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A biosynthetic gene cluster for three post-chorismate pathways in Arabidopsis 拟南芥中三个后脉络通路的生物合成基因簇
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-05 DOI: 10.1038/s41477-025-02185-5
Meng Peng, Jin Li, Xinyu Liu, Anran Liu, Barbara De Meester, Marlies Brouckaert, Geert Goeminne, Kris Morreel, Yanding Li, Vitaliy I. Timokhin, Ruben Vanholme, John Ralph, Wout Boerjan
Chorismate is a branch-point metabolite in the biosynthesis of aromatic amino acids, vitamins, antibiotics and various other aromatic products in bacteria, fungi and plants. Although 13 chorismate-utilizing enzymes have been identified in bacteria, only 6 have been described in plants, where an estimated 30% of all photosynthetically fixed carbon passes through chorismate. Here we describe a biosynthetic gene cluster (BGC) consisting of five core genes, including two reductases, two methyltransferases and one glucosyltransferase. Genetic and biochemical evidence shows that these five enzymes collectively give rise to three biosynthetic pathways, each originating from chorismate: two parallel pathways produce a class of non-aromatic, isomeric compounds abundant in the roots of Arabidopsis thaliana, whereas the third pathway produces methylated and glucosylated chorismate derivatives that subsequently react non-enzymatically with glutathione. Genome analysis revealed that variants of this BGC are present in some but not all species in the Brassicaceae family. Taken together, our study uncovered a BGC, containing three chorismate-utilizing enzymes, that controls three distinct post-chorismate pathways in A. thaliana. This work not only advances our understanding of carbon flow in this model plant but also highlights that the biochemical complexity encoded by plant BGCs is greater than previously appreciated. Peng et al. identify a class of non-aromatic, chorismate-derived compounds, abundant in the roots of Arabidopsis thaliana. These compounds are made by a biosynthetic gene cluster comprising five adjacent genes encoding biosynthetic enzymes.
choris酸是细菌、真菌和植物中芳香族氨基酸、维生素、抗生素和其他各种芳香族产物的生物合成中的分支代谢物。虽然已经在细菌中发现了13种利用choris酸的酶,但在植物中只有6种被描述,其中估计30%的光合作用固定碳通过choris酸。在这里,我们描述了一个由五个核心基因组成的生物合成基因簇(BGC),包括两个还原酶,两个甲基转移酶和一个葡萄糖基转移酶。遗传和生化证据表明,这五种酶共同产生了三种生物合成途径,每一种途径都源于choris酸:两个平行的途径产生一类非芳香的异构体化合物,在拟南芥的根中大量存在,而第三个途径产生甲基化和葡萄糖化的choris酸衍生物,随后与谷胱甘肽发生非酶反应。基因组分析表明,这种BGC的变异存在于芸苔科的一些物种中,但不是所有物种。综上所述,我们的研究发现了一个BGC,包含三个利用choris酸的酶,它控制着拟南芥中三个不同的后choris酸途径。这项工作不仅提高了我们对这种模式植物碳流的理解,而且强调了植物bgc编码的生化复杂性比以前所认识的要大。Peng等人鉴定出一类非芳香的、由choris酸衍生的化合物,大量存在于拟南芥(Arabidopsis thaliana)的根部。这些化合物是由一个生物合成基因簇组成的,该基因簇由五个相邻的编码生物合成酶的基因组成。
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引用次数: 0
Arabidopsis IONIC CURRENT FAMILY A proteins facilitate environmental calcium acquisition essential for stress tolerance 拟南芥离子电流家族A蛋白促进环境钙的获取,对抗逆性至关重要
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-05 DOI: 10.1038/s41477-025-02179-3
Zhijie Ren, Zebin Liu, Yasheng Xi, Yuxin Dong, Lei Gao, Qifei Gao, Congcong Hou, Sheng Luan, Legong Li, Wang Tian
Calcium (Ca2+) is an essential macronutrient for plant growth and defence, yet the molecular mechanisms regulating its uptake from soil remain largely undefined. Through bioinformatics and electrophysiological screening, we identified a group of plant-specific proteins, named the IONIC CURRENT FAMILY A (ICAs), which confer Ca2+-permeable non-selective cation channel (CNCC) activities in heterologous systems. In Arabidopsis thaliana, AtICA1, AtICA2, AtICA3 and AtICA4 are predominantly expressed in root cells, and their proteins localize to the plasma membrane. Under either limited or excessive external Ca2+ conditions, ica1/2/3/4 quadruple mutants display hypersensitivity or reduced sensitivity, respectively, as evidenced by altered root length. In addition, these mutants show increased sensitivity to various abiotic and biotic stresses under normal Ca2+ conditions. The ica mutants lack the previously characterized CNCC-mediated currents in roots that facilitate cellular Ca2+ uptake, resulting in lower Ca2+ levels compared with wild-type (WT) plants. Our findings suggest that AtICA1/2/3/4 may function as components of CNCCs, mediating Ca2+ uptake crucial for broad environmental stress tolerance under normal Ca2+ conditions. This study provides molecular insight into the mechanisms governing Ca2+ uptake in plant roots and expands our understanding of how plants maintain Ca2+ homeostasis under varying environmental conditions. This study identifies ICA proteins in Arabidopsis roots as key mediators of Ca2+ uptake through non-selective cation channels. High-order ica mutants show reduced Ca2+ levels and heightened stress sensitivity, revealing ICAs’ role in Ca2+ homeostasis.
钙(Ca2+)是植物生长和防御所必需的常量营养素,但调节其从土壤吸收的分子机制仍未明确。通过生物信息学和电生理筛选,我们鉴定了一组植物特异性蛋白,命名为离子电流家族a (ICAs),它们在异源系统中赋予Ca2+渗透性非选择性阳离子通道(CNCC)活性。在拟南芥中,AtICA1、AtICA2、AtICA3和AtICA4主要在根细胞中表达,其蛋白定位于质膜。在有限或过量的外部Ca2+条件下,ica1/2/3/4四重突变体分别表现出超敏或敏感性降低,这可以通过改变根长度来证明。此外,这些突变体在正常Ca2+条件下对各种非生物和生物胁迫表现出更高的敏感性。ica突变体缺乏先前表征的根中cncc介导的电流,促进细胞Ca2+摄取,导致与野生型(WT)植物相比,Ca2+水平较低。我们的研究结果表明,AtICA1/2/3/4可能是cncc的组成部分,在正常Ca2+条件下,介导Ca2+摄取对广泛的环境胁迫耐受至关重要。本研究为植物根系Ca2+摄取的调控机制提供了分子视角,并扩展了我们对植物如何在不同环境条件下维持Ca2+稳态的理解。本研究确定拟南芥根中的ICA蛋白是通过非选择性阳离子通道吸收Ca2+的关键介质。高阶ica突变体显示Ca2+水平降低和应激敏感性提高,揭示了ica在Ca2+稳态中的作用。
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引用次数: 0
Structural insights into the molecular mechanisms of OsFBN5-induced OsSPS3 catalysis osfbn5诱导OsSPS3催化的分子机制的结构见解
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-05 DOI: 10.1038/s41477-025-02184-6
Han Xiao, Xing-Xing Shi, Min Li, You-Wang Wang, Da-Wei Wang, Long-Can Mei, Hong-Yan Lin, Ping Zhu, Guang-Fu Yang
Solanesyl diphosphate synthase (SPS) is crucial for photosynthesis, as it supplies prenyl precursors for the biosynthesis of the photosynthetic electron carrier, plastoquinone-9 (PQ-9). Fibrillin 5 (FBN5) stimulates SPS catalytic activity through direct binding, which is essential for normal plant growth. However, the molecular mechanism of FBN5-mediated SPS catalytic regulation remains unclear. In Oryza sativa (rice), OsSPS3 is an important plastid-localized SPS isoform involved in PQ-9 formation. The Osfbn5 mutant plants display photodamage with exacerbated PQ-9 deficiency when exposed to high light. Here rice serves as a model organism to study SPS and FBN5. We report the crystal structures of the apo and inhibitor-bound forms of OsSPS3, revealing the alternating catalytic mechanism of the asymmetric OsSPS3 dimer. In addition, we report the cryo-electron microscopy structures of the apo and ligand-bound forms of the OsSPS3–FBN5 complex, showing that OsFBN5 binding triggers an open-to-closed conformational transition of a lid-like capping loop within the inactive monomer of OsSPS3, allowing both monomers of dimeric OsSPS3 to be catalytically active. A comparison of the enzymatic activities of the wild-type OsSPS3 homodimer and a recombinant OsSPS3 heterodimer containing one inactive mutant subunit revealed that OsFBN5 enhances the activity of OsSPS3 by inducing a synchronous catalytic mechanism. This work reveals the dynamic catalytic mechanism of OsSPS3 and provides a structural basis for understanding its function and the FBN5-mediated regulation of the PQ-9 biosynthesis pathway. This study provides structural insight into the dynamic catalytic mechanism of OsSPS3, a key enzyme in plastoquinone-9 biosynthesis. OsFBN5 enhances the activity of the OsSPS3 dimer by shifting its catalytic mechanism from alternating to synchronous.
Solanesyl diphosphate synthase (SPS)对光合作用至关重要,因为它为光合电子载体plasoquinone -9 (PQ-9)的生物合成提供戊烯基前体。纤维蛋白5 (Fibrillin 5, FBN5)通过直接结合刺激SPS的催化活性,这是植物正常生长所必需的。然而,fbn5介导的SPS催化调控的分子机制尚不清楚。在水稻中,OsSPS3是一个重要的质体定位SPS异构体,参与PQ-9的形成。Osfbn5突变体在强光照射下表现出光损伤,PQ-9缺乏症加剧。水稻是研究SPS和FBN5的模式生物。我们报道了OsSPS3载脂蛋白和抑制剂结合形式的晶体结构,揭示了不对称OsSPS3二聚体的交替催化机制。此外,我们报道了OsSPS3 - fbn5复合物载子和配体结合形式的低温电镜结构,表明OsFBN5结合触发OsSPS3非活性单体内的盖子状盖环的开放到封闭的构象转变,使二聚体OsSPS3的两个单体都具有催化活性。通过比较野生型OsSPS3同型二聚体和含有1个失活突变亚基的重组OsSPS3异源二聚体的酶活性发现,OsFBN5通过诱导同步催化机制增强OsSPS3的酶活性。这项工作揭示了OsSPS3的动态催化机制,为了解其功能和fbn5介导的PQ-9生物合成途径的调控提供了结构基础。本研究对塑醌-9生物合成的关键酶OsSPS3的动态催化机制进行了结构分析。OsFBN5通过将OsSPS3二聚体的催化机制从交替转化为同步来增强其活性。
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引用次数: 0
A novel cis-element enabled bacterial uptake by plant cells 一种新的顺式元件使植物细胞能够吸收细菌。
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-02 DOI: 10.1038/s41477-025-02161-z
Chloé Cathebras, Xiaoyun Gong, Rosa Elena Andrade, Ksenia Vondenhoff, Jean Keller, Pierre-Marc Delaux, Makoto Hayashi, Maximilian Griesmann, Martin Parniske
The root nodule symbiosis of plants with nitrogen-fixing bacteria is phylogenetically restricted to a single clade of flowering plants, which calls for as yet unidentified trait acquisitions and genetic changes in the last common ancestor. Here we discovered—within the promoter of the transcription factor gene Nodule Inception (NIN)—a cis-regulatory element (PACE), exclusively present in members of this clade. PACE was essential for restoring infection threads in nin mutants of the legume Lotus japonicus. PACE sequence variants from root nodule symbiosis-competent species appeared functionally equivalent. Evolutionary loss or mutation of PACE is associated with loss of this symbiosis. During the early stages of nodule development, PACE dictates gene expression in a spatially restricted domain containing cortical cells carrying infection threads. Consistent with its expression domain, PACE-driven NIN expression restored the formation of cortical infection threads, also when engineered into the NIN promoter of tomato. Our data pinpoint PACE as a key evolutionary invention that connected NIN to a pre-existing symbiosis signal transduction cascade that governs the intracellular accommodation of arbuscular mycorrhiza fungi and is conserved throughout land plants. This connection enabled bacterial uptake into plant cells via intracellular support structures such as infection threads, a unique and unifying feature of this symbiosis. A key step in the evolution of the nitrogen-fixing root nodule symbiosis, occurring 100 million years ago, subjected the control of Nodule Inception (NIN) gene expression to a protein complex that regulated transcription much earlier in the arbuscular mycorrhiza symbiosis.
植物与固氮细菌的根瘤共生在系统发育上仅限于开花植物的一个分支,这需要在最后一个共同祖先中尚未确定的性状获得和遗传变化。在这里,我们发现-在转录因子基因结节起始(NIN)的启动子中-一个顺式调控元件(PACE),仅存在于该分支的成员中。PACE是豆科植物荷花nin突变体侵染线恢复的关键。根瘤共生能力物种的PACE序列变异在功能上是相同的。PACE的进化丧失或突变与这种共生关系的丧失有关。在结节发育的早期阶段,PACE在包含携带感染线的皮质细胞的空间受限区域中决定基因表达。与其表达域一致的是,pace驱动的NIN表达恢复了番茄皮层感染线的形成,当基因工程进入NIN启动子时也是如此。我们的数据指出,PACE是一个关键的进化发明,将NIN与一个预先存在的共生信号转导级联联系起来,该级联控制着丛菌根真菌的细胞内调节,并在整个陆地植物中保守。这种连接使细菌通过细胞内支持结构(如感染线)进入植物细胞,这是这种共生关系的一个独特而统一的特征。
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引用次数: 0
Addendum: Cryo-EM structure of the RNA-rich plant mitochondrial ribosome 附录:富含rna的植物线粒体核糖体的低温电镜结构。
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-02 DOI: 10.1038/s41477-025-02209-0
Florent Waltz, Heddy Soufari, Anthony Bochler, Philippe Giegé, Yaser Hashem
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引用次数: 0
Carotenoid biosynthesis drives root plasticity through aerenchyma and iron plaque formation in rice 类胡萝卜素的生物合成通过通气组织和铁斑块的形成驱动水稻根系的可塑性。
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-02 DOI: 10.1038/s41477-025-02170-y
Jeevan Kumar Shrestha, Chih-Yu Lin, Jian You Wang, I-Chien Tang, Chun-Hao Hu, Munkhtsetseg Tsednee, Yasha Zhang, Muhammad Jamil, Lamis Berqdar, Ikram Blilou, Salim Al-Babili, Chang-Sheng Wang, Kuo-Chen Yeh
Rice roots develop aerenchyma, which transports oxygen from shoots to roots, facilitating adaptation to waterlogged conditions. This oxygen oxidizes ferrous ions into ferric compounds, forming iron plaque that mitigates iron toxicity. However, the molecular mechanisms linking aerenchyma and iron plaque formation remain poorly understood. Here we identified a rice mutant (AZ1302) defective in both aerenchyma and iron plaque formation, with the causal mutation mapped to the PHYTOENE SYNTHASE 2 (OsPSY2) gene. CRISPR–Cas9-induced psy2 mutants exhibited reduced levels of carotenoid-derived hormones, strigolactones and abscisic acid, in roots. In psy2 mutants, exogenous application of strigolactones rescued aerenchyma formation, while abscisic acid restored iron plaque deposition, providing evidence for distinct hormonal regulatory functions in the two processes. These findings revise the current understanding by dissociating the roles of aerenchyma and iron plaque formation, establishing a role for OsPSY2 in integrating hormonal signalling to drive root plasticity and offering new insights into plant adaptation under environmental stress. Shrestha et al. reveal that rice PHYTOENE SYNTHASE 2 (OsPSY2) coordinates the carotenoid-derived biosynthesis of abscisic acid and strigolactones, which independently govern iron plaque deposition and aerenchyma development, respectively.
水稻根系发育通气组织,将氧气从茎部输送到根系,促进对涝渍条件的适应。这种氧将铁离子氧化成铁化合物,形成铁斑块,减轻铁毒性。然而,连接通气组织和铁斑块形成的分子机制仍然知之甚少。在这里,我们发现了一个水稻突变体(AZ1302)在气孔和铁斑块形成方面都有缺陷,其致病突变定位于植物烯合成酶2 (OsPSY2)基因。crispr - cas9诱导的psy2突变体在根中表现出类胡萝卜素衍生激素、独角麦内酯和脱落酸水平的降低。在psy2突变体中,外源应用独角内酯挽救了通气组织的形成,而脱落酸恢复了铁斑块的沉积,这为两个过程中不同的激素调节功能提供了证据。这些发现通过分离通气组织和铁斑块形成的作用,修正了目前的认识,确立了OsPSY2在整合激素信号驱动根可塑性中的作用,并为植物在环境胁迫下的适应提供了新的见解。
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引用次数: 0
Engineering vascular potassium transport increases yield and drought resilience of cassava 工程钾维管输送可提高木薯产量和抗旱性
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-17 DOI: 10.1038/s41477-025-02159-7
W. Zierer, M. Fritzler, T. J. Chiu, R. B. Anjanappa, S.-H. Chang, R. Metzner, J. Quiros, C. E. Lamm, M. Thieme, R. Koller, G. Huber, O. Muller, U. Rascher, U. Sonnewald, H. E. Neuhaus, W. Gruissem, L. Bellin
Cassava (Manihot esculenta) is an important crop for food security in the tropics, particularly for smallholder farmers in sub-Saharan Africa, where yields are often severely limited by pathogen pressure, nutrient deficiency and water scarcity. We expressed a non-rectifying Arabidopsis thaliana potassium (K+) channel gene version, AKT2var, in the vascular tissue of cassava plants. The transgenic cassava plants had higher electron transport and CO2 assimilation rates, a higher bulk flow velocity and increased source–sink carbohydrate transport, as demonstrated by comparative 11C-positron emission tomography and tissue-specific metabolite profiling. Cassava storage root yield was significantly increased in greenhouse experiments and in a multi-year field trial conducted under subtropical conditions. AKT2var plants were also more tolerant of drought stress and had higher storage root yield. Targeted alteration of K+ transport is therefore a promising strategy to improve cassava productivity without additional fertilizer input and in climate-adverse growing conditions. Zierer et al. engineered cassava to express a modified potassium channel that enhances sugar flow, improving the yield and drought resilience. This strategy offers a route to increase cassava productivity in tropical regions.
木薯(Manihot esculenta)是热带地区粮食安全的重要作物,特别是对撒哈拉以南非洲的小农而言,那里的产量往往受到病原体压力、营养缺乏和缺水的严重限制。我们在木薯维管组织中表达了一个非校正的拟南芥钾(K+)通道基因AKT2var。通过比较11c正电子发射断层扫描和组织特异性代谢物谱分析表明,转基因木薯植株具有更高的电子传递率和二氧化碳同化率,更高的体流速度和更高的源库碳水化合物运输。在温室试验和在亚热带条件下进行的多年田间试验中,木薯贮藏根产量显著提高。AKT2var植株对干旱胁迫的耐受性更强,贮藏根产量更高。因此,在气候不利的生长条件下,有针对性地改变钾离子的运输是一种有希望的策略,可以在不增加肥料投入的情况下提高木薯的生产力。
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引用次数: 0
Engineering cassava for smart potassium use 用于智能钾利用的工程木薯
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-17 DOI: 10.1038/s41477-025-02167-7
Leena Tripathi
Engineering cassava with a modified potassium (K+) channel gene from Arabidopsis thaliana enhances K+ transport, photosynthesis and storage root yield, offering a sustainable strategy to boost productivity and resilience in nutrient-poor and drought-prone environments.
拟南芥钾离子通道基因改造木薯可提高钾离子运输、光合作用和储存根产量,为在营养贫乏和易干旱环境中提高生产力和抵御能力提供了可持续策略。
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引用次数: 0
… of the Year 年度…
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-17 DOI: 10.1038/s41477-025-02203-6
December is a time when ‘… of the Year’ pieces appear in all kinds of publications. For this year only, Nature Plants is joining the trend.
12月是“年度……”出现在各种出版物上的时候。今年,自然植物也加入了这一潮流。
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引用次数: 0
Author Correction: N6-methyladenosine-mediated feedback regulation of abscisic acid perception via phase-separated ECT8 condensates in Arabidopsis 作者更正:n6 -甲基腺苷介导的通过相分离的ECT8凝聚体对拟南芥脱落酸感知的反馈调节。
IF 13.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-16 DOI: 10.1038/s41477-025-02211-6
Xiaowei Wu, Tingting Su, Songyao Zhang, Yu Zhang, Chui Eng Wong, Jinqi Ma, Yanlin Shao, Changmei Hua, Lisha Shen, Hao Yu
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引用次数: 0
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