首页 > 最新文献

Molecular Plant最新文献

英文 中文
How ignoring market-informed crop varietal development fuels food price volatility. 忽视以市场为导向的作物品种开发是如何加剧粮食价格波动的?
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-06 Epub Date: 2024-12-12 DOI: 10.1016/j.molp.2024.12.008
Ganesh Alagarasan

In conclusion, aligning crop development with market demands is not just a strategic move for economic stability; it is a requisite for building resilient, profitable, and sustainable agricultural systems. By doing so, the sector can provide stability for farmers and affordability for consumers and contribute to the socio-economic resilience of communities worldwide.

农业必须确保农民的盈利能力和消费者的负担能力。在作物品种开发中忽视市场信号的后果与它们被忽视一样普遍。认识到所需的微妙平衡,审视当前的农业实践如何在追求高产量的同时往往忽视了同样重要的市场需求和环境可持续性,就变得至关重要。
{"title":"How ignoring market-informed crop varietal development fuels food price volatility.","authors":"Ganesh Alagarasan","doi":"10.1016/j.molp.2024.12.008","DOIUrl":"10.1016/j.molp.2024.12.008","url":null,"abstract":"<p><p>In conclusion, aligning crop development with market demands is not just a strategic move for economic stability; it is a requisite for building resilient, profitable, and sustainable agricultural systems. By doing so, the sector can provide stability for farmers and affordability for consumers and contribute to the socio-economic resilience of communities worldwide.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"1-4"},"PeriodicalIF":17.1,"publicationDate":"2025-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142823917","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The miR172a-SNB module orchestrates both induced and adult-plant resistance to multiple diseases via MYB30-mediated lignin accumulation in rice. miR172a-SNB模块通过myb30介导的木质素积累协调水稻对多种疾病的诱导抗性和成体抗性。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-06 Epub Date: 2024-11-30 DOI: 10.1016/j.molp.2024.11.015
He Wang, Zhe-Xu Wang, Hong-Yuan Tian, Yu-Long Zeng, Hao Xue, Wan-Ting Mao, Lu-Yue Zhang, Jun-Ni Chen, Xiang Lu, Yong Zhu, Guo-Bang Li, Zhi-Xue Zhao, Ji-Wei Zhang, Yan-Yan Huang, Jing Fan, Pei-Zhou Xu, Xiao-Qiong Chen, Wei-Tao Li, Xian-Jun Wu, Wen-Ming Wang, Yan Li

Plants mount induced resistance and adult-plant resistance against different pathogens throughout the whole growth period. Rice production faces threats from multiple major diseases, including rice blast, sheath blight, and bacterial leaf blight. Here, we report that the miR172a-SNB-MYB30 module regulates both induced and adult-plant resistance to these three major diseases via lignification in rice. Mechanistically, pathogen infections induce the expression of miR172a, which downregulates the transcription factor SNB to release its suppression of MYB30, leading to an increase in lignin biosynthesis and disease resistance throughout the whole growth period. Moreover, expression levels of miR172a and MYB30 gradually increase and are consistently correlated with lignin contents and disease resistance during rice development, reaching a peak at full maturity, whereas SNB RNA levels are negatively correlated with lignin contents and disease resistance, indicating the involvement of the miR172a-SNB-MYB30 module in adult-plant resistance. The functional domain of SNB protein and its binding sites in the MYB30 promoter are highly conserved among more than 4000 rice accessions, while abnormal expression of miR172a, SNB, or MYB30 compromises yield traits, suggesting artificial selection of the miR172a-SNB-MYB30 module during rice domestication. Taken together, these results reveal a novel role for a conserved miRNA-regulated module that contributes significantly to induced and adult-plant resistance against multiple pathogens by increasing lignin accumulation, deepening our understanding of broad-spectrum resistance and adult-plant resistance.

植物在整个生长过程中对不同的病原菌产生诱导抗性和成体抗性。水稻生产面临稻瘟病、纹枯病和细菌性叶枯病等多种主要病害的威胁。在这里,我们报道了一个microRNA模块miR172a-SNB-MYB30,通过木质素化调节水稻对这三种主要疾病的诱导抗性和成株抗性。机制上,病原菌诱导miR172a表达,miR172a下调转录因子SNB,释放其对MYB30的抑制,导致整个生长时期木质素生物合成增加,抗病能力增强。此外,miR172a和MYB30的表达水平在水稻发育过程中逐渐升高,并与木质素含量和抗病性保持一致,在成熟期达到峰值,而SNB RNA的表达水平与木质素含量和抗病性呈负相关,表明miR172a-SNB-MYB30模块参与了植物成虫抗性。在4000多份水稻材料中,SNB蛋白的功能域及其MYB30启动子的结合位点存在高度保守性;此外,miR172a、SNB或MYB30的异常表达会影响产量性状,这表明在水稻驯化过程中,miR172a-SNB-MYB30模块被人为选择。我们的研究结果揭示了一个保守的mirna调控模块的新作用,该模块通过木质素积累显著地促进了对多种病原体的诱导和成体抗性,促进了我们对广谱抗性和成体抗性的理解。
{"title":"The miR172a-SNB module orchestrates both induced and adult-plant resistance to multiple diseases via MYB30-mediated lignin accumulation in rice.","authors":"He Wang, Zhe-Xu Wang, Hong-Yuan Tian, Yu-Long Zeng, Hao Xue, Wan-Ting Mao, Lu-Yue Zhang, Jun-Ni Chen, Xiang Lu, Yong Zhu, Guo-Bang Li, Zhi-Xue Zhao, Ji-Wei Zhang, Yan-Yan Huang, Jing Fan, Pei-Zhou Xu, Xiao-Qiong Chen, Wei-Tao Li, Xian-Jun Wu, Wen-Ming Wang, Yan Li","doi":"10.1016/j.molp.2024.11.015","DOIUrl":"10.1016/j.molp.2024.11.015","url":null,"abstract":"<p><p>Plants mount induced resistance and adult-plant resistance against different pathogens throughout the whole growth period. Rice production faces threats from multiple major diseases, including rice blast, sheath blight, and bacterial leaf blight. Here, we report that the miR172a-SNB-MYB30 module regulates both induced and adult-plant resistance to these three major diseases via lignification in rice. Mechanistically, pathogen infections induce the expression of miR172a, which downregulates the transcription factor SNB to release its suppression of MYB30, leading to an increase in lignin biosynthesis and disease resistance throughout the whole growth period. Moreover, expression levels of miR172a and MYB30 gradually increase and are consistently correlated with lignin contents and disease resistance during rice development, reaching a peak at full maturity, whereas SNB RNA levels are negatively correlated with lignin contents and disease resistance, indicating the involvement of the miR172a-SNB-MYB30 module in adult-plant resistance. The functional domain of SNB protein and its binding sites in the MYB30 promoter are highly conserved among more than 4000 rice accessions, while abnormal expression of miR172a, SNB, or MYB30 compromises yield traits, suggesting artificial selection of the miR172a-SNB-MYB30 module during rice domestication. Taken together, these results reveal a novel role for a conserved miRNA-regulated module that contributes significantly to induced and adult-plant resistance against multiple pathogens by increasing lignin accumulation, deepening our understanding of broad-spectrum resistance and adult-plant resistance.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"59-75"},"PeriodicalIF":17.1,"publicationDate":"2025-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142770587","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The First International Symposium of the World Wild Rice Wiring: Conservation and Utilization of Global Wild Rice Germplasm Resources through International Cooperation. 首届世界野生稻配线国际研讨会:通过国际合作保护和利用全球野生稻种质资源。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-03 DOI: 10.1016/j.molp.2025.01.002
Disna Ratnasekera, Jiayu Fan, Robert J Henry, Beng-Kah Song, Peterson Wambugu, Tonapha Pusadee, Ohn Mar Aung, Koukham Vilayheuang, Xiaoming Zheng, Qian Qian

As drastic climatic changes significantly impact global agriculture, the importance of conserving and utilizing wild germplasm has gained prominance. In this context, the conservation and sustainable utilization of wild rice germplasm resources have become a high priority. Although efforts to conserve and sustainably utilize wild rice germplasm are underway globally, they are fragmented and require international cooperation to advance climate-resilient rice breeding and ensure future food securiety.

随着气候的剧烈变化对全球农业的重大影响,野生种质资源的保护和利用的重要性日益凸显。在此背景下,野生水稻种质资源的保护和可持续利用已成为当务之急。尽管全球正在努力保护和可持续利用野生水稻种质资源,但它们是分散的,需要国际合作来推进气候适应型水稻育种,确保未来的粮食安全。
{"title":"The First International Symposium of the World Wild Rice Wiring: Conservation and Utilization of Global Wild Rice Germplasm Resources through International Cooperation.","authors":"Disna Ratnasekera, Jiayu Fan, Robert J Henry, Beng-Kah Song, Peterson Wambugu, Tonapha Pusadee, Ohn Mar Aung, Koukham Vilayheuang, Xiaoming Zheng, Qian Qian","doi":"10.1016/j.molp.2025.01.002","DOIUrl":"https://doi.org/10.1016/j.molp.2025.01.002","url":null,"abstract":"<p><p>As drastic climatic changes significantly impact global agriculture, the importance of conserving and utilizing wild germplasm has gained prominance. In this context, the conservation and sustainable utilization of wild rice germplasm resources have become a high priority. Although efforts to conserve and sustainably utilize wild rice germplasm are underway globally, they are fragmented and require international cooperation to advance climate-resilient rice breeding and ensure future food securiety.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2025-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142927658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
International Research Initiative on Genomics-guided Sugarcane Breeding. 国际基因组学指导甘蔗育种研究计划。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-02 DOI: 10.1016/j.molp.2025.01.003
Xingtan Zhang, Jungang Wang, Noor-Ul Áin, Youxiong Que, Jisen Zhang, Javeria Abid, Peifang Zhao, Yuebin Zhang, Jishan Lin, Li-Yu Chen, Yixue Bao, Robert Herry, Sithichoke Tangphatsornruang, Qinnan Wang, Dongliang Huang, Jian Ye, Muqing Zhang, Ming Luo, Mike Butterfield, Ren Wang, Ray Ming
{"title":"International Research Initiative on Genomics-guided Sugarcane Breeding.","authors":"Xingtan Zhang, Jungang Wang, Noor-Ul Áin, Youxiong Que, Jisen Zhang, Javeria Abid, Peifang Zhao, Yuebin Zhang, Jishan Lin, Li-Yu Chen, Yixue Bao, Robert Herry, Sithichoke Tangphatsornruang, Qinnan Wang, Dongliang Huang, Jian Ye, Muqing Zhang, Ming Luo, Mike Butterfield, Ren Wang, Ray Ming","doi":"10.1016/j.molp.2025.01.003","DOIUrl":"https://doi.org/10.1016/j.molp.2025.01.003","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142927653","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A small RNA effector conserved in herbivore insects suppresses host plant defense by cross-kingdom gene silencing. 在食草昆虫中保守的小RNA效应物通过跨界基因沉默抑制寄主植物防御。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-02 DOI: 10.1016/j.molp.2025.01.001
Wen-Hao Han, Shun-Xia Ji, Feng-Bin Zhang, Hong-Da Song, Jun-Xia Wang, Xiao-Ping Fan, Rui Xie, Shu-Sheng Liu, Xiao-Wei Wang

Herbivore insects deploy salivary effectors to manipulate the defense of their host plants. However, it remains unclear whether small RNAs from insects function as effectors in regulating plant-insect interactions. Here, we report that a microRNA (miR29-b) found in the saliva of phloem-feeding whitefly (Bemisa tabaci) can transfer into the host plant phloem during feeding and fine-tune the defense response of tobacco (Nicotiana tabacum). The salivary gland-enriched BtmiR29-b was produced by BtDicer 1 and released into tobacco via salivary exosomes. Once inside the plant, BtmiR29-b hijacks tobacco Argonaute 1 to silence the defense gene Bcl-2-associated athanogene 4 (NtBAG4). In tobacco, NtBAG4 acts as the positive regulator of phytohormones (salicylic acid) SA and (jasmonic acid) JA, enhancing plant defense against whitefly attacks. Interestingly, we also found that miR29-b acts as a salivary effector in another Hemipteran insect, the aphid Myzus persicae, where it also inhibits tobacco resistance by degrading NtBAG4. Moreover, miR29-b is highly conserved not only in Hemiptera, but also across other insect orders such as Coleoptera, Hymenoptera, Orthoptera, and Blattaria. Computational analysis suggests that miR29-b may target the evolutionarily conserved BAG4 gene in other plant species as well. We further provide evidence on BtmiR29-b mediated BAG4 cleavage and defense suppress in tomato (Solanum lycopersicum). Taken together, our work demonstrated an insect-conserved miR29-b effector fine-tuning plant SA/JA-mediated defense by cross-kingdom silencing of the host BAG4 gene. These findings provide new insight into the defense and counter-defense mechanisms between herbivores and their host plants.

食草昆虫利用唾液效应物来操纵寄主植物的防御。然而,来自昆虫的小rna是否在调节植物-昆虫相互作用中作为效应物仍不清楚。本研究发现,在以韧皮部为食的白蝇(Bemisa tabaci)唾液中发现的一种microRNA (miR29-b)可以在取食过程中转移到寄主植物的韧皮部,并调节烟草(Nicotiana tabacum)的防御反应。富含唾液腺的BtmiR29-b由BtDicer 1产生,并通过唾液外泌体释放到烟草中。一旦进入植物内部,BtmiR29-b劫持烟草Argonaute 1以沉默防御基因bcl -2相关的atthanogene 4 (NtBAG4)。在烟草中,NtBAG4作为植物激素(水杨酸)SA和(茉莉酸)JA的正调节因子,增强植物对粉虱攻击的防御能力。有趣的是,我们还发现miR29-b在另一种半翅目昆虫——桃蚜(Myzus persicae)中作为唾液效应物,通过降解NtBAG4抑制烟草抗性。此外,miR29-b不仅在半翅目昆虫中具有高度保守性,而且在鞘翅目、膜翅目、直翅目和鞘翅目昆虫中也具有高度保守性。计算分析表明,miR29-b也可能在其他植物物种中靶向进化上保守的BAG4基因。我们进一步提供了BtmiR29-b介导番茄(Solanum lycopersicum)中BAG4裂解和防御抑制的证据。综上所述,我们的工作证明了昆虫保守的miR29-b效应物通过跨界沉默宿主BAG4基因来微调植物SA/ ja介导的防御。这些发现为草食动物和寄主植物之间的防御和反防御机制提供了新的见解。
{"title":"A small RNA effector conserved in herbivore insects suppresses host plant defense by cross-kingdom gene silencing.","authors":"Wen-Hao Han, Shun-Xia Ji, Feng-Bin Zhang, Hong-Da Song, Jun-Xia Wang, Xiao-Ping Fan, Rui Xie, Shu-Sheng Liu, Xiao-Wei Wang","doi":"10.1016/j.molp.2025.01.001","DOIUrl":"https://doi.org/10.1016/j.molp.2025.01.001","url":null,"abstract":"<p><p>Herbivore insects deploy salivary effectors to manipulate the defense of their host plants. However, it remains unclear whether small RNAs from insects function as effectors in regulating plant-insect interactions. Here, we report that a microRNA (miR29-b) found in the saliva of phloem-feeding whitefly (Bemisa tabaci) can transfer into the host plant phloem during feeding and fine-tune the defense response of tobacco (Nicotiana tabacum). The salivary gland-enriched BtmiR29-b was produced by BtDicer 1 and released into tobacco via salivary exosomes. Once inside the plant, BtmiR29-b hijacks tobacco Argonaute 1 to silence the defense gene Bcl-2-associated athanogene 4 (NtBAG4). In tobacco, NtBAG4 acts as the positive regulator of phytohormones (salicylic acid) SA and (jasmonic acid) JA, enhancing plant defense against whitefly attacks. Interestingly, we also found that miR29-b acts as a salivary effector in another Hemipteran insect, the aphid Myzus persicae, where it also inhibits tobacco resistance by degrading NtBAG4. Moreover, miR29-b is highly conserved not only in Hemiptera, but also across other insect orders such as Coleoptera, Hymenoptera, Orthoptera, and Blattaria. Computational analysis suggests that miR29-b may target the evolutionarily conserved BAG4 gene in other plant species as well. We further provide evidence on BtmiR29-b mediated BAG4 cleavage and defense suppress in tomato (Solanum lycopersicum). Taken together, our work demonstrated an insect-conserved miR29-b effector fine-tuning plant SA/JA-mediated defense by cross-kingdom silencing of the host BAG4 gene. These findings provide new insight into the defense and counter-defense mechanisms between herbivores and their host plants.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142927648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Medicago2035: Genomes, Functional Genomics and Molecular Breeding. Medicago2035:基因组、功能基因组学和分子育种。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-30 DOI: 10.1016/j.molp.2024.12.015
Qinyi Ye, Chuanen Zhou, Hao Lin, Dong Luo, Divya Jain, Maofeng Chai, Zhichao Lu, Zhipeng Liu, Sonali Roy, Jiangli Dong, Zeng-Yu Wang, Tao Wang

Medicago, a member of the Leguminosae or Fabaceae family, encompasses the most significant forage crops globally, notably alfalfa (Medicago sativa L.). Its close diploid relative, Medicago truncatula, serves as an exemplary model plant for investigating leguminous growth and development, as well as its symbiosis with rhizobia. Over the past decade, advancements in Medicago genomics have significantly progressed our understanding of the molecular regulatory mechanisms underlying various traits. In this review, we comprehensively summarize the progress made in the fields of genomics research, growth and development (comprising compound leaf development, shoot branching, flowering time regulation, inflorescence development, floral organ development, and seed dormancy), resistance to abiotic and biotic stresses, symbiotic nitrogen fixation with rhizobia, as well as molecular breeding. Furthermore, we propose avenues for future research endeavors in Medicago molecular biology for the upcoming decade, highlighting those areas that have yet to be untapped or remain ambiguous.

苜蓿,豆科或豆科的一员,包括全球最重要的饲料作物,特别是苜蓿(Medicago sativa L.)。它的近二倍体亲戚,苜蓿,是研究豆科植物生长发育及其与根瘤菌共生的典范植物。在过去的十年中,Medicago基因组学的进步极大地促进了我们对各种性状的分子调控机制的理解。本文从基因组学研究、生长发育(包括复叶发育、茎枝分枝、开花时间调控、花序发育、花器官发育和种子休眠)、抗非生物和生物胁迫、与根瘤菌共生固氮以及分子育种等方面综述了近年来的研究进展。此外,我们提出了未来十年在Medicago分子生物学方面的研究方向,强调了那些尚未开发或仍然模棱两可的领域。
{"title":"Medicago2035: Genomes, Functional Genomics and Molecular Breeding.","authors":"Qinyi Ye, Chuanen Zhou, Hao Lin, Dong Luo, Divya Jain, Maofeng Chai, Zhichao Lu, Zhipeng Liu, Sonali Roy, Jiangli Dong, Zeng-Yu Wang, Tao Wang","doi":"10.1016/j.molp.2024.12.015","DOIUrl":"https://doi.org/10.1016/j.molp.2024.12.015","url":null,"abstract":"<p><p>Medicago, a member of the Leguminosae or Fabaceae family, encompasses the most significant forage crops globally, notably alfalfa (Medicago sativa L.). Its close diploid relative, Medicago truncatula, serves as an exemplary model plant for investigating leguminous growth and development, as well as its symbiosis with rhizobia. Over the past decade, advancements in Medicago genomics have significantly progressed our understanding of the molecular regulatory mechanisms underlying various traits. In this review, we comprehensively summarize the progress made in the fields of genomics research, growth and development (comprising compound leaf development, shoot branching, flowering time regulation, inflorescence development, floral organ development, and seed dormancy), resistance to abiotic and biotic stresses, symbiotic nitrogen fixation with rhizobia, as well as molecular breeding. Furthermore, we propose avenues for future research endeavors in Medicago molecular biology for the upcoming decade, highlighting those areas that have yet to be untapped or remain ambiguous.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142915301","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unlocking Sweetness: Gene Editing of SlCDPKs to Improve Tomato Flavor. 解锁甜味:SlCDPKs基因编辑改善番茄风味。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-30 DOI: 10.1016/j.molp.2024.12.016
Meng Li, Chao Sun, Shuang Wu
{"title":"Unlocking Sweetness: Gene Editing of SlCDPKs to Improve Tomato Flavor.","authors":"Meng Li, Chao Sun, Shuang Wu","doi":"10.1016/j.molp.2024.12.016","DOIUrl":"https://doi.org/10.1016/j.molp.2024.12.016","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142915302","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Reevaluating Statistical Methods in Metabolomic Studies: A Case for Spearman's Correlation. 代谢组学研究中统计方法的重新评估:一个Spearman相关的案例。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-24 DOI: 10.1016/j.molp.2024.12.014
Yoshiyasu Takefuji
{"title":"Reevaluating Statistical Methods in Metabolomic Studies: A Case for Spearman's Correlation.","authors":"Yoshiyasu Takefuji","doi":"10.1016/j.molp.2024.12.014","DOIUrl":"https://doi.org/10.1016/j.molp.2024.12.014","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896454","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Plant Retromer Components SNXs Bind to ATG8 and CLASP to Mediate Autophagosome Movement along Microtubules. 植物逆转录成分SNXs与ATG8和CLASP结合介导自噬体沿微管运动。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-23 DOI: 10.1016/j.molp.2024.12.013
Yanglan Liao, Xibao Li, Wenlong Ma, Xinyi Lin, Jiayi Kuang, Xuanang Zheng, Zien Li, Fanfan Qiao, Chuanliang Liu, Jun Zhou, Faqiang Li, Ruixi Li, Byung-Ho Kang, Hongbo Li, Caiji Gao

In eukaryotic cells, autophagosomes are double-membrane vesicles that are highly mobile and traffic along cytoskeletal tracks. While core autophagy-related proteins (ATGs) and other regulators involved in autophagosome biogenesis in plants have been extensively studied, the specific components regulating plant autophagosome motility remain elusive. In this study, using TurboID-based proximity labelling, we identify the retromer subcomplex comprising sorting nexin 1 (SNX1), SNX2a, and SNX2b as interacting partners of ATG8. Remarkably, SNX proteins decorate ATG8-labeled autophagosomes and facilitate their coordinated movement along microtubules. Depletion of SNX proteins restricts the motility of autophagosomes in the cytoplasm, resulting in decreased autophagic flux. Furthermore, we show that the microtubule-associated protein CLASP serves as a bridge, connecting the SNX-ATG8-decorated autophagosomes to the microtubules. Genetically, the clasp-1 mutant phenotype resembles that of plants with disrupted SNXs or microtubule networks, displaying diminished autophagosome motility and reduced autophagic flux. Collectively, our study unveils a hitherto unanticipated role of the SNXs subcomplex in connecting autophagosomes with microtubules to promote autophagosome mobility in Arabidopsis.

在真核细胞中,自噬体是高度移动的双膜囊泡,沿着细胞骨架轨道运输。虽然核心自噬相关蛋白(ATGs)和其他参与植物自噬体生物发生的调节因子已经被广泛研究,但调节植物自噬体运动的具体成分仍然是未知的。在这项研究中,使用基于turboid的接近标记,我们确定了由分选连接蛋白1 (SNX1)、SNX2a和SNX2b组成的逆转录子亚复合物是ATG8的相互作用伙伴。值得注意的是,SNX蛋白修饰atg8标记的自噬体,并促进它们沿微管协调运动。SNX蛋白的缺失限制了细胞质中自噬体的运动,导致自噬通量降低。此外,我们发现微管相关蛋白CLASP作为一个桥梁,将snx - atg8修饰的自噬体与微管连接起来。遗传上,clasp1突变表型类似于snx或微管网络中断的植物,表现出自噬体运动减弱和自噬通量降低。总的来说,我们的研究揭示了SNXs亚复合物在拟南芥中连接自噬体和微管以促进自噬体移动方面迄今未预料到的作用。
{"title":"The Plant Retromer Components SNXs Bind to ATG8 and CLASP to Mediate Autophagosome Movement along Microtubules.","authors":"Yanglan Liao, Xibao Li, Wenlong Ma, Xinyi Lin, Jiayi Kuang, Xuanang Zheng, Zien Li, Fanfan Qiao, Chuanliang Liu, Jun Zhou, Faqiang Li, Ruixi Li, Byung-Ho Kang, Hongbo Li, Caiji Gao","doi":"10.1016/j.molp.2024.12.013","DOIUrl":"https://doi.org/10.1016/j.molp.2024.12.013","url":null,"abstract":"<p><p>In eukaryotic cells, autophagosomes are double-membrane vesicles that are highly mobile and traffic along cytoskeletal tracks. While core autophagy-related proteins (ATGs) and other regulators involved in autophagosome biogenesis in plants have been extensively studied, the specific components regulating plant autophagosome motility remain elusive. In this study, using TurboID-based proximity labelling, we identify the retromer subcomplex comprising sorting nexin 1 (SNX1), SNX2a, and SNX2b as interacting partners of ATG8. Remarkably, SNX proteins decorate ATG8-labeled autophagosomes and facilitate their coordinated movement along microtubules. Depletion of SNX proteins restricts the motility of autophagosomes in the cytoplasm, resulting in decreased autophagic flux. Furthermore, we show that the microtubule-associated protein CLASP serves as a bridge, connecting the SNX-ATG8-decorated autophagosomes to the microtubules. Genetically, the clasp-1 mutant phenotype resembles that of plants with disrupted SNXs or microtubule networks, displaying diminished autophagosome motility and reduced autophagic flux. Collectively, our study unveils a hitherto unanticipated role of the SNXs subcomplex in connecting autophagosomes with microtubules to promote autophagosome mobility in Arabidopsis.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142885951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic, transcriptomic, and metabolomic analyses reveal convergent evolution of oxime biosynthesis in Darwin's orchid. 基因组学、转录组学和代谢组学分析揭示了达尔文兰花的肟生物合成趋同进化。
IF 17.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-12-18 DOI: 10.1016/j.molp.2024.12.010
Kai Jiang, Birger Lindberg Møller, Shaofan Luo, Yu Yang, David R Nelson, Elizabeth Heather Jakobsen Neilson, Joachim Møller Christensen, Kai Hua, Chao Hu, Xinhua Zeng, Mohammed Saddik Motawie, Tao Wan, Guang-Wan Hu, Guy Eric Onjalalaina, Yijiao Wang, Juan Diego Gaitán-Espitia, Zhiwen Wang, Xiao-Yan Xu, Jiamin He, Linying Wang, Yuanyuan Li, Dong-Hui Peng, Siren Lan, Huiming Zhang, Qing-Feng Wang, Zhong-Jian Liu, Wei-Chang Huang

Angraecum sesquipedale, also known as Darwin's orchid, possesses an exceptionally long nectar spur. Charles Darwin predicted the orchid to be pollinated by a hawkmoth with a correspondingly long proboscis, later identified as Xanthopan praedicta. In this plant-pollinator interaction, the A. sesquipedale flower emits a complex blend of scent compounds dominated by diurnally regulated oximes (R1R2C=N-OH) to attract crepuscular and nocturnal pollinators. The molecular mechanism of oxime biosynthesis remains unclear in orchids. Here, we present the chromosome-level genome of A. sesquipedale. The haploid genome size is 2.10 Gb and represents 19 pseudochromosomes. Cytochrome P450 encoding genes of the CYP79 family known to be involved in oxime biosynthesis in seed plants are not present in the A. sesquipedale genome nor in the genomes of other members of the orchid family. Metabolomic analysis of the A. sesquipedale flower revealed a substantial release of oximes at dusk during the blooming stage. By integrating metabolomic and transcriptomic correlation approaches, flavin-containing monooxygenases (FMOs) encoded by six tandem-repeat genes in the A. sesquipedale genome are identified as catalyzing the formation of oximes present. Further in vitro and in vivo assays confirm the function of FMOs in the oxime biosynthesis. We designate these FMOs as Orchid Oxime Synthases 1-6. The evolutionary aspects related to the CYP79 gene losses and neofunctionalization of FMO-catalyzed biosynthesis of oximes in Darwin's orchid provide new insights into the convergent evolution of biosynthetic pathways.

Angraecum sesquipedale,也被称为达尔文的兰花,拥有特别长的花蜜刺。查尔斯·达尔文曾预言,兰花是由一种具有相应长喙的飞蛾授粉的,后来被鉴定为黄原花。在这种植物与传粉者的相互作用中,a . sesquipedale花释放出一种复杂的气味混合物,以昼夜调节的肟(R1R2C=N-OH)为主,以吸引黄昏和夜间传粉者。兰花中肟生物合成的分子机制尚不清楚。在这里,我们提出了A. sesquipedale的染色体水平基因组。单倍体基因组大小为2.10 Gb,有19条假染色体。已知参与种子植物肟生物合成的CYP79家族的细胞色素P450编码基因不存在于A. sesquipedale基因组中,也不存在于兰科其他成员的基因组中。代谢组学分析显示,在开花阶段的黄昏,大量释放肟。通过整合代谢组学和转录组学相关方法,鉴定了A. sesquipedale基因组中6个串联重复基因编码的含黄素单加氧酶(FMOs)催化了肟的形成。进一步的体外和体内实验证实了FMOs在肟生物合成中的作用。我们将这些FMOs命名为兰花肟合成酶1-6。达尔文兰中CYP79基因丢失和fmo催化的肟类生物合成的新功能化的进化方面为生物合成途径的趋同进化提供了新的见解。
{"title":"Genomic, transcriptomic, and metabolomic analyses reveal convergent evolution of oxime biosynthesis in Darwin's orchid.","authors":"Kai Jiang, Birger Lindberg Møller, Shaofan Luo, Yu Yang, David R Nelson, Elizabeth Heather Jakobsen Neilson, Joachim Møller Christensen, Kai Hua, Chao Hu, Xinhua Zeng, Mohammed Saddik Motawie, Tao Wan, Guang-Wan Hu, Guy Eric Onjalalaina, Yijiao Wang, Juan Diego Gaitán-Espitia, Zhiwen Wang, Xiao-Yan Xu, Jiamin He, Linying Wang, Yuanyuan Li, Dong-Hui Peng, Siren Lan, Huiming Zhang, Qing-Feng Wang, Zhong-Jian Liu, Wei-Chang Huang","doi":"10.1016/j.molp.2024.12.010","DOIUrl":"https://doi.org/10.1016/j.molp.2024.12.010","url":null,"abstract":"<p><p>Angraecum sesquipedale, also known as Darwin's orchid, possesses an exceptionally long nectar spur. Charles Darwin predicted the orchid to be pollinated by a hawkmoth with a correspondingly long proboscis, later identified as Xanthopan praedicta. In this plant-pollinator interaction, the A. sesquipedale flower emits a complex blend of scent compounds dominated by diurnally regulated oximes (R<sub>1</sub>R<sub>2</sub>C=N-OH) to attract crepuscular and nocturnal pollinators. The molecular mechanism of oxime biosynthesis remains unclear in orchids. Here, we present the chromosome-level genome of A. sesquipedale. The haploid genome size is 2.10 Gb and represents 19 pseudochromosomes. Cytochrome P450 encoding genes of the CYP79 family known to be involved in oxime biosynthesis in seed plants are not present in the A. sesquipedale genome nor in the genomes of other members of the orchid family. Metabolomic analysis of the A. sesquipedale flower revealed a substantial release of oximes at dusk during the blooming stage. By integrating metabolomic and transcriptomic correlation approaches, flavin-containing monooxygenases (FMOs) encoded by six tandem-repeat genes in the A. sesquipedale genome are identified as catalyzing the formation of oximes present. Further in vitro and in vivo assays confirm the function of FMOs in the oxime biosynthesis. We designate these FMOs as Orchid Oxime Synthases 1-6. The evolutionary aspects related to the CYP79 gene losses and neofunctionalization of FMO-catalyzed biosynthesis of oximes in Darwin's orchid provide new insights into the convergent evolution of biosynthetic pathways.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142864900","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Molecular Plant
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1