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Molecular detection and identification of Enteromonas species in human and animal hosts using polymerase chain reaction and DNA sequencing 利用聚合酶链式反应和 DNA 测序对人类和动物宿主体内的肠单胞菌进行分子检测和鉴定
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-23 DOI: 10.1016/j.mex.2024.102875

Enteromonas hominis, a human intestinal protozoan parasite of the diplomonad group, has been overlooked because of its commensal features; therefore, molecular studies on this parasite are limited. To address this gap, we designed a molecular screening protocol using polymerase chain reaction (PCR) and DNA sequencing targeting the 18S small subunit ribosomal RNA gene and applied this screening method to the molecular epidemiological analysis of Enteromonas spp. in humans and various livestock. We validated our methodology using stool samples collected from 215 humans and 270 animal hosts (buffaloes, pigs, dogs, goats, horses, rodents, chickens, and ducks) during an annual epidemiological investigation conducted from 2013 to 2016 on Sumba Island, Indonesia. The overall prevalences of Enteromonas spp. were 33.9 % (n = 73/215) in humans and 25.2 % (n = 68/270) in mammals and avians. The positive predictive value of this PCR method for Enteromonas spp., as evaluated through sequencing, was 90.1 % in human samples and 58.1 % in non-human samples (particularly low, 11.4 % in rodents). Although the specificity of the PCR approach may not be perfect, in combination with DNA sequencing, it was effective in detecting and identifying a partial sequence (1458 bp) of the target gene region in Enteromonas species.

人肠单胞菌(Enteromonas hominis)是一种人类肠道原生动物寄生虫,属于双核类,因其共生特征而被忽视;因此,对这种寄生虫的分子研究非常有限。为了填补这一空白,我们设计了一种分子筛选方案,使用聚合酶链式反应(PCR)和针对 18S 小亚基核糖体 RNA 基因的 DNA 测序,并将这种筛选方法应用于人类和各种家畜中肠单胞菌属的分子流行病学分析。在印度尼西亚松巴岛 2013 年至 2016 年的年度流行病学调查中,我们使用从 215 名人类和 270 种动物宿主(水牛、猪、狗、山羊、马、啮齿动物、鸡和鸭)采集的粪便样本验证了我们的方法。肠单胞菌属在人类中的总体流行率为 33.9%(n = 73/215),在哺乳动物和鸟类中的总体流行率为 25.2%(n = 68/270)。通过测序评估,该 PCR 方法对肠单胞菌属的阳性预测值在人类样本中为 90.1%,在非人类样本中为 58.1%(啮齿类动物中的预测值尤其低,为 11.4%)。尽管 PCR 方法的特异性可能并不完美,但结合 DNA 测序,它能有效检测和鉴定肠单胞菌目标基因区的部分序列(1458 bp)。
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引用次数: 0
Effects of computer-based cognitive training vs. paper-and-pencil-based training on the cognitive development of typically developing children: Protocol for a randomized controlled trial 基于计算机的认知训练与基于纸笔的训练对发育正常儿童认知发展的影响:随机对照试验方案
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-23 DOI: 10.1016/j.mex.2024.102877

The research aims to evaluate the effectiveness of a computerized cognitive training program in improving executive functions and attention in elementary school children, compared to a traditional paper-and-pencil intervention. The study has been formulated as a randomized controlled trial with pre- and post-intervention measures. For the study, third-grade children with typical development aged between 7 and 9 years will be recruited. Participants will be randomly assigned to the two study arms (control and experimental). The experimental group will participate in a computerized intervention using the NeuronUp cognitive stimulation platform for 8 weeks, twice a week. Sessions will be conducted using computers in the computer lab of the participating educational institution. The active control group will engage in paper-and-pencil cognitive training for the same duration and intensity as the experimental group. Evaluators will be blinded to the assignment, and participants will be blinded to the target intervention. Hypothesis testing will be conducted through ANOVA-MR, and logistic regressions will be implemented to assess the effect of socioeconomic variables on children's performance. These results are expected to contribute to the discussion on the opportunities and benefits offered by cognitive training programs on the cognitive development of typically developing children.

研究旨在评估计算机化认知训练计划与传统的纸笔干预相比,在改善小学生执行功能和注意力方面的效果。研究采用随机对照试验的形式,对干预前后进行测量。研究将招募 7 至 9 岁具有典型发育特征的三年级儿童。参与者将被随机分配到两个研究组(对照组和实验组)。实验组将参加使用 NeuronUp 认知刺激平台的计算机化干预,为期 8 周,每周两次。课程将在参与研究的教育机构的计算机实验室进行。积极对照组将进行纸笔认知训练,时间和强度与实验组相同。评估人员将对任务分配保密,参与者将对目标干预措施保密。将通过方差分析和多元回归进行假设检验,并采用逻辑回归评估社会经济变量对儿童成绩的影响。预计这些结果将有助于讨论认知训练计划为发育正常儿童的认知发展提供的机会和益处。
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引用次数: 0
Coupled analysis of arable land input intensity and output intensity based on sliding windows 基于滑动窗口的耕地投入强度和产出强度耦合分析
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-23 DOI: 10.1016/j.mex.2024.102862

Sustainable intensification (SI) of agriculture can produce more food to meet the demand of a growing population while considering ecosystem health. The current SI estimation framework ignores the complex coupling between input and output intensity of arable land. A method for coupled analysis of arable land input intensity and output intensity based on sliding windows is proposed. By calculating the correlation coefficient and partial correlation coefficient between input intensity and output intensity in different value ranges as the order parameter, the phase transition and the influence process of input intensity on output intensity can be explained. Meanwhile, a python-based framework is developed.

An application of the method was made to reveal the interaction process between annual provincial input intensity and output intensity in mainland China. Researchers in many fields may benefit from the method by obtaining a fast way to analysis the coupling relationship between driving and dependent variables in complex systems.

  • New method for SI estimation is presented.

  • The order parameter of the coupling relationship between input and output intensity is calculated based on sliding windows.

  • Analysis of coupling relationships between driving and dependent variables in complex systems.

农业可持续集约化(SI)可以生产更多的粮食,满足不断增长的人口需求,同时兼顾生态系统健康。目前的 SI 估算框架忽略了耕地投入强度和产出强度之间复杂的耦合关系。本文提出了一种基于滑动窗口的耕地投入强度和产出强度耦合分析方法。通过计算输入强度和输出强度在不同值范围内的相关系数和偏相关系数作为阶次参数,解释了输入强度对输出强度的相变和影响过程。同时,开发了一个基于 python 的框架,并应用该方法揭示了中国大陆各省年度投入强度与产出强度之间的相互作用过程。该方法为复杂系统中驱动变量和因变量之间耦合关系的快速分析提供了一种新的方法,可使许多领域的研究人员从中受益。
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引用次数: 0
Variations in soil erodibility (K-factor) for the Chernozems depending on the method of texture determination 切尔诺泽姆地区土壤可侵蚀性(K 系数)的变化取决于质地测定方法
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-23 DOI: 10.1016/j.mex.2024.102876

Soil erodibility (K-factor) is an important parameter in erosion modeling, is one of five factors of the Revised Universal Soil Loss Equation (RUSLE), and generally represents the soil's response to rainfall and run-off erosivity. The erodibility could be determined based on direct measurements of soil properties and mathematical calculations. In this study, the K-factor was calculated based on a formula from RUSLE, proposed by Renard et al. (1997). All input parameters: soil organic carbon (SOC), soil structure, and permeability classes were measured by one method, but particle size distribution – in two ways by sedimentation and laser diffraction methods to assess the impact the K-factor variability and the values of soil erosion rates. The 107 soil samples of Chernozems from Kursk Oblast (Russia) were studied. The texture for the most of samples was classified as silty loam in both analyses. However, the laser diffraction underestimates the clay content by an average of 13.2 % compared to the pipette method. The average K-factor estimated based on laser diffraction data was 0.050, and 0.034 t ha h ha−1 MJ−1 mm−1 – sedimentation method. Thus, depending on the method of soil texture analysis, the RUSLE calculated soil loss could underestimated/overstated by 32 % (or 4 t ha-1 yr-1 on average in the study site). Therefore, we propose a regression equation-based conversion method of laser diffraction data to sedimentation method data for Chernozems.

  • The Laska-TM laser analyzer measured on ∼ 13 % less clay fraction (more on ∼ 8 % silt and ∼ 5 % fine sand) compared with sedimentation method data.

  • For erosional researchers/modelers it is suggested to state the method of soil texture analysis (based on sedimentation law or laser diffraction) was used for RUSLE K-factor calculations.

  • To convert K-factor values (for Chernozems) calculated and based on data of the sedimentation method to laser sedimentation – it suggested utilize the coefficient 1.47 (0.68 – vice versa).

土壤可侵蚀性(K 系数)是侵蚀模型中的一个重要参数,也是修订的通用土壤流失方程(RUSLE)中的五个因子之一,通常代表土壤对降雨和径流侵蚀性的反应。侵蚀性可通过直接测量土壤特性和数学计算来确定。在本研究中,K 系数是根据 Renard 等人(1997 年)提出的 RUSLE 公式计算得出的。所有输入参数:土壤有机碳 (SOC)、土壤结构和渗透性等级均通过一种方法测量,但粒度分布则通过沉积法和激光衍射法两种方法测量,以评估 K 因子的变化和土壤侵蚀率值的影响。对库尔斯克州(俄罗斯)切尔诺泽姆的 107 个土壤样本进行了研究。在两种分析中,大多数样本的质地都被归类为淤泥质壤土。然而,与吸管法相比,激光衍射法平均低估了 13.2 % 的粘土含量。根据激光衍射数据估算出的 K 因子平均值为 0.050,而根据沉积法估算出的 K 因子平均值为 0.034 t ha h ha-1 MJ-1 mm-1。因此,根据不同的土壤质地分析方法,RUSLE 计算出的土壤流失量可能会低估/高估 32%(或研究地点平均每年 4 吨/公顷-1)。因此,我们为切尔诺贝利提出了一种基于回归方程的激光衍射数据与沉积法数据的转换方法。-与沉积法数据相比,拉斯卡-TM 激光分析仪测量到的粘土成分减少了 13%(更多的是 8%的粉土和 5%的细沙)。-对于侵蚀研究人员/建模人员,建议说明在计算 RUSLE K 因子时使用的土壤质地分析方法(基于沉积法或激光衍射法)。-要将根据沉积法数据计算的 K 因子值(对于切尔诺泽姆)转换为激光沉积值,建议使用系数 1.47(0.68 - 反之亦然)。
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引用次数: 0
A multi-criteria analysis for Environmental Flow Assessment based on hydraulic modelling 基于水力模型的环境流量评估多标准分析
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-22 DOI: 10.1016/j.mex.2024.102874

Environmental Flow Assessment is crucial, when assessing the impact of water withdrawal on riverine habitat. Still, standard methods to tackle such exercise are not available hitherto, while several techniques were developed generally to be tailored ad hoc for the considered case study. Here, we propose a multi-criteria approach, usable to quantify Environmental Flow, and uncertainty thereby, basing upon a hydraulic model of the river, and habitat viability for a given target fish species. Six criteria are considered that gather 3 classes of constraints for fish development.

  • Geometric, and biological constraints Fish show to cherish specific areas of the river, changing with discharge level (criterion I), they need a least water level to move comfortably (criterion II), with some degree of interconnection along the whole river bed (criterion III).

  • Riverbed quality Fine sediments (criterion IV) and gravel (criterion V) would be washed away to avoid clogging of spawning areas, and to clean and reset the gap system.

  • Macro-benthos requirement (criterion VI) Benthic invertebrates, i.e. preys of target fish, need a minimum flow velocity to form a community. Finally, a table is generated to compare optimal values of each criterion, supporting the choice of a “globally viable” EF value.

在评估取水对河流生境的影响时,环境流量评估至关重要。然而,迄今为止还没有标准的方法来处理这项工作,而开发的几种技术一般都是针对所考虑的案例研究而特别定制的。在此,我们提出了一种多标准方法,可用于量化环境流量及其不确定性,该方法以河流水力模型和特定目标鱼类的栖息地可行性为基础。六项标准汇集了鱼类发展的三类制约因素: -几何和生物制约因素 鱼类会珍惜河流的特定区域,并随着排水量的变化而变化(标准 I),它们需要最低的水位才能舒适地移动(标准 II),并在一定程度上与整个河床相互连接(标准 III)。-大型底栖生物要求(标准 VI) 底栖无脊椎动物,即目标鱼类的猎物,需要最低流速才能形成群落。最后,生成一个表格,比较每个标准的最佳值,为选择 "全球可行 "的 EF 值提供支持。
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引用次数: 0
Peltier-based temperature regulation: A method for performance optimization in solid-state lasers 基于珀尔帖的温度调节:固态激光器性能优化方法。
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-21 DOI: 10.1016/j.mex.2024.102873

This article presents a direct method for temperature control in solid-state lasers, where temperature stability is crucial for optimizing the performance and reliability of such lasers. The proposed method utilizes Peltier chips for both cooling and heating the laser crystal to achieve precise temperature regulation.

The system design is based on the step response of the open-loop thermal system and employs a proportional-integral (PI) controller for closed-loop temperature control. Comprehensive testing on a femtosecond Titanium-Sapphire Laser (Ti:Sapphire laser) demonstrated that the system is capable of maintaining the desired operating temperature with remarkable stability and efficiency, highlighting its practicality for real-world applications.

Method Outline:

  • Utilization of Peltier chips for precise temperature control.

  • Estimation of first-order transfer function based on step response.

  • Implementation of a proportional-integral (PI) controller for closed-loop temperature regulation.

本文提出了一种用于固态激光器温度控制的直接方法,温度稳定性对于优化此类激光器的性能和可靠性至关重要。系统设计基于开环热系统的阶跃响应,并采用比例积分(PI)控制器进行闭环温度控制。在飞秒钛-蓝宝石激光器(Ti:Sapphire Laser)上进行的综合测试表明,该系统能够以出色的稳定性和效率保持所需的工作温度,突出了其在实际应用中的实用性。
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引用次数: 0
Shirt-color recognition for the color-blindness 识别衬衫颜色的 "色盲"]......
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-21 DOI: 10.1016/j.mex.2024.102866

Color-blind is a generic disability whereby the affected individuals are not given the opportunity to benefit from the various functions provided by color that would impact humans physically and psychologically. Although this disability is not fatal, it brought plenty of turbulence in the affected individuals’ daily activities. This paper aims to develop a system for recognizing and detecting colors of clothes in images, improve accuracy by using advanced algorithms to handle lighting variations, and provide color matching recommendations to assist color-blind individuals in making informed choices when purchasing shirts. The proposed methodology for color recognition involves:

  • retrieving the RGB values of a given point from the input image and converting them into HSV values.

  • creating web application integrated with a machine learning model to classify and predict the corresponding color based on the HSV values.

  • predicting the color name with suggestions of matching colors will be displayed on the interface.

色盲是一种通用残疾,受影响的人没有机会从颜色提供的各种功能中受益,而这些功能会对人类的生理和心理产生影响。虽然这种残疾并不致命,但它给患者的日常活动带来了很多麻烦。本文旨在开发一种识别和检测图像中衣服颜色的系统,通过使用先进的算法处理光照变化来提高准确性,并提供颜色匹配建议,以帮助色盲者在购买衬衫时做出明智的选择。所提出的颜色识别方法包括:-从输入图像中检索给定点的 RGB 值,并将其转换为 HSV 值;-创建集成了机器学习模型的网络应用程序,根据 HSV 值对相应颜色进行分类和预测;-预测颜色名称,并在界面上显示配色建议。
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引用次数: 0
Automated image processing algorithm for 3D OCT images of fouling in spacer-filled membrane filtration channels 间隔填充膜过滤通道污垢三维 OCT 图像的自动图像处理算法
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-20 DOI: 10.1016/j.mex.2024.102871

OCT imaging is an important technique to study fouling in spacer-filled channels of reverse osmosis systems for seawater desalination. However, OCT imaging of membrane filtration channels with feed spacers is challenging because the spacer material can be (partly) transparent, making it difficult to detect and possibly mistaken for fouling, and the longer optical pathway through the spacer material distorts the image below the spacer. This study presents an automated 3D OCT image processing method in MATLAB for visualization and quantification of biofouling in spacer-filled channels. First, a spacer template of arbitrary size and rotation was generated from a CT scan of the feed spacer. Second, background noise and file size were reduced by representing the OCT image with a list of discrete reflectors. Finally, the spacer template was overlayed with the feed spacer in the 3D OCT image, enabling automated visualization of the feed spacer and correction of the distortions. Moreover, the method allows the selection of datasets with the same location relative to the position of the spacer, enabling systematic comparison between datasets and quantitative analysis.

  • A spacer template of arbitrary size and rotation was generated from a CT scan.

  • The background noise was removed, and the file size was reduced by representing the OCT dataset with a list of discrete reflectors.

  • The spacer template was overlayed with the feed spacer in the 3D OCT image.

OCT 成像是研究海水淡化反渗透系统中充满间隔物的通道污垢的重要技术。然而,对带有进料隔层的膜过滤通道进行 OCT 成像具有挑战性,因为隔层材料可能是(部分)透明的,使其难以检测并可能被误认为是污垢,而且穿过隔层材料的较长光路扭曲了隔层下方的图像。本研究在 MATLAB 中提出了一种自动三维 OCT 图像处理方法,用于可视化和量化充满间隔物的通道中的生物污垢。首先,根据进样间隔物的 CT 扫描结果生成任意大小和旋转的间隔物模板。其次,用离散反射体列表来表示 OCT 图像,从而减少了背景噪声和文件大小。最后,在三维 OCT 图像中将馈源间隔模板与馈源间隔叠加,从而实现了馈源间隔的自动可视化和畸变校正。此外,该方法还可以选择与间隔物位置相对应的相同位置的数据集,从而实现数据集之间的系统比较和定量分析。
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引用次数: 0
Smart grid data compression and reconstruction by wavelet packet transform 利用小波包变换进行智能电网数据压缩和重构
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-20 DOI: 10.1016/j.mex.2024.102872

A smart grid is a power network from generation to consumers and provides beneficial, steady, and safe electricity. It utilizes smart meters for billing, phasor measurement units to check the system's health., etc. As a result, it contains enormous volumes of real-time data that may be shared and stored by users, control centers, and services in a smart grid. It weakens the smart grid's communication networks. The size of the data in a smart grid will grow extremely in the future. As a result, it must reduce distortion in data compression and denoise while minimizing the demand on storage and communication networks. The goal of data compression and denoising should be to maximally conserve the useful data while accurately reflecting the state of the system and providing sufficient data regeneration at the receiving end. This paper has used lower-order different wavelets to represent a design to compress and reconstruct data at level three using wavelet Packet Transform. It works on the phasor measurement unit's current magnitude and voltage sag signals.

  • The proposed design has a better compression ratio.

  • Low reconstruction error.

  • This design is easy to access, systematic, profitable, and not time-consuming.

智能电网是一个从发电厂到用户的电力网络,提供有益、稳定和安全的电力。它利用智能电表计费,利用相位测量单元检查系统健康状况等。因此,它包含了大量的实时数据,这些数据可能会被智能电网中的用户、控制中心和服务共享和存储。它削弱了智能电网的通信网络。未来,智能电网中的数据规模将极速增长。因此,必须在数据压缩和去噪中减少失真,同时尽量减少对存储和通信网络的需求。数据压缩和去噪的目标应该是最大限度地保存有用数据,同时准确反映系统状态,并在接收端提供足够的数据再生。本文使用低阶不同的小波来表示一种设计,利用小波包变换来压缩和重建三级数据。它适用于相量测量单元的电流幅值和电压下陷信号。该设计具有较好的压缩比,重建误差小,易于获取、系统性强、收益高且不耗时。
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引用次数: 0
Corrigendum to “A user-friendly method for estimating discrete choice land-use model in a panel data setting” [MethodsX 13 (2024) 102841] "面板数据环境下离散选择土地利用模型的用户友好估计方法"[MethodsX 13 (2024) 102,841] 更正
IF 1.6 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-07-19 DOI: 10.1016/j.mex.2024.102869
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引用次数: 0
期刊
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