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Analysis of the impact of irradiance and temperature on photovoltaic production: A statistical and machine learning approach. 辐照度和温度对光伏生产的影响分析:统计和机器学习方法。
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-07 eCollection Date: 2025-12-01 DOI: 10.1016/j.mex.2025.103716
El Hadji Mbaye Ndiaye, Alphousseyni Ndiaye, Mactar Faye, Daouda Gueye, Amadou Ba, Mamadou Traore

This study explores the influence of solar irradiance (Ir) and ambient temperature (T) on photovoltaic (PV) production (P) by combining statistical analysis and deep learning techniques. A strong positive correlation was found between irradiance and PV output with Pearson coefficient (R=0.9211), while temperature exhibited a moderate effect (R=0.4477). A two-way analyze of variance (ANOVA) confirmed the statistical significance of these environmental factors. Furthermore, an autoencoder-based model was developed to capture complex nonlinear relationships and outperformed classical regression models in terms of accuracy and generalization. These results highlight the potential of machine learning methods for improving the understanding and optimization of PV systems in variable climatic conditions. Combines statistical analysis and deep learning to assess PV production factors Employs an autoencoder model to capture nonlinear relationships more effectively The model integrates a new interaction term I r . T that increases sensitivity to joint environmental variations.

本研究结合统计分析和深度学习技术,探讨太阳辐照度(Ir)和环境温度(T)对光伏(PV)产量(P)的影响。辐照度与PV输出呈显著正相关(R=0.9211),而温度对PV输出的影响较小(R=0.4477)。双向方差分析(ANOVA)证实了这些环境因素的统计学显著性。此外,开发了一种基于自编码器的模型来捕获复杂的非线性关系,并在精度和泛化方面优于经典回归模型。这些结果突出了机器学习方法在提高对可变气候条件下光伏系统的理解和优化方面的潜力。采用自编码器模型更有效地捕捉非线性关系,该模型集成了一个新的交互项I r。这增加了对关节环境变化的敏感性。
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引用次数: 0
An oligo-swapping method: preparation of mismatch repair-monitoring substrate using a nicking endonuclease 寡核苷酸交换方法:利用缺口核酸内切酶制备错配修复监测底物
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-07 DOI: 10.1016/j.mex.2025.103715
Arato Takedachi, Mika Hayashida, Isao Kuraoka
Mismatch repair (MMR) contributes to accurate DNA replication by eliminating mismatched bases during DNA synthesis. Its importance is underscored by Lynch syndrome, a common hereditary colorectal cancer syndrome caused by MMR gene mutations. Therefore, quantification of MMR activity in human cells is important for diagnostic and therapeutic purposes.
To monitor MMR, we established a novel DNA plasmid, pBluescript II NLS-MC-EGFP-tdTomato (pBET2). After processing using our protocol called the oligo swapping method, the mismatch included in the pBET2 enables us to evaluate the MMR proficiency of living cells by detecting specific fluorescent markers. Since the method simply “swaps” short single-stranded DNA to create a single mismatch on a specific site of the plasmid, it is significantly easier and more user-friendly. Briefly, the nicking endonuclease Nt.BbvCI produces a short single-stranded DNA region in the pBET2. Swapping is achieved by filling the region with a mismatched oligonucleotide, and T4 DNA ligase seals the gap. To isolate the mismatch substrate, the restriction enzyme SpeI-HF and T5 exonuclease clean up all contaminants, such as non-mismatch and/or non-covalently closed circular DNA substrates. Finally, the nicking endonuclease Nt.BspQI induces a nick on the final mismatch substrates that enhances the MMR reaction specifically on the target strand.
● This experimental method allows for the easy preparation of mismatched DNA substrates, in contrast to conventionally complex methods.
● This method enables the specific and efficient evaluation of MMR activity in living cells by using the mismatch substrate, a fluorescent marker.
● This method is applicable not only to MMR but also to the preparation of substrates for other DNA repair pathways, making it a valuable resource for both in vitro and in vivo experiments.
错配修复(MMR)通过消除DNA合成过程中不匹配的碱基,有助于准确的DNA复制。Lynch综合征,一种由MMR基因突变引起的常见遗传性结直肠癌综合征,强调了其重要性。因此,人类细胞中MMR活性的定量对诊断和治疗具有重要意义。为了监测MMR,我们建立了一个新的DNA质粒pBluescript II NLS-MC-EGFP-tdTomato (pBET2)。在使用我们称为寡核苷酸交换方法的协议处理后,pBET2中包含的不匹配使我们能够通过检测特定的荧光标记来评估活细胞的MMR熟练程度。由于该方法只是简单地“交换”短单链DNA,在质粒的特定位点上产生单个不匹配,因此它明显更容易和更用户友好。简单地说,核酸内切酶Nt.BbvCI在pBET2中产生短的单链DNA区域。交换是通过用不匹配的寡核苷酸填充该区域来实现的,T4 DNA连接酶密封了间隙。为了分离错配底物,限制酶SpeI-HF和T5外切酶清除所有污染物,如非错配和/或非共价闭合的环状DNA底物。最后,缺口内切酶Nt.BspQI在最终的错配底物上诱导缺口,从而特异性地增强靶链上的MMR反应。●与传统复杂的方法相比,该实验方法可以轻松制备不匹配的DNA底物。●该方法通过使用失配底物(一种荧光标记物),能够对活细胞中的MMR活性进行特异性和高效的评估。●该方法不仅适用于MMR,也适用于其他DNA修复途径的底物制备,是体外和体内实验的宝贵资源。
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引用次数: 0
Testing grain size dependent variability of cosmogenic nuclide concentrations for isochron burial dating of fluvial sediment (Pannonian Basin, Hungary). 测试宇宙形成核素浓度的粒度依赖性变异性,用于河流沉积物等时线埋藏测年(匈牙利潘诺尼亚盆地)。
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-07 eCollection Date: 2025-12-01 DOI: 10.1016/j.mex.2025.103708
Zsófia Ruszkiczay-Rüdiger, Gábor Csillag, Alexander Wieser, Oscar Marchhart, Mihály Braun, László Fodor

In this study a new approach of cosmogenic radionuclide (CRN) isochron burial dating was developed for locations where the maximum clast size of the sediment does not reach the size of using single cobble samples. This modification makes use of the presumption that different grain size fractions have diverse pre-burial histories and thus are deposited with diverse amount of CRNs. Accordingly, a bulk sample is taken at a certain sediment depth, from which several grain size fractions are selected. These are treated as individual samples for isochron burial age determination. To test our hypothesis, a fluvial sediment succession of the Paleo-Danube River in the Western Pannonian Basin, with an assumed Pliocene age was sampled at two sample depths. The different grain size fractions (0.25-0.5; 1-2; 4-8; 10-20; and 40-60 mm; n=7) provided variable 26Al and 10Be concentrations, supporting the validity of our assumption. The difference between the lowest and largest concentrations was limited making age determination and outlier identification more challenging compared to an isochron with more variable CRN concentrations. After a careful outlier identification, χ2 minimisation inverse modelling yielded 3.9 ± 0.7 Ma as the age of fluvial sedimentation. The offered sampling strategy opens a window towards further application of the CRN isochron burial dating. The burial age of fluvial sediments that were hitherto undatable due to their limited thickness and small clast size can be determined. After the presented adjustment of the sampling strategy the age of deposition can be calculated by the standard ways of isochron burial dating.

本研究提出了一种新的宇宙成因放射性核素(CRN)等时线埋藏测年方法,用于沉积物的最大碎屑尺寸不能达到单个鹅卵石样品的尺寸。这种修正利用了不同粒度组分具有不同的埋前历史的假设,从而沉积了不同数量的crn。因此,在一定的沉积物深度处采集大块样品,从中选择几个粒度分数。这些被当作单独的样品处理,用于等时线埋葬年龄的测定。为了验证我们的假设,我们在两个样本深度取样了西潘诺尼亚盆地古多瑙河的河流沉积物序列,并假设其为上新世。不同粒度组分(0.25-0.5、1-2、4-8、10-20和40-60 mm; n=7)提供了不同的26Al和10Be浓度,支持了我们假设的有效性。与具有更多可变CRN浓度的等时线相比,最低和最大浓度之间的差异是有限的,这使得年龄测定和离群值鉴定更具挑战性。经过仔细的离群值识别,χ2最小化逆模型得出河流沉积年龄为3.9±0.7 Ma。所提供的采样策略为CRN等时线埋藏定年的进一步应用打开了一扇窗。由于河流沉积物厚度有限,碎屑尺寸小,迄今无法确定其埋藏年代。在调整采样策略后,沉积物的年龄可以用等时线埋藏定年的标准方法来计算。
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引用次数: 0
The BCG in situ study - novel techniques applied to a 100-year-old vaccine. 卡介苗原位研究-应用于100年前疫苗的新技术。
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-07 eCollection Date: 2025-12-01 DOI: 10.1016/j.mex.2025.103712
Frederik Schaltz-Buchholzer, Ole Bæk, Amrit Singh, Elsi Cá, Isaquel da Silva, Peter Aaby, Christine Stabell Benn, Tobias R Kollmann, Nelly Amenyogbe

The use of Bacillus Calmette-Guérin (BCG) vaccine against tuberculosis (TB) spans more than a century. Besides protection against severe paediatric TB, randomized trials and novel advances within innate immunology documented that BCG has beneficial non-specific effects, providing protection against non-TB infections. Since paediatric intradermal BCG vaccination has proved unable to contain adult pulmonary tuberculosis, several novel TB vaccines are under development, most of which build upon BCG. BCG's status as an essential remedy against TB will therefore be maintained, but despite many decades of near-universal intradermal use, the local responses to BCG in the skin have not been thoroughly elucidated. We therefore developed appropriate methods to capture the localised skin events at the cellular and molecular level after intradermal BCG vaccination. This work informs future studies to identify the immunological events induced following administration of BCG to accelerate development of improved or new vaccines against Mycobacterium tuberculosis (Mtb). We employed advanced technologies such as spatial transcriptomics on skin tissue punch biopsies and cell-free plasma transcriptomics (liquid biopsies) to characterize both the local (in situ) skin and systemic (peripheral blood) response to BCG via:•Whole blood transcriptomics and epigenetic analysis•Blood immune cell characterization•Plasma proteomic and metabolomic analysis.

卡介苗(Bacillus calmette - gusamrin, BCG)预防结核病的使用已有一个多世纪的历史。除了预防严重儿童结核病外,随机试验和先天免疫学领域的新进展证明,卡介苗具有有益的非特异性作用,可预防非结核病感染。由于儿科皮内卡介苗接种已被证明不能控制成人肺结核,因此正在开发几种新型结核疫苗,其中大多数以卡介苗为基础。因此,卡介苗作为结核病基本治疗药物的地位将得到维持,但尽管几十年来几乎普遍皮内使用,皮肤对卡介苗的局部反应尚未得到彻底阐明。因此,我们开发了适当的方法,在皮内卡介苗接种后,在细胞和分子水平上捕捉局部皮肤事件。这项工作为未来的研究提供了信息,以确定接种卡介苗后引起的免疫事件,以加速开发针对结核分枝杆菌(Mtb)的改进或新疫苗。我们采用先进的技术,如皮肤组织穿刺活检的空间转录组学和无细胞血浆转录组学(液体活检),通过全血转录组学和表观遗传学分析、血液免疫细胞表征、血浆蛋白质组学和代谢组学分析来表征局部(原位)皮肤和全身(外周血)对卡介苗的反应。
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引用次数: 0
A practical method for mass quantification of microplastics in soil media using pyrolysis gas chromatography-mass spectrometry. 热解气相色谱-质谱法定量测定土壤介质中微塑料的实用方法。
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-05 eCollection Date: 2025-12-01 DOI: 10.1016/j.mex.2025.103711
Elham Faraji, Patricia Cabedo-Sanz, Ajit K Sarmah

Microplastic (MP) contamination in soil media presents growing analytical challenges. We introduce a validated method for MP mass quantification using pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS), targeting polyethylene (PE), polypropylene (PP), and polystyrene (PS) in synthetic and environmental soils. The method achieved low limits of detection (0.02-0.44 µg), strong linearity (R² > 0.995), and high recovery rates-86.1% (sandy), 90.7 % (loamy), and 99.6 % (sandy-loam). Cryomilling improved sample homogeneity and quantification accuracy (+3.2 %). Fourier transform infrared spectroscopy (FTIR) was used to confirm polymer identity with >85% match. The protocol was successfully applied to environmental samples from urban and agricultural soils in Auckland, New Zealand, demonstrating its robustness and field applicability. This practical workflow offers a reproducible, high-sensitivity approach suitable for routine microplastics monitoring across diverse soil matrices. Py-GC/MS method achieved over 90 % accuracy for microplastic quantification. Extraction protocols demonstrated recovery efficiencies of up to 99.6 % FTIR complemented Py-GC/MS, confirming polymer identification with >85 % accuracy.

土壤介质中的微塑料(MP)污染提出了越来越多的分析挑战。我们介绍了一种经过验证的利用热解-气相色谱/质谱(Py-GC/MS)对合成土壤和环境土壤中的聚乙烯(PE)、聚丙烯(PP)和聚苯乙烯(PS)进行MP质量定量的方法。该方法检出限低(0.02 ~ 0.44µg),线性度高(R²> 0.995),回收率为86.1%(砂质)、90.7%(壤土)、99.6%(砂质壤土)。低温研磨提高了样品的均匀性和定量精度(+ 3.2%)。傅里叶变换红外光谱(FTIR)证实了聚合物的身份,匹配度为b> 85%。该方案成功地应用于新西兰奥克兰城市和农业土壤的环境样本,证明了它的鲁棒性和现场适用性。这种实用的工作流程提供了一种可重复的、高灵敏度的方法,适用于不同土壤基质的常规微塑料监测。Py-GC/MS法测定微塑料的准确度达到90%以上。提取方案的回收率高达99.6%,FTIR与Py-GC/MS相辅,确认聚合物鉴定的准确度为约85%。
{"title":"A practical method for mass quantification of microplastics in soil media using pyrolysis gas chromatography-mass spectrometry.","authors":"Elham Faraji, Patricia Cabedo-Sanz, Ajit K Sarmah","doi":"10.1016/j.mex.2025.103711","DOIUrl":"10.1016/j.mex.2025.103711","url":null,"abstract":"<p><p>Microplastic (MP) contamination in soil media presents growing analytical challenges. We introduce a validated method for MP mass quantification using pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS), targeting polyethylene (PE), polypropylene (PP), and polystyrene (PS) in synthetic and environmental soils. The method achieved low limits of detection (0.02-0.44 µg), strong linearity (R² > 0.995), and high recovery rates-86.1% (sandy), 90.7 % (loamy), and 99.6 % (sandy-loam). Cryomilling improved sample homogeneity and quantification accuracy (+3.2 %). Fourier transform infrared spectroscopy (FTIR) was used to confirm polymer identity with >85% match. The protocol was successfully applied to environmental samples from urban and agricultural soils in Auckland, New Zealand, demonstrating its robustness and field applicability. This practical workflow offers a reproducible, high-sensitivity approach suitable for routine microplastics monitoring across diverse soil matrices. Py-GC/MS method achieved over 90 % accuracy for microplastic quantification. Extraction protocols demonstrated recovery efficiencies of up to 99.6 % FTIR complemented Py-GC/MS, confirming polymer identification with >85 % accuracy.</p>","PeriodicalId":18446,"journal":{"name":"MethodsX","volume":"15 ","pages":"103711"},"PeriodicalIF":1.9,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12664816/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145654482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Long term dataset of Eu isotope ratio of NIST3117a Eu standard solution determined via multi-collector inductively coupled plasma mass spectrometry during 2017-2024. 2017-2024年多收集器电感耦合等离子体质谱法测定NIST3117a Eu标准溶液Eu同位素比值的长期数据集
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-04 eCollection Date: 2025-12-01 DOI: 10.1016/j.mex.2025.103709
Seung-Gu Lee

This article provides an update to a previously published data article and associated data set regarding Eu isotope ratio of NIST3117a Eu chemical solution, determined over the period 2017-2024. The Eu isotope ratios were measured via MC-ICP-MS using various Sm isotope pairs -147Sm-149Sm, 147Sm-154Sm, 149Sm-154Sm and 150Sm-154Sm-based on the exponential law over the eight-year period. Measurements were conducted under both wet plasma conditions (using spray chamber) and dry plasma conditions (using Aridus II system). The mean δ¹⁵³Eu values for all Sm isotope pairs are close to 0 ‰, and their 2SD intervals include zero, indicating no systematic bias from the choice of Sm pair or the sample-introduction system. While the precision of δ¹⁵³Eu values for NIST 3117a varies slightly among different Sm isotope pairs, it remains generally consistent. These results demonstrate that Sm-based internal normalization yields robust and reproducible Eu isotope ratios by MC-ICP-MS. The dataset can serve as reference for studying Eu isotope fractionation in geological rocks and meteorites. 36 • No measurable bias in the Eu isotopic composition of the NIST 3117a standard solution is observed with respect to the selection of Sm isotope pairs for normalization or the sample introduction technique.

本文提供了对先前发表的关于NIST3117a Eu化学溶液Eu同位素比率的数据文章和相关数据集的更新,该数据集确定于2017-2024年期间。采用MC-ICP-MS方法,采用不同的Sm同位素对-147Sm-149Sm、147Sm-154Sm、149Sm-154Sm和150sm - 154sm进行了8年的Eu同位素比值测定。测量在湿等离子体条件下(使用喷雾室)和干等离子体条件下(使用Aridus II系统)进行。所有Sm同位素对的平均值δ¹³Eu值都接近0‰,其2SD区间包括零,表明Sm对或样品引入系统的选择没有系统偏差。虽然NIST 3117a的δ¹³Eu值的精度在不同的Sm同位素对之间略有不同,但总体上是一致的。这些结果表明,MC-ICP-MS基于sm的内归一化得到稳健且可重复的Eu同位素比值。该数据集可为研究地质岩石和陨石中的Eu同位素分异提供参考。36•在NIST 3117a标准溶液的Eu同位素组成中,对于Sm同位素对的选择进行归一化或样品导入技术,没有观察到可测量的偏差。
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引用次数: 0
Production of in situ mixed gas phase volatile organic compound standards for sorbent tube applications. 生产用于吸附管应用的原位混合气相挥发性有机化合物标准。
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-04 eCollection Date: 2025-12-01 DOI: 10.1016/j.mex.2025.103705
Ntoko M Leakwe, Werner Welthagen, Patricia B C Forbes

Volatile organic compounds (VOCs) are a significant class of air pollutants, as they pose a risk to human health and the environment. Precise quantification of VOCs sampled onto sorbent tubes requires gas phase standards at suitable concentrations. Herein, we present a: - gas standard preparation method for benzene, toluene, ethylbenzene and xylene (BTEX) prepared from liquid standards by means of evaporation and dynamic dilution with nitrogen - demonstration of the applicability of the LiqMix Cascade gas mix system. Repeatability and reproducibility were first successfully demonstrated via direct GC-MS analysis of generated gas mixtures. Then µg levels of generated gas standards were adsorbed onto sorbent tubes employed in active sampling and ng levels were collected onto Radiello cartridges used in passive sampling, followed by liquid extraction or thermal desorption and GC-MS analysis. Accuracy was verified by a BTEX certified reference material (99 % recovery). The LiqMix Cascade gas mix system was shown to produce precise and repeatable concentrations of BTEX gas phase standards for sorbent tube sampling applications for the first time.

挥发性有机化合物(voc)是一类重要的空气污染物,因为它们对人类健康和环境构成风险。在吸附管上取样的VOCs的精确定量需要合适浓度的气相标准。本文提出了一种以液体标准品为原料,采用蒸发和氮气动态稀释法制备苯、甲苯、乙苯和二甲苯(BTEX)气体标准品的方法,论证了LiqMix Cascade气体混合系统的适用性。通过直接气相色谱-质谱分析首次成功证明了生成气体混合物的重复性和再现性。然后将产生的气体标准品µg级吸附到用于主动采样的吸附管上,ng级收集到用于被动采样的Radiello筒上,然后进行液体萃取或热解吸和GC-MS分析。准确度由BTEX标准物质验证(回收率99%)。LiqMix Cascade气体混合系统首次被证明可以为吸附管取样应用产生精确且可重复的BTEX气相标准浓度。
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引用次数: 0
I-Kaz methodology for predicting tool life of AlCrN-Coated WC-Co inserts in the machining of AISI 304 steel. 预测aisi304钢加工中alcrn涂层WC-Co刀片刀具寿命的I-Kaz方法。
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-04 eCollection Date: 2025-12-01 DOI: 10.1016/j.mex.2025.103706
Mogana Priya Chinnasamy, Rajasekar Rathanasamy, Swetha R Kumar, Sathish Kumar Palaniappan

This study proposes a real-time tool wear monitoring approach for dry milling of AISI 304 stainless steel using a Microflown PU sensor and the I-Kaz™ statistical feature. A Taguchi L18 orthogonal array was adopted to optimize cutting speed, feed rate, depth of cut and tool type (uncoated and AlCrN-coated WC-Co inserts) based on surface roughness and flank wear responses. ANOVA revealed that tool type was the most significant factor, contributing approximately 85 % to flank wear variation, followed by depth of cut and cutting speed. The optimal combination: AlCrN-coated insert, cutting speed of 1250 rpm, depth of cut of 0.50 mm and feed rate of 0.04 mm/rev minimized both responses. The proposed I-Kaz-based monitoring approach established a strong inverse power-law relationship between the I-Kaz coefficient and flank wear Z2 α =a(VB)-n, achieving R2>0.96, indicating high accuracy and stability across repetitions.•This study introduces the first application of a Microflown PU sensor for near-field acoustic monitoring in milling operations.•The I-Kaz™ feature is demonstrated as a computationally efficient and accurate method for real-time tool wear prediction.•The research integrates cutting parameter optimization and predictive monitoring within a single experimental framework.

本研究提出了一种使用microfly PU传感器和I-Kaz™统计特征进行AISI 304不锈钢干铣削的实时刀具磨损监测方法。基于表面粗糙度和侧面磨损响应,采用田口L18正交阵列优化切削速度、进给速度、切削深度和刀具类型(未涂层和镀alcrn涂层WC-Co刀片)。方差分析显示,刀具类型是最重要的因素,约占侧面磨损变化的85%,其次是切削深度和切削速度。最佳组合:alcrn涂层刀片,切削速度为1250 rpm,切削深度为0.50 mm,进给速度为0.04 mm/rev,最大限度地减少了这两种反应。所提出的基于I-Kaz的监测方法在I-Kaz系数与翼面磨损Z2 α =a(VB)-n之间建立了很强的逆幂律关系,达到R2>0.96,表明了高准确度和跨重复的稳定性。•本研究首次介绍了microflew PU传感器在磨铣作业中的近场声学监测应用。•I-Kaz™功能被证明是一种计算效率高、准确的实时工具磨损预测方法。•该研究将切削参数优化和预测监测集成在一个实验框架内。
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引用次数: 0
Isolation, identification and optimization of biomass production of native Spirulina species from South of the Caspian Sea 里海南部原生螺旋藻的分离、鉴定和生物量生产优化
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-04 DOI: 10.1016/j.mex.2025.103707
Matin Shakoori , Reza Safari , Asieh Makhlough , Tahereh Bagheri
The aim of the present study was to identify the native Spirulina species from Caspian Sea and optimize the growth conditions of this microalgae in order to reduce costs and increase the benefits of its production. In this study, water sampling was carried out from a depth of 5 meters on the coast of south Caspian Sea (Iran) in 2023–2024. After observing the Spirulina genus, its microalgae were isolated and purified using the dilution method, and finally pure single colonies were obtained. Initial identification was carried out using a light microscope and valid identification keys. Molecular identification and 16 SrRNA sequencing were used to confirm and verify it. The results showed that the studied species has the least genetic distance from the microalgae Spirulina laxissima. Then, the effect of three physical factors, temperature (27–29 °C), light (3000–3500 lx) and pH (9–11), on its biomass production rate was investigated using the response surface methodology. The results obtained from the design of this experiment showed that the biomass amount on the seventh day was 0.382 (g/L) with pH=10, light 3250 lx and temperature 29 °C and on the fourteenth day the biomass amount reached 0.839 (g/L) and pH=10, light 3250 lx, temperature 29 °C.
  • Isolation of microalgae Spirulina laxissima from Caspian Sea.
  • Molecular identification Spirulina laxissima.
  • Optimizing of Spirulina laxissima culture with physical changes (temperature, light, pH).
本研究的目的是鉴定里海原生螺旋藻物种,并优化这种微藻的生长条件,以降低成本,提高其生产效益。在这项研究中,在2023-2024年期间,在南里海(伊朗)海岸的5米深处进行了水采样。对螺旋藻属进行观察后,采用稀释法对其微藻进行分离纯化,最终获得纯净的单菌落。使用光学显微镜和有效识别密钥进行初步鉴定。通过分子鉴定和16 SrRNA测序对其进行确认和验证。结果表明,本研究种与微藻螺旋藻的遗传距离最小。然后,利用响应面法研究了温度(27 ~ 29℃)、光照(3000 ~ 3500 lx)和pH(9 ~ 11) 3个物理因素对其生物量生产速率的影响。实验设计结果表明,在pH=10、光照3250 lx、温度29℃条件下,第7天生物量为0.382 (g/L),第14天生物量达到0.839 (g/L), pH=10、光照3250 lx、温度29℃条件下。•分子鉴定松驰螺旋藻。•利用物理变化(温度、光照、pH值)优化松弛螺旋藻培养。
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引用次数: 0
Development of an in-house, one-step RT-qPCR mix and optimized MS2 detection primers for hepatitis A virus and norovirus detection in berries 开发一种内部的一步RT-qPCR组合和优化的MS2检测引物,用于检测浆果中的甲型肝炎病毒和诺如病毒
IF 1.9 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-11-01 DOI: 10.1016/j.mex.2025.103703
Hui Zhi Low, Christina Böhnlein, Charles M.A.P. Franz
One-step, reverse transcriptase-quantitative PCR (RT-qPCR) is the primary method for detecting foodborne viruses in food matrices. The ISO 15216-2:2019 serves as the international standard for detecting human norovirus GI, GII, and hepatitis A virus. Some food matrices, such as berries, tend to co-purify PCR inhibitors with viral RNA, which can lead to false-negative results. To prevent this, the protocol includes extensive control approaches. However, the high cost of commercial RT-qPCR kits makes large-scale virus testing expensive and inaccessible. To address this, we developed an in-house, one-step RT-qPCR mix using commercial, next-generation enzymes with improved resistance to PCR inhibitors and with enhanced performance. The in-house mix offers a more cost-effective alternative to expensive and outdated commercial mixes. In this paper, we describe:
• the development of an in-house, one-step multiplexable RT-qPCR protocol and optimization process as a reference for laboratories seeking to develop their own in-house protocols.
• altered and optimized, previously described primers for the MS2 virus, further improving the efficiency of its detection and its reliability as a process control virus.
反转录定量PCR (RT-qPCR)是检测食品基质中食源性病毒的主要方法。ISO 15216-2:2019是检测人类诺如病毒GI、GII和甲型肝炎病毒的国际标准。一些食物基质,如浆果,倾向于与病毒RNA共同纯化PCR抑制剂,这可能导致假阴性结果。为了防止这种情况,协议包含了广泛的控制方法。然而,商业RT-qPCR试剂盒的高成本使得大规模病毒检测昂贵且难以实现。为了解决这个问题,我们开发了一种内部的一步RT-qPCR混合物,使用商业的下一代酶,这些酶对PCR抑制剂的抗性增强,性能增强。内部混合提供了一个更具成本效益的替代昂贵和过时的商业混合。在本文中,我们描述:•开发内部,一步多路RT-qPCR协议和优化过程,作为实验室寻求开发自己的内部协议的参考。•改变和优化了先前描述的MS2病毒引物,进一步提高了其检测效率和作为过程控制病毒的可靠性。
{"title":"Development of an in-house, one-step RT-qPCR mix and optimized MS2 detection primers for hepatitis A virus and norovirus detection in berries","authors":"Hui Zhi Low,&nbsp;Christina Böhnlein,&nbsp;Charles M.A.P. Franz","doi":"10.1016/j.mex.2025.103703","DOIUrl":"10.1016/j.mex.2025.103703","url":null,"abstract":"<div><div>One-step, reverse transcriptase-quantitative PCR (RT-qPCR) is the primary method for detecting foodborne viruses in food matrices. The ISO 15216-2:2019 serves as the international standard for detecting human norovirus GI, GII, and hepatitis A virus. Some food matrices, such as berries, tend to co-purify PCR inhibitors with viral RNA, which can lead to false-negative results. To prevent this, the protocol includes extensive control approaches. However, the high cost of commercial RT-qPCR kits makes large-scale virus testing expensive and inaccessible. To address this, we developed an in-house, one-step RT-qPCR mix using commercial, next-generation enzymes with improved resistance to PCR inhibitors and with enhanced performance. The in-house mix offers a more cost-effective alternative to expensive and outdated commercial mixes. In this paper, we describe:</div><div>• the development of an in-house, one-step multiplexable RT-qPCR protocol and optimization process as a reference for laboratories seeking to develop their own in-house protocols.</div><div>• altered and optimized, previously described primers for the MS2 virus, further improving the efficiency of its detection and its reliability as a process control virus.</div></div>","PeriodicalId":18446,"journal":{"name":"MethodsX","volume":"15 ","pages":"Article 103703"},"PeriodicalIF":1.9,"publicationDate":"2025-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145516626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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