Pub Date : 2026-01-23DOI: 10.1016/j.molp.2026.01.007
Leilei Yang, Mingming Yang, Bobo Zhao, Xiaoxue Zhang, Lei Wang, Mengsi Zhang, Bo Wang, Qing Wang, Jiabing Ma, Xiaofei Du, Yuli Luo, Shuaiwu Wang, Yao Wang, Xihui Shen, Lili Huang
{"title":"Pseudomonas syringae histidine kinase BvgS acts as the sensory receptor of plant-derived putrescine to activate the type III secretion system and enhance bacterial virulence","authors":"Leilei Yang, Mingming Yang, Bobo Zhao, Xiaoxue Zhang, Lei Wang, Mengsi Zhang, Bo Wang, Qing Wang, Jiabing Ma, Xiaofei Du, Yuli Luo, Shuaiwu Wang, Yao Wang, Xihui Shen, Lili Huang","doi":"10.1016/j.molp.2026.01.007","DOIUrl":"https://doi.org/10.1016/j.molp.2026.01.007","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":"4 1","pages":""},"PeriodicalIF":27.5,"publicationDate":"2026-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146033192","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-21DOI: 10.1016/j.molp.2026.01.008
Zhongmin Zou, Yuhan Zhu, Chao Su, Yangrong Cao
{"title":"Evolution and variation of gene modules associated with symbiotic nitrogen fixation in the nitrogen-fixing clade","authors":"Zhongmin Zou, Yuhan Zhu, Chao Su, Yangrong Cao","doi":"10.1016/j.molp.2026.01.008","DOIUrl":"https://doi.org/10.1016/j.molp.2026.01.008","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":"37 1","pages":""},"PeriodicalIF":27.5,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146014805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-21DOI: 10.1016/j.molp.2026.01.006
Ahamed Khan, Sara Farrona
{"title":"PLETHORA Transcription Factors: Stepping into Epigenetic Bivalent Control of the Rice Root Meristem.","authors":"Ahamed Khan, Sara Farrona","doi":"10.1016/j.molp.2026.01.006","DOIUrl":"https://doi.org/10.1016/j.molp.2026.01.006","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":24.1,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146030423","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-19DOI: 10.1016/j.molp.2026.01.004
Vikram Jha, Patricia Zecua-Ramirez, Martin Stegmann
Immuno-modulatory plant endogenous peptides (often referred to as phytocytokines) are increasingly recognized as important regulators of plant immunity. Research in recent years revealed several novel phytocytokine pathways in Arabidopsis and other plant species (Liu et al., 2022; Rzemieniewski et al., 2024; Dong et al., 2025; Yu et al., 2025). Phytocytokines are perceived by plasma membrane receptor kinases (RKs), mostly with extracellular leucine-rich repeat domains (LRRs). They are often limited to individual plant families, hampering applicability upon discoveries in model species (Rhodes et al., 2021; Liu et al., 2022). Two recent papers in Molecular plant now provide a leap forward, identifying phytocytokine modules in the monocot crops wheat and rice, offering the potential for translational approaches (Sun et al., 2025; Wang et al., 2025).
免疫调节植物内源性肽(通常称为植物细胞因子)越来越被认为是植物免疫的重要调节因子。近年来的研究揭示了拟南芥等植物中几种新的植物细胞因子通路(Liu et al., 2022; Rzemieniewski et al., 2024; Dong et al., 2025; Yu et al., 2025)。植物细胞因子通过质膜受体激酶(RKs)感知,主要具有胞外富含亮氨酸重复结构域(lrr)。它们通常仅限于单个植物科,阻碍了在模式物种中发现的适用性(Rhodes et al., 2021; Liu et al., 2022)。最近发表在Molecular plant上的两篇论文提供了一个飞跃,鉴定了单株作物小麦和水稻中的植物细胞因子模块,为转化方法提供了潜力(Sun et al., 2025; Wang et al., 2025)。
{"title":"Phytocytokines as regulators of disease resistance in monocot crops.","authors":"Vikram Jha, Patricia Zecua-Ramirez, Martin Stegmann","doi":"10.1016/j.molp.2026.01.004","DOIUrl":"https://doi.org/10.1016/j.molp.2026.01.004","url":null,"abstract":"<p><p>Immuno-modulatory plant endogenous peptides (often referred to as phytocytokines) are increasingly recognized as important regulators of plant immunity. Research in recent years revealed several novel phytocytokine pathways in Arabidopsis and other plant species (Liu et al., 2022; Rzemieniewski et al., 2024; Dong et al., 2025; Yu et al., 2025). Phytocytokines are perceived by plasma membrane receptor kinases (RKs), mostly with extracellular leucine-rich repeat domains (LRRs). They are often limited to individual plant families, hampering applicability upon discoveries in model species (Rhodes et al., 2021; Liu et al., 2022). Two recent papers in Molecular plant now provide a leap forward, identifying phytocytokine modules in the monocot crops wheat and rice, offering the potential for translational approaches (Sun et al., 2025; Wang et al., 2025).</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":24.1,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-12DOI: 10.1016/j.molp.2026.01.003
Diogo P. Godinho, João G. Mariz, Paula Duque
{"title":"Hidden layers of defense: Alternative splicing in plant immunity","authors":"Diogo P. Godinho, João G. Mariz, Paula Duque","doi":"10.1016/j.molp.2026.01.003","DOIUrl":"https://doi.org/10.1016/j.molp.2026.01.003","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":"11 1","pages":""},"PeriodicalIF":27.5,"publicationDate":"2026-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145956652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-05Epub Date: 2025-10-24DOI: 10.1016/j.molp.2025.10.004
Yinting Wang, Zixuan Li, Bi Wu, Xueqiang Wang, Wenyan Yang, Danjing Lou, Jinyue Ge, Ziran Liu, Wenlong Guo, Neng Zhao, Jun Yang, Weiya Fan, Kai Wang, Fei Li, Weihua Qiao, Hongbo Pang, Leina Zhou, Qingwen Yang, Chenwu Xu, Dingyang Yuan, Yang Xu, Qian Qian, Xiaoming Zheng
Hybrid rice has made significant contributions to global food security. However, the efficient utilization of landraces to further enhance heterosis remains a key challenge in rice breeding. In this study, we collected a set of 1,392 landraces and 696 hybrid rice parental lines. A total of 770 hybrid combinations were constructed by crossing 517 accessions selected from 2088 rice accessions, and seven key yield-related traits were collected. Nearly 500,000 potential hybrid combinations were predicted, and comprehensive analysis revealed that landraces from South Asia played a significant role in improving multiple traits. Further investigation revealed substantial variation in the landraces' contribution to the optimal hybrid combinations for various characteristics, with landraces particularly contributing to improvements in grain width. We identified 171 quantitative trait loci (QTLs) for seven traits using three association analysis methods. Of these QTLs, 77 known genes were identified within 66 QTLs and 105 novel QTLs without any known genes near them. CRISPR/Cas9-mediated gene editing revealed that OsGRW5.1 plays a crucial role in regulating grain width and grain weight in rice. Furthermore, a strong correlation was observed between the accumulation of advantageous haplotypes and enhanced phenotypic performance. More than 45% of the advantageous haplotypes derived from landraces are likely to play a significant role in future hybrid rice improvement. A predictive platform was developed, which can output all seven phenotypes of potential hybrid combinations with a given genotype of both parents. Collectively, our study provides valuable data and practical insights for enhancing heterosis through the efficient utilization of landraces.
{"title":"Dissection of the genetic basis of 1392 rice landraces and 770 hybrid combinations reveals great potential of rice landraces in hybrid rice improvement.","authors":"Yinting Wang, Zixuan Li, Bi Wu, Xueqiang Wang, Wenyan Yang, Danjing Lou, Jinyue Ge, Ziran Liu, Wenlong Guo, Neng Zhao, Jun Yang, Weiya Fan, Kai Wang, Fei Li, Weihua Qiao, Hongbo Pang, Leina Zhou, Qingwen Yang, Chenwu Xu, Dingyang Yuan, Yang Xu, Qian Qian, Xiaoming Zheng","doi":"10.1016/j.molp.2025.10.004","DOIUrl":"10.1016/j.molp.2025.10.004","url":null,"abstract":"<p><p>Hybrid rice has made significant contributions to global food security. However, the efficient utilization of landraces to further enhance heterosis remains a key challenge in rice breeding. In this study, we collected a set of 1,392 landraces and 696 hybrid rice parental lines. A total of 770 hybrid combinations were constructed by crossing 517 accessions selected from 2088 rice accessions, and seven key yield-related traits were collected. Nearly 500,000 potential hybrid combinations were predicted, and comprehensive analysis revealed that landraces from South Asia played a significant role in improving multiple traits. Further investigation revealed substantial variation in the landraces' contribution to the optimal hybrid combinations for various characteristics, with landraces particularly contributing to improvements in grain width. We identified 171 quantitative trait loci (QTLs) for seven traits using three association analysis methods. Of these QTLs, 77 known genes were identified within 66 QTLs and 105 novel QTLs without any known genes near them. CRISPR/Cas9-mediated gene editing revealed that OsGRW5.1 plays a crucial role in regulating grain width and grain weight in rice. Furthermore, a strong correlation was observed between the accumulation of advantageous haplotypes and enhanced phenotypic performance. More than 45% of the advantageous haplotypes derived from landraces are likely to play a significant role in future hybrid rice improvement. A predictive platform was developed, which can output all seven phenotypes of potential hybrid combinations with a given genotype of both parents. Collectively, our study provides valuable data and practical insights for enhancing heterosis through the efficient utilization of landraces.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"66-80"},"PeriodicalIF":24.1,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145368446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Beclin 1/ATG6 plays a critical role in the biogenesis of autophagosomes and various cellular processes, but how Beclin 1-dependent autophagy is activated in plants remains elusive. In this study, we found that the cysteine protease metacaspase 1 (MC1) functions as a new positive regulator of autophagy and cleaves Beclin 1 behind residues R97 and R99 in tobacco (Nicotiana benthamiana). Genetic analysis further demonstrated that the MC1-Beclin 1 cleavage module is both necessary and sufficient for the activation of plant autophagy. Mechanistically, this cleavage releases the N-terminal fragment of Beclin 1 (aa 1-97), which exhibits intrinsic autophagy-inducing activity and is dependent on the phosphatidylinositol 3-kinase complex. Moreover, the activated autophagy boosts broad-spectrum antiviral responses, while the barley stripe mosaic virus-encoded γb protein targets MC1 and suppresses MC1-mediated Beclin 1 cleavage, thereby optimizing viral infection. The cleavage of Beclin 1 is thought to abolish its autophagic function in mammals; however, our findings unveil a distinctive plant autophagy mechanism whereby Beclin 1 activation necessitates MC1-mediated cleavage to drive antiviral autophagy.
{"title":"Cleavage of Beclin 1 by metacaspase 1 activates antiviral autophagy in plants.","authors":"Rujian Hu, Qinglin Pi, Meng Yang, Wen Song, Zhihao Jiang, Chenchen Zhong, Huanxi Han, Cheng-Gui Han, Yongliang Zhang, Dawei Li","doi":"10.1016/j.molp.2025.10.015","DOIUrl":"10.1016/j.molp.2025.10.015","url":null,"abstract":"<p><p>Beclin 1/ATG6 plays a critical role in the biogenesis of autophagosomes and various cellular processes, but how Beclin 1-dependent autophagy is activated in plants remains elusive. In this study, we found that the cysteine protease metacaspase 1 (MC1) functions as a new positive regulator of autophagy and cleaves Beclin 1 behind residues R97 and R99 in tobacco (Nicotiana benthamiana). Genetic analysis further demonstrated that the MC1-Beclin 1 cleavage module is both necessary and sufficient for the activation of plant autophagy. Mechanistically, this cleavage releases the N-terminal fragment of Beclin 1 (aa 1-97), which exhibits intrinsic autophagy-inducing activity and is dependent on the phosphatidylinositol 3-kinase complex. Moreover, the activated autophagy boosts broad-spectrum antiviral responses, while the barley stripe mosaic virus-encoded γb protein targets MC1 and suppresses MC1-mediated Beclin 1 cleavage, thereby optimizing viral infection. The cleavage of Beclin 1 is thought to abolish its autophagic function in mammals; however, our findings unveil a distinctive plant autophagy mechanism whereby Beclin 1 activation necessitates MC1-mediated cleavage to drive antiviral autophagy.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"48-65"},"PeriodicalIF":24.1,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145355289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-05Epub Date: 2025-10-24DOI: 10.1016/j.molp.2025.10.014
Ye Guo, Yunjiang Cheng, Pengwei Wang
{"title":"Autophagy: How to understand its complex roles in fruit ripening.","authors":"Ye Guo, Yunjiang Cheng, Pengwei Wang","doi":"10.1016/j.molp.2025.10.014","DOIUrl":"10.1016/j.molp.2025.10.014","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"6-8"},"PeriodicalIF":24.1,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145355319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}