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Genomic cradle for thousands. 数千人的基因组摇篮。
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-29 DOI: 10.1038/s41477-025-02215-2
Kenji Fukushima
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引用次数: 0
Long-distance transport of siRNAs with functional roles in pollen development 在花粉发育中具有功能作用的sirna的远距离转运
IF 18 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-28 DOI: 10.1038/s41477-026-02219-6
Jiali Zhu, Juan Santos-González, Zhenxing Wang, Tinja Strothans, Thales Henrique Cherubino Ribeiro, Ai Zhang, Charles W. Melnyk, Blake C. Meyers, Claudia Köhler
Small interfering RNAs (siRNAs) play a crucial role in plant reproduction, yet their mobility and function remain incompletely understood. We report that a large proportion of siRNAs found in pollen of Capsella rubella relies on mobile siRNAs from maternal sporophytic tissues, highlighting the importance of non-cell-autonomous siRNAs in male gametophyte development. Unlike tapetal siRNAs, which guide DNA methylation and require CLASSY3 and DNA-dependent RNA polymerase IV (Pol IV) activity in the tapetum, we found that Pol IV-dependent mobile siRNAs (PMsiRNAs) mainly function post-transcriptionally and do not guide DNA methylation. Nevertheless, PMsiRNAs share key features with tapetal siRNAs, including Pol IV dependency, clustering and a size range of 21–24 nucleotides. Using a grafting approach, we show that sporophytic Pol IV-dependent siRNAs act as non-cell-autonomous mobile signals that trigger PMsiRNA formation through post-transcriptional gene silencing. This process parallels reproductive phased siRNA biogenesis, which is widespread across angiosperms but has been considered absent in Brassicaceae. Loss of PMsiRNAs causes pollen arrest, underscoring their essential role. Together, these findings highlight siRNAs as long-distance communication signals from maternal sporophytic tissues to the male gametophyte with critical functions in developmental regulation.
小干扰rna (sirna)在植物繁殖中起着至关重要的作用,但它们的移动性和功能尚不完全清楚。我们报道了在风疹辣椒花粉中发现的很大一部分sinas依赖于来自母体孢子体组织的移动sinas,强调了非细胞自主sinas在雄性配子体发育中的重要性。与绒毡层sirna不同,绒毡层sirna引导DNA甲基化,需要CLASSY3和DNA依赖的RNA聚合酶IV (Pol IV)活性,我们发现Pol IV依赖的移动sirna (pmsirna)主要在转录后起作用,不引导DNA甲基化。然而,pmsirna与绒层sirna共享关键特征,包括Pol IV依赖性、聚类和21-24个核苷酸的大小范围。通过嫁接方法,我们发现孢子体Pol iv依赖性sirna作为非细胞自主的移动信号,通过转录后基因沉默触发PMsiRNA的形成。这一过程与生殖阶段siRNA生物发生相似,siRNA在被子植物中广泛存在,但在十字花科中被认为是不存在的。pmsirna的缺失导致花粉阻滞,强调了它们的重要作用。总之,这些发现强调了sirna作为从母体孢子体组织到雄性配子体的长距离通信信号,在发育调节中具有关键功能。
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引用次数: 0
Global functional shifts in trees driven by alien naturalization and native extinction 外来归化和本地灭绝驱动的树木全球功能转变
IF 18 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-28 DOI: 10.1038/s41477-025-02207-2
Wen-Yong Guo, Josep M. Serra-Diaz, Kun Guo, Coline C. F. Boonman, Franziska Schrodt, Brian S. Maitner, Cory Merow, Cyrille Violle, Madhur Anand, Hans Henrik K. Bruun, Chaeho Byun, Jane A. Catford, Bruno E. L. Cerabolini, Eduardo Chacón-Madrigal, Daniela Ciccarelli, Anh Tuan Dang-Le, Arildo S. Dias, Aelton B. Giroldo, Alvaro G. Gutiérrez, Steven Jansen, Jens Kattge, Roeland Kindt, Tamir Klein, Koen Kramer, Christopher H. Lusk, Adam R. Martin, Sean T. Michaletz, Vanessa Minden, Akira S. Mori, Ülo Niinemets, Yusuke Onoda, Josep Peñuelas, Jan Pisek, Bjorn J. M. Robroek, Brandon Schamp, Nadejda A. Soudzilovskaia, Nelson Thiffault, Fons van der Plas, Brian J. Enquist, Jens-Christian Svenning
Human activities are driving simultaneous native extinctions and alien naturalizations, reshaping global tree diversity with major implications for ecosystem structure and function. Here we analysed functional traits and environmental niches of 31,001 tree species worldwide, comparing naturalized, threatened and non-threatened species to assess current patterns and project future shifts under intensified extinction and naturalization. Future tree-rich ecosystems are projected to become increasingly dominated by fast-growing, high-resource-use species with acquisitive traits, while slow-growing, conservative species face greater extinction risk. Although group means along the main functional axes do not differ significantly, naturalized species occupy broader functional and environmental spaces and thrive in colder and more variable climates, whereas threatened species are more specialized to warm, stable and nutrient-rich environments, with non-threatened species intermediate. Projected naturalizations expand local functional diversity, but their acquisitive strategies could reduce long-term ecosystem stability, while extinctions cause pronounced contractions of functional and environmental trait space, especially in climatically variable regions. Overall, our findings reveal an accelerating global shift towards faster-growing tree communities, with likely consequences for carbon storage and biodiversity, underscoring the need to safeguard slow-growing species and limit the dominance of acquisitive trees.
人类活动正在同时推动本地灭绝和外来归化,重塑全球树木多样性,对生态系统的结构和功能产生重大影响。本文分析了全球31,001种树种的功能特征和环境生态位,比较了归化、受威胁和未受威胁的树种,以评估当前的模式,并预测在灭绝和归化加剧的情况下未来的变化。预计未来树木丰富的生态系统将越来越多地由具有获取特征的快速生长、资源利用高的物种主导,而缓慢生长、保守的物种将面临更大的灭绝风险。虽然沿主要功能轴的类群方式没有显著差异,但归化物种占据更广泛的功能和环境空间,在更寒冷和更多变的气候中茁壮成长,而受威胁物种则更专门于温暖、稳定和营养丰富的环境,非受威胁物种处于中间位置。预计的归化扩大了当地的功能多样性,但它们的获取策略可能会降低生态系统的长期稳定性,而灭绝会导致功能和环境特征空间的明显收缩,特别是在气候多变的地区。总体而言,我们的研究结果揭示了全球加速向快速生长的树木群落转变,这可能对碳储存和生物多样性产生影响,强调了保护缓慢生长物种和限制获取树木主导地位的必要性。
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引用次数: 0
Crystal ball time 水晶球时间
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-23 DOI: 10.1038/s41477-026-02229-4
The great physicist Niels Bohr is reported to have said that “prediction is very difficult, especially about the future”, but that should not stop us trying to guess what 2026 might bring.
据报道,伟大的物理学家尼尔斯·玻尔(Niels Bohr)曾说过“预测非常困难,尤其是预测未来”,但这不应阻止我们尝试猜测2026年可能会发生什么。
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引用次数: 0
Creating a new oilseed crop, pennycress, by combining key domestication traits using CRISPR genome editing 利用CRISPR基因组编辑技术,结合关键的驯化特性,培育出一种新的油籽作物——pennycrea
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-22 DOI: 10.1038/s41477-025-02202-7
Barsanti Gautam, Brice A. Jarvis, Maliheh Esfahanian, Michaela McGinn, Dalton Williams, Shengjun Liu, Mary E. Phippen, Nicholas J. Heller, Tad L. Wesley, Winthrop B. Phippen, Tim Ulmasov, M. David Marks, Ratan Chopra, John C. Sedbrook
Considerable off-season farmland lies fallow because few crops can profitably fit between primary crops. As a remedy, we performed de novo domestication of the freeze-tolerant, rapid-cycling wild brassica Thlaspi arvense L. (field pennycress), identifying and stacking CRISPR–Cas9-induced mutations that have minimal impacts on seed yields. High-yielding varieties were created with seed compositions such as ‘double-low’ canola (low erucic acid and reduced glucosinolate) and reduced seed fibre content. Seed glucosinolate content was reduced by 75% by combining mutations in R2R3-MYB (MYB28/HAG1) and basic helix–loop–helix MYC (MYC3) transcription factors. Pennycress weediness was greatly reduced by knockout of the basic helix–loop–helix transcription factor TRANSPARENT TESTA8 (TT8), which lowered seed dormancy and seed coat protections, thereby mitigating re-emergence in fields. Domesticated pennycress offers farmers a low-carbon-intensity intermediate crop that fits between two full-season summer crops, resulting in three cash crops in 2 years, conferring cover-crop-like ecosystem benefits while producing grain for renewable fuels and enhanced food security. De novo domestication was performed on the brassica Thlaspi arvense (pennycress) by identifying and stacking CRISPR-induced mutations to create a new intermediate oilseed crop that can be grown in the off-season, with seed compositions similar to canola (low erucic acid and reduced glucosinolate).
相当多的淡季农田休耕,因为很少有作物可以在主要作物之间种植。作为补救措施,我们对耐寒、快速循环的野生芸芥进行了重新驯化,鉴定并叠加了crispr - cas9诱导的突变,这些突变对种子产量的影响最小。高产品种的种子成分,如“双低”油菜籽(低芥酸和还原性硫代葡萄糖苷)和降低种子纤维含量。R2R3-MYB (MYB28/HAG1)和基本螺旋-环-螺旋MYC (MYC3)转录因子组合突变使种子硫代葡萄糖苷含量降低75%。通过敲除基本的螺旋-环-螺旋转录因子TRANSPARENT TESTA8 (TT8),大大减少了pennyweed,降低了种子休眠和种皮保护,从而减少了田间的重新出现。驯化的矢车菊为农民提供了一种低碳强度的中间作物,介于两种全季夏季作物之间,在两年内产生三种经济作物,在为可再生燃料生产粮食和加强粮食安全的同时,赋予覆盖作物类似的生态效益。通过鉴定和积累crispr诱导的突变,对芸苔(pennycrese)进行了重新驯化,创造了一种新的中间油籽作物,可以在淡季种植,其种子成分类似于油菜(低芥酸和还原性硫代葡萄糖苷)。
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引用次数: 0
ATG5–HSP90.2-mediated micromitophagy as a cytological basis for maternal inheritance of plant mitochondria atg5 - hsp90.2介导的微线粒体自噬是植物线粒体母系遗传的细胞学基础
IF 18 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-21 DOI: 10.1038/s41477-025-02216-1
Xiaorong Huang, Linlin Zhao, Zonglin Liu, Ni Long, Wenxuan Zou, Feng Gong, Tianhe Cheng, Ce Shi, Xuecheng Zhang, Wei Wang, Hong Chen, Alice Y. Cheung, Meng-Xiang Sun
Mitochondria are inherited maternally in most plants as a classical paradigm of non-Mendelian inheritance, but the mechanism underlying paternal mitochondrial elimination (PME) remains almost unknown. We report here that angiosperms have evolved micromitophagy-mediated PME, in which vacuoles directly engulf paternal mitochondria via tonoplast invagination. We show that micromitophagy occurs specifically in male germline (MG) cells. To gain mechanistic insights, we used a vegetative-to-germline cell fate transition system to establish that micromitophagy is triggered by MG cell fate determination. We found evidence that ATG5 is translocated to vacuoles upon MG-cell-fate determination and interacts with mitochondrion-located HSP90.2 during mitochondrial engulfment by vacuoles, elucidating a cell-type-specific ATG neofunctionalization to mediate micromitophagy. This mechanism not only contributes to maternal inheritance of plant mitochondria but also supports the zygote-to-embryo transition. We further determined that micromitophagy is conserved in angiosperms but was continually optimized during evolution to support the best functioning of PME in MG cells with different properties. These findings bridge a long-standing gap in understanding plant PME with emerging mechanistic knowledge.
在大多数植物中,线粒体作为一种经典的非孟德尔遗传模式被母系遗传,但父系线粒体消除(PME)的机制仍然几乎未知。我们在这里报道被子植物已经进化出微线粒体自噬介导的PME,其中液泡通过线粒体内翻直接吞噬父系线粒体。我们发现微丝自噬特异性地发生在雄性种系(MG)细胞中。为了获得机制的见解,我们使用了一个植物细胞到种系细胞命运转变系统来确定微丝自噬是由MG细胞命运决定触发的。我们发现有证据表明,ATG5在mg细胞命运决定时易位到液泡中,并在液泡吞噬线粒体时与位于线粒体的HSP90.2相互作用,阐明了细胞类型特异性的ATG新功能介导微线粒体自噬。这一机制不仅有助于植物线粒体的母系遗传,而且支持合子向胚胎的转变。我们进一步确定,微丝自噬在被子植物中是保守的,但在进化过程中不断优化,以支持PME在不同性质的MG细胞中的最佳功能。这些发现弥合了理解植物PME与新兴机械知识的长期差距。
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引用次数: 0
How the florigen activation complex orchestrates flowering. 花原激活复合体如何协调开花。
IF 18 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-21 DOI: 10.1038/s41477-026-02226-7
Xu Li,Hongtao Liu
{"title":"How the florigen activation complex orchestrates flowering.","authors":"Xu Li,Hongtao Liu","doi":"10.1038/s41477-026-02226-7","DOIUrl":"https://doi.org/10.1038/s41477-026-02226-7","url":null,"abstract":"","PeriodicalId":18904,"journal":{"name":"Nature Plants","volume":"31 1","pages":""},"PeriodicalIF":18.0,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146015331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A CRISPR-based sequence proximity binding protein labelling system for scanning upstream regulatory proteins. 基于crispr的序列接近结合蛋白标记系统,用于扫描上游调节蛋白。
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-19 DOI: 10.1038/s41477-025-02212-5
Lei Zhang, Chengcheng Cai, Qiujie Chen, Xiaoxu Tan, Shumin Chen, Kang Zhang, Feng Cheng

Transcriptional regulation involves complex and dynamic protein-DNA interactions, which alter chromatin states and, consequently, regulate gene expression. In plants, current technologies face challenges in efficiently capturing dynamically DNA-binding proteins, especially transcription factors. Here, by leveraging the binding ability of dead Cas9 to specific DNA fragments and the labelling capacity of the TurboID protein for adjacent proteins, we have developed a CRISPR-based sequence proximity binding protein labelling system (CSPL) to detect promoter-binding proteins. Using this approach, we identified both known and novel upstream binding proteins on the PIF4 promoter in Arabidopsis, cabbage and rice. This demonstrates the powerful capabilities and broad potential applications of CSPL for detecting promoter-binding proteins in plants.

转录调控涉及复杂和动态的蛋白质- dna相互作用,改变染色质状态,从而调节基因表达。在植物中,目前的技术在有效捕获动态dna结合蛋白,特别是转录因子方面面临着挑战。通过利用死亡Cas9与特定DNA片段的结合能力和TurboID蛋白对邻近蛋白的标记能力,我们开发了一种基于crispr的序列邻近结合蛋白标记系统(CSPL)来检测启动子结合蛋白。利用这种方法,我们在拟南芥、白菜和水稻中鉴定了PIF4启动子上已知的和新的上游结合蛋白。这证明了CSPL在检测植物启动子结合蛋白方面的强大能力和广阔的应用前景。
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引用次数: 0
Root-knot nematode Meloidogyne incognita uses secondary-metabolite-mediated soil microbiome shifts to locate host plants. 根结线虫利用次生代谢物介导的土壤微生物群变化来定位寄主植物。
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-19 DOI: 10.1038/s41477-025-02205-4
Zhenwei Wu, Zilin Liu, Wenjie Wang, Shiyuan Zhang, Allen Yi-Lun Tsai, Jose L Lozano-Torres, Shinichiro Sawa, Liqun Zhang, Songcan Chen, Xiaofei Lv, Matthias Erb, Jianming Xu, Lingfei Hu

Plant-parasitic nematodes are among the most destructive soil-dwelling pests, posing severe threats to global agriculture. However, the interplay between plant metabolites, rhizosphere microorganisms and their potential role in guiding pathogenic nematodes to their hosts remains poorly understood. Here we explored this gap by investigating the role of benzoxazinoids (BXs), a class of defensive metabolites of maize plants, in influencing the host-seeking behaviour of root-knot nematodes (RKNs). Our findings revealed that, surprisingly, BXs secreted by maize roots, particularly 6-methoxy-benzoxazolin-2-one, not only enhance RKN infection but also serve as powerful attractants. Remarkably, BX effects were observed only in the presence of a soil matrix. Further analysis demonstrated that 6-methoxy-benzoxazolin-2-one modulates the abundance and composition of rhizosphere bacteria, which in turn play a crucial role in RKN attraction and infection. We discovered that rhizosphere bacteria of BX-producing plants emit volatile compounds such as methyl ketones and 2-phenylethanol, which are then used by RKNs to locate host plants. RKNs detect these volatiles through chemosensory genes, including Mi-odr-1, Mi-odr-7 and Mi-gpa-6. Our study provides mechanistic insights into how RKNs use secondary-metabolite-shaped plant-microbe interactions to enhance their host-seeking behaviour and maximize their performance.

植物寄生线虫是最具破坏性的土壤栖息害虫之一,对全球农业构成严重威胁。然而,植物代谢物与根际微生物之间的相互作用及其在引导病原线虫到达宿主中的潜在作用仍然知之甚少。在这里,我们通过研究玉米植物的一类防御性代谢物苯并恶嗪类化合物(BXs)在影响根结线虫(RKNs)寻找宿主行为中的作用来探索这一空白。研究结果表明,玉米根系分泌的BXs,尤其是6-甲氧基苯并恶唑啉-2- 1,不仅能促进RKN感染,而且是一种强大的引诱剂。值得注意的是,只有在土壤基质存在的情况下才观察到BX效应。进一步分析表明,6-甲氧基苯并恶唑啉-2- 1调节根际细菌的丰度和组成,从而在RKN吸引和感染中起关键作用。我们发现,产bx植物的根际细菌会释放挥发性化合物,如甲基酮和2-苯乙醇,这些化合物随后被rkn用来定位寄主植物。RKNs通过化学感觉基因检测这些挥发物,包括Mi-odr-1、Mi-odr-7和Mi-gpa-6。我们的研究提供了RKNs如何利用次生代谢物形状的植物-微生物相互作用来增强其寻找宿主行为并最大化其性能的机制见解。
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引用次数: 0
Esterified-pectin-coupled polar stiffening controls grass stomatal opening 酯化果胶偶联极性硬化控制草气孔开放
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-15 DOI: 10.1038/s41477-025-02194-4
Tian Zhang, Lu Yu, Yueyuan Wang, Pan Li, Xiaoyan Feng, Guoliang Jian, Fengqi Zhao, Xuejiao Liu, Zhen Yang, Xiaoqian Sha, Yongqi Wang, Lingyu Mi, Wan Sun, Tingting Wei, Siyi Guo, Changqing Zhang, Zhi Li, Chun-Peng Song
Stomata are pivotal for gas exchange during photosynthesis and transpiration and are therefore critical in plant growth and global water cycles. However, the mechanistic role of cell wall architecture in grass stomatal function remains elusive. Here immunolabelling and mechanical mapping revealed local distribution of methylesterified pectin at the stiffer polar ends of maize stomata. Expression-knockdown maize with reduced pectin labelling showed decreased polar stiffness and increased stomatal aperture. Finite element modelling corroborated these findings, suggesting that in contrast to non-grass stomata, the size and modulus of the polar materials limit maize stomatal opening. Surveys from various plant species suggest that polar-enriched methylesterified pectin is a unique feature of grass stomata. Xylanase pretreatment diminished pectin labelling at the polar ends, implying associations between pectin and xylan. Our multi-scale research uncovers a pectin–xylan–cellulose composite mediating polar fixation during maize stomatal movement, unveiling new targets for stomata engineering and crop breeding. The authors found esterified pectin localized at the stiff poles of maize stomata, modulating stomatal opening. These results reveal novel targets for stomatal engineering and breeding crops with higher water use efficiency.
气孔是光合作用和蒸腾过程中气体交换的关键,因此对植物生长和全球水循环至关重要。然而,细胞壁结构在草气孔功能中的作用机制尚不清楚。免疫标记和机械图谱显示,甲基化果胶局部分布在玉米气孔较硬的极端。果胶标记减少的表达抑制玉米的极性刚度降低,气孔孔径增大。有限元模型证实了这些发现,表明与非草类气孔相比,极性材料的大小和模量限制了玉米气孔的开放。来自不同植物物种的调查表明,富极性甲基化果胶是草气孔的独特特征。木聚糖酶预处理减少了果胶在极性末端的标记,表明果胶和木聚糖之间存在关联。我们的多尺度研究发现了一种介导玉米气孔运动极性固定的果胶-木聚糖-纤维素复合材料,为气孔工程和作物育种提供了新的靶点。
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引用次数: 0
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