broader, nano-scale fields of view for two-dimensional wide areas and three-dimensional large volumes. Moreover, cutting-edge bioimage informatics conducted via deep learning has accelerated the quantification of complex morphological bioimages. Taken together, these technological and analytical advances have led to the comprehensive acquisition and quantification of cellular morphology, which now arises as a new omics science termed 'morphomics'.

生命体由无数精细而复杂的结构组成。尽管过去人们已经对这些结构进行过研究,但与之相关的大量信息仍然不为人知。在试图观察这些超结构时,电子显微镜(EM)的使用已变得不可或缺。然而,传统的电子显微镜设置仅限于狭窄的组织区域,这可能会使观察结果出现偏差。最近,电子显微镜研究出现了新的趋势,可以覆盖更广阔的纳米级视野,包括二维大面积和三维大体积。此外,通过深度学习进行的尖端生物图像信息学加速了复杂形态生物图像的量化。总之,这些技术和分析方面的进步促成了对细胞形态的全面采集和量化,现在已成为一门新的全息科学,被称为 "形态组学"。
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引用次数: 0
IDeAS: an interactive database for dysregulated alternative splicing in cancers across Chinese and western patients. 想法:一个关于中国和西方患者癌症中失调的选择性剪接的交互式数据库。
IF 5.5 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-10 DOI: 10.1093/jmcb/mjad074
Hanwen Zhou, Liyun Yuan, Yuanhu Ju, Yue Hu, Siqi Wang, Ruifang Cao, Zefeng Wang, Guoqing Zhang
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引用次数: 0
Inhibition of GLUD1 mediated by LASP1 and SYVN1 contributes to hepatitis B virus X protein-induced hepatocarcinogenesis LASP1 和 SYVN1 介导的 GLUD1 抑制作用有助于乙型肝炎病毒 X 蛋白诱导的肝癌发生
IF 5.5 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-08 DOI: 10.1093/jmcb/mjae014
Hong-Juan You, Qi Li, Li-Hong Ma, Xing Wang, Huan-Yang Zhang, Yu-Xin Wang, En-Si Bao, Yu-Jie Zhong, De-Long Kong, Xiang-Ye Liu, Fan-Yun Kong, Kui-Yang Zheng, Ren-Xian Tang
Glutamate dehydrogenase 1 (GLUD1) is implicated in oncogenesis. However, little is known about the relationship between GLUD1 and hepatocellular carcinoma (HCC). In the present study, we demonstrated that the expression levels of GLUD1 significantly decreased in tumors, which was relevant to the poor prognosis of HCC. Functionally, GLUD1 silencing enhanced the growth and migration of HCC cells. Mechanistically, the upregulation of interleukin-32 through AKT activation contributes to GLUD1 silencing-facilitated hepatocarcinogenesis. The interaction between GLUD1 and AKT, as well as α-ketoglutarate regulated by GLUD1, can suppress AKT activation. In addition, LIM and SH3 protein 1 (LASP1) interacts with GLUD1 and induces GLUD1 degradation via the ubiquitin–proteasome pathway, which relies on the E3 ubiquitin ligase synoviolin (SYVN1), whose interaction with GLUD1 is enhanced by LASP1. In hepatitis B virus (HBV)-related HCC, the HBV X protein (HBX) can suppress GLUD1 with the participation of LASP1 and SYVN1. Collectively, our data suggest that GLUD1 silencing is significantly associated with HCC development, and LASP1 and SYVN1 mediate the inhibition of GLUD1 in HCC, especially in HBV-related tumors.
谷氨酸脱氢酶 1 (GLUD1) 与肿瘤发生有关。然而,人们对 GLUD1 与肝细胞癌(HCC)之间的关系知之甚少。在本研究中,我们发现 GLUD1 在肿瘤中的表达水平显著下降,这与 HCC 的不良预后有关。在功能上,沉默 GLUD1 能增强 HCC 细胞的生长和迁移。从机理上讲,白细胞介素-32通过AKT激活上调导致了GLUD1沉默促进肝癌的发生。GLUD1与AKT之间的相互作用以及GLUD1调控的α-酮戊二酸可抑制AKT的活化。此外,LIM 和 SH3 蛋白 1(LASP1)与 GLUD1 相互作用,并通过泛素-蛋白酶体途径诱导 GLUD1 降解,而泛素-蛋白酶体途径依赖于 E3 泛素连接酶 synoviolin(SYVN1),LASP1 可增强 SYVN1 与 GLUD1 的相互作用。在乙型肝炎病毒(HBV)相关的 HCC 中,HBV X 蛋白(HBX)可在 LASP1 和 SYVN1 的参与下抑制 GLUD1。总之,我们的数据表明,GLUD1 的沉默与 HCC 的发展密切相关,LASP1 和 SYVN1 在 HCC 中介导了对 GLUD1 的抑制,尤其是在 HBV 相关肿瘤中。
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引用次数: 0
ELP3 stabilizes c-Myc to promote tumorigenesis. ELP3稳定c-myc以促进肿瘤发生。
IF 5.5 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-04 DOI: 10.1093/jmcb/mjad059
Wentao Zhao, Cong Ouyang, Chen Huang, Jiaojiao Zhang, Qiao Xiao, Fengqiong Zhang, Huihui Wang, Furong Lin, Jinyang Wang, Zhanxiang Wang, Bin Jiang, Qinxi Li

ELP3, the catalytic subunit of the Elongator complex, is an acetyltransferase and associated with tumor progression. However, the detail of ELP3 oncogenic function remains largely unclear. Here, we found that ELP3 stabilizes c-Myc to promote tumorigenesis in an acetyltransferase-independent manner. Mechanistically, ELP3 competes with the E3-ligase FBXW7β for c-Myc binding, resulting in the inhibition of FBXW7β-mediated ubiquitination and proteasomal degradation of c-Myc. ELP3 knockdown diminishes glycolysis and glutaminolysis and dramatically retards cell proliferation and xenograft growth by downregulating c-Myc, and such effects are rescued by the reconstitution of c-Myc expression. Moreover, ELP3 and c-Myc were found overexpressed with a positive correlation in colorectal cancer and hepatocellular carcinoma. Taken together, we elucidate a new function of ELP3 in promoting tumorigenesis by stabilizing c-Myc, suggesting that inhibition of ELP3 is a potential strategy for treating c-Myc-driven carcinomas.

ELP3是Elongator复合物的催化亚基,是一种乙酰转移酶,与肿瘤进展有关。然而,ELP3致癌功能的细节在很大程度上仍不清楚。在这里,我们发现ELP3稳定c-Myc,以非依赖于乙酰转移酶的方式促进肿瘤发生。在机械上,ELP3与E3连接酶FBXW7β竞争c-Myc结合,导致FBXW8β介导的c-Myc的泛素化和蛋白酶体降解受到抑制。ELP3敲低减少了糖酵解和谷氨酰胺解,并通过下调c-Myc显著延缓细胞增殖和异种移植物生长,并且通过重建c-Myc表达来挽救这种影响。此外,ELP3和c-Myc在结直肠癌癌症和肝细胞癌中过表达,且呈正相关。总之,我们阐明了ELP3通过稳定c-Myc促进肿瘤发生的新功能,表明抑制ELP3是治疗c-Myc驱动的癌症的潜在策略。
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引用次数: 0
Targeting hepatic ceruloplasmin mitigates nonalcoholic steatohepatitis by modulating bile acid metabolism. 靶向肝铜蓝蛋白通过调节胆汁酸代谢减轻非酒精性脂肪性肝炎。
IF 5.5 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-04 DOI: 10.1093/jmcb/mjad060
Quanxin Jiang, Ning Wang, Sijia Lu, Jie Xiong, Yanmei Yuan, Junli Liu, Suzhen Chen

Nonalcoholic steatohepatitis (NASH) is a condition that progresses from nonalcoholic fatty liver disease (NAFLD) and is characterized by hepatic fat accumulation, inflammation, and fibrosis. It has the potential to develop into cirrhosis and liver cancer, and currently no effective pharmacological treatment is available. In this study, we investigate the therapeutic potential of targeting ceruloplasmin (Cp), a copper-containing protein predominantly secreted by hepatocytes, for treating NASH. Our result show that hepatic Cp is remarkedly upregulated in individuals with NASH and the mouse NASH model. Hepatocyte-specific Cp ablation effectively attenuates the onset of dietary-induced NASH by decreasing lipid accumulation, curbing inflammation, mitigating fibrosis, and ameliorating liver damage. By employing transcriptomics and metabolomics approaches, we have discovered that hepatic deletion of Cp brings about remarkable restoration of bile acid (BA) metabolism during NASH. Hepatic deletion of Cp effectively remodels BA metabolism by upregulating Cyp7a1 and Cyp8b1, which subsequently leads to enhanced BA synthesis and notable alterations in BA profiles. In conclusion, our studies elucidate the crucial involvement of Cp in NASH, highlighting its significance as a promising therapeutic target for the treatment of this disease.

非酒精性脂肪性肝炎(NASH)是一种由非酒精性脂性肝病(NAFLD)发展而来的疾病,其特征是肝脏脂肪积聚、炎症和纤维化。它有可能导致肝硬化和癌症,目前尚无有效的药物治疗方法。在这项研究中,我们研究了靶向铜蓝蛋白(Cp)治疗NASH的潜力,铜蓝蛋白是一种主要由肝细胞分泌的含铜蛋白。我们的结果表明,在患有NASH的个体和小鼠NASH模型中,肝脏Cp显著上调。肝细胞特异性Cp消融通过减少脂质积聚、抑制炎症、减轻纤维化和改善肝损伤,有效减轻饮食诱导的NASH的发作。通过采用转录组学和代谢组学方法,我们发现肝脏Cp缺失通过深刻影响胆汁酸代谢来显著恢复NASH。肝脏Cp缺失通过上调Cyp7a1和Cyp8b1有效重塑胆汁酸代谢,随后导致胆汁酸合成增强和胆汁酸谱的显著改变。总之,我们的研究阐明了Cp在NASH中的重要作用,强调了其作为治疗该疾病的一个有前景的治疗靶点的重要性。
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引用次数: 0
Sgo1 interacts with CENP-A to guide accurate chromosome segregation in mitosis. Sgo1与CENP-A相互作用,指导有丝分裂中准确的染色体分离。
IF 5.3 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-04 DOI: 10.1093/jmcb/mjad061
Fengge Wu, Hameed Akbar, Chunyue Wang, Xiao Yuan, Zhen Dou, McKay Mullen, Liwen Niu, Liang Zhang, Jianye Zang, Zhikai Wang, Xuebiao Yao, Xiaoyu Song, Xing Liu

Shugoshin-1 (Sgo1) is necessary for maintaining sister centromere cohesion and ensuring accurate chromosome segregation during mitosis. It has been reported that the localization of Sgo1 at the centromere is dependent on Bub1-mediated phosphorylation of histone H2A at T120. However, it remains uncertain whether other centromeric proteins play a role in regulating the localization and function of Sgo1 during mitosis. Here, we show that CENP-A interacts with Sgo1 and determines the localization of Sgo1 to the centromere during mitosis. Further biochemical characterization revealed that lysine and arginine residues in the C-terminal domain of Sgo1 are critical for binding CENP-A. Interestingly, the replacement of these basic amino acids with acidic amino acids perturbed the localization of Sgo1 and Aurora B to the centromere, resulting in aberrant chromosome segregation and premature chromatid separation. Taken together, these findings reveal a previously unrecognized but direct link between Sgo1 and CENP-A in centromere plasticity control and illustrate how the Sgo1-CENP-A interaction guides accurate cell division.

Shugoshin-1(Sgo1)是维持姐妹着丝粒凝聚力和确保有丝分裂过程中准确的染色体分离所必需的。据报道,Sgo1在着丝粒的定位依赖于Bub1介导的组蛋白H2A在T120的磷酸化。然而,其他着丝粒蛋白是否在有丝分裂过程中调节Sgo1的定位和功能仍不确定。在这里,我们发现CENP-A与Sgo1相互作用,并决定了在有丝分裂过程中Sgo1在着丝粒上的定位。进一步的生化表征显示,Sgo1的C末端结构域中的赖氨酸和精氨酸残基对于结合CENP-A是关键的。有趣的是,用酸性氨基酸取代这些碱性氨基酸干扰了Sgo1和Aurora B在着丝粒上的定位,导致染色体异常分离和染色单体过早分离。总之,这些发现揭示了在着丝粒可塑性控制中Sgo1和CENP-a之间以前未被识别但直接的联系,并说明了Sgo1-CENP-a相互作用如何引导准确的细胞分裂。
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引用次数: 0
Indomethacin restrains cytoplasmic nucleic acid-stimulated immune responses by inhibiting the nuclear translocation of IRF3 吲哚美辛通过抑制 IRF3 的核转位抑制细胞质核酸刺激的免疫反应
IF 5.5 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-04 DOI: 10.1093/jmcb/mjae015
Miao Wang, Xiao-Wei Li, Sen-Chao Yuan, Jie Pan, Zeng-Lin Guo, Li-Ming Sun, Shao-Zhen Jiang, Ming Zhao, Wen Xue, Hong Cai, Lin Gu, Dan Luo, Ling Chen, Xue-Qing Zhou, Qiu-Ying Han, Jin Li, Tao Zhou, Tian Xia, Tao Li
The recognition of cytosolic nucleic acid triggers the DNA/RNA sensor–IRF3 axis-mediated production of type I interferons (IFNs), which are essential for antiviral immune responses. However, the inappropriate activation of these signaling pathways is implicated in autoimmune conditions. Here, we report that indomethacin, a widely used nonsteroidal anti-inflammatory drug, inhibits nucleic acid-triggered IFN production. We found that both DNA- and RNA-stimulated IFN expression can be effectively blocked by indomethacin. Interestingly, indomethacin also prohibits the nuclear translocation of IRF3 following cytosolic nucleic acid recognition. Importantly, in cell lines and a mouse model of Aicardi–Goutières syndrome, indomethacin administration blunts self-DNA-induced autoimmune responses. Thus, our study reveals a previously unknown function of indomethacin and provides a potential treatment for cytosolic nucleic acid-stimulated autoimmunity.
细胞膜核酸的识别会触发 DNA/RNA 传感器-IRF3 轴介导的 I 型干扰素(IFNs)的产生,IFNs 是抗病毒免疫反应所必需的。然而,这些信号通路的不适当激活与自身免疫疾病有关。在这里,我们报告了一种广泛使用的非甾体抗炎药物--吲哚美辛能抑制核酸触发的 IFN 生成。我们发现,吲哚美辛能有效阻断 DNA 和 RNA 刺激的 IFN 表达。有趣的是,吲哚美辛还能抑制IRF3在细胞核酸识别后的核转位。重要的是,在细胞系和艾卡迪-古蒂耶尔综合征小鼠模型中,吲哚美辛能减弱自身 DNA 诱导的自身免疫反应。因此,我们的研究揭示了吲哚美辛以前未知的功能,并为细胞核酸刺激的自身免疫提供了一种潜在的治疗方法。
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引用次数: 0
SV2B defines a subpopulation of synaptic vesicles. SV2B 定义了突触小泡的一个亚群。
IF 5.3 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-04 DOI: 10.1093/jmcb/mjad054
Isabelle Paulussen, Hannes Beckert, Timothy F Musial, Lena J Gschossmann, Julia Wolf, Mathieu Schmitt, Jérôme Clasadonte, Georges Mairet-Coello, Christian Wolff, Susanne Schoch, Dirk Dietrich

Synaptic vesicles can undergo several modes of exocytosis, endocytosis, and trafficking within individual synapses, and their fates may be linked to different vesicular protein compositions. Here, we mapped the intrasynaptic distribution of the synaptic vesicle proteins SV2B and SV2A in glutamatergic synapses of the hippocampus using three-dimensional electron microscopy. SV2B was almost completely absent from docked vesicles and a distinct cluster of vesicles found near the active zone. In contrast, SV2A was found in all domains of the synapse and was slightly enriched near the active zone. SV2B and SV2A were found on the membrane in the peri-active zone, suggesting the recycling from both clusters of vesicles. SV2B knockout mice displayed an increased seizure induction threshold only in a model employing high-frequency stimulation. Our data show that glutamatergic synapses generate molecularly distinct populations of synaptic vesicles and are able to maintain them at steep spatial gradients. The almost complete absence of SV2B from vesicles at the active zone of wildtype mice may explain why SV2A has been found more important for vesicle release.

突触小泡在单个突触内可经历多种外渗、内吞和转运模式,它们的命运可能与不同的囊泡蛋白组成有关。在这里,我们利用三维电子显微镜绘制了突触小泡蛋白 SV2B 和 SV2A 在海马谷氨酸能突触内的分布图。对接的囊泡中几乎完全没有 SV2B,在活动区附近发现了一个明显的囊泡群。相比之下,SV2A存在于突触的所有区域,并在活动区附近略有富集。SV2B和SV2A都出现在活动区周围的膜上,这表明这两簇囊泡都在循环利用。SV2B 基因敲除小鼠仅在高频刺激模型中表现出癫痫诱发阈值升高。我们的数据表明,谷氨酸能突触会产生分子上不同的突触小泡群,并能将它们维持在陡峭的空间梯度上。野生型小鼠活动区的囊泡中几乎完全没有 SV2B,这也许可以解释为什么 SV2A 被认为对囊泡释放更为重要。
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引用次数: 0
Mitochondrial aldehyde dehydrogenase rescues against diabetic cardiomyopathy through GSK3β-mediated preservation of mitochondrial integrity and Parkin-mediated mitophagy. 线粒体醛脱氢酶通过GSK3β介导的线粒体完整性保护和帕金介导的自噬拯救糖尿病心肌病。
IF 5.3 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-04 DOI: 10.1093/jmcb/mjad056
Yingmei Zhang, Rongjun Zou, Miyesaier Abudureyimu, Qiong Liu, Jipeng Ma, Haixia Xu, Wei Yu, Jian Yang, Jianguo Jia, Sanli Qian, Haichang Wang, Yang Yang, Xin Wang, Xiaoping Fan, Jun Ren

Mitochondrial aldehyde dehydrogenase (ALDH2) offers proven cardiovascular benefit, although its impact on diabetes remains elusive. This study examined the effects of ALDH2 overexpression and knockout on diabetic cardiomyopathy and the mechanism involved with a focus on mitochondrial integrity. Mice challenged with streptozotocin (STZ, 200 mg/kg, via intraperitoneal injection) exhibited pathological alterations, including reduced respiratory exchange ratio, dampened fractional shortening and ejection fraction, increased left ventricular end-systolic and diastolic diameters, cardiac remodeling, cardiomyocyte contractile anomalies, intracellular Ca2+ defects, myocardial ultrastructural injury, oxidative stress, apoptosis, and mitochondrial damage, which were overtly attenuated or accentuated by ALDH2 overexpression or knockout, respectively. Diabetic patients also exhibited reduced plasma ALDH2 activity, cardiac remodeling, and diastolic dysfunction. In addition, STZ challenge altered expression levels of mitochondrial proteins (PGC-1α and UCP2) and Ca2+ regulatory proteins (SERCA, Na+-Ca2+ exchanger, and phospholamban), dampened autophagy and mitophagy (LC3B ratio, TOM20, Parkin, FUNDC1, and BNIP3), disrupted phosphorylation of Akt, GSK3β, and Foxo3a, and elevated PTEN phosphorylation, most of which were reversed or worsened by ALDH2 overexpression or knockout, respectively. Furthermore, the novel ALDH2 activator torezolid, as well as the classical ALDH2 activator Alda-1, protected against STZ- or high glucose-induced in vivo or in vitro cardiac anomalies, which was nullified by inhibition of Akt, GSK3β, Parkin, or mitochondrial coupling. Our data discerned a vital role for ALDH2 in diabetic cardiomyopathy possibly through regulation of Akt and GSK3β activation, Parkin mitophagy, and mitochondrial function.

线粒体乙醛脱氢酶(ALDH2)已被证明对心血管有益,尽管它对糖尿病的影响仍然难以捉摸。本研究检测了ALDH2过表达(OE)和敲除(KO)对糖尿病心肌病的影响,以及与线粒体完整性有关的机制。用链脲佐菌素(STZ,200mg/kg.i.p.)攻击ALDH2-OE和KO小鼠以建立糖尿病。糖尿病患者表现出血浆ALDH2活性降低、心脏重塑和舒张功能障碍。STZ激发引起呼吸交换率(RER)降低,缩短分数、射血分数降低,左心室收缩末期和舒张末期直径增加,心脏重塑,心肌细胞收缩和细胞内Ca2+缺陷(缩短峰值和缩短/再增强最大速度降低,再增强延长,细胞内Ca2+升高和清除降低),心肌超微结构损伤、氧化应激、细胞凋亡和线粒体损伤,ALDH2OE和KO分别明显减弱和加重了其影响。免疫印迹显示线粒体蛋白PPARγ共激活因子1α(PGC-1α)和UCP-2下调,Ca2+调节蛋白包括SERCA和Na+-Ca2+交换蛋白,升高磷蛋白,抑制自噬和线粒体自噬(LC3B比率,TOM20,Parkin,FUNDC1和BNIP3),破坏Akt、GSK3β和Foxo3a的磷酸化,并升高PTEN磷酸化,ALDH2OE和KO分别逆转和恶化了其效果(FUNDC1和BNIP3除外)。体内和体外数据显示,新型ALDH2激活剂托雷唑胺/Alda-1对STZ或高糖诱导的心脏异常具有保护作用,其作用被Akt、GSK3β、Parkin和线粒体偶联的抑制所抵消。我们的数据表明,ALDH2在糖尿病心肌病中的重要作用可能是通过调节Akt、GSK3β活化、parkin线粒体自噬和线粒体功能。
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引用次数: 0
Forty years of HIV research inspires the development of SARS-CoV-2 therapy. 四十年的HIV研究激发了严重急性呼吸系统综合征冠状病毒2型治疗的发展。
IF 5.5 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-04-04 DOI: 10.1093/jmcb/mjad065
Roberto Patarca, William A Haseltine
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引用次数: 0
期刊
Journal of Molecular Cell Biology
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