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A synthetic transcription cascade enables direct in planta shoot regeneration for transgenesis and gene editing in multiple plants 合成的转录级联可以直接在植物茎再生中进行多株植物的转基因和基因编辑
IF 27.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-06 DOI: 10.1016/j.molp.2025.09.017
Arjun Ojha Kshetry, Kaushik Ghose, Anshu Alok, Vikas Devkar, Vidhyavathi Raman, Robert M. Stupar, Luis Herrera-Estrella, Feng Zhang, Gunvant B. Patil
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引用次数: 0
BIK1-mediated phosphorylation and SCFSKIP31-mediated ubiquitination coordinately control CNGC3 homeostasis and activity to fine-tune plant immunity. bik1介导的磷酸化和scfskip31介导的泛素化协同控制CNGC3的稳态和通道活性,微调植物免疫。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-09-15 DOI: 10.1016/j.molp.2025.09.012
Hang Yi, Meng-Jiao Liu, You-Ping Xu, Xin-Zhong Cai

Cyclic nucleotide-gated ion channels (CNGCs) are key components in pattern-triggered immunity (PTI) signaling. Tight control of CNGC homeostasis is crucial for maintaining a balance between plant growth and immunity. Nevertheless, the mechanisms for fine-tuning CNGC homeostasis remain largely unknown. Here, we report that Arabidopsis thaliana CNGC3 is a functional calcium channel to mediate pattern-induced Ca2+ influx, PTI, and resistance to Sclerotinia sclerotiorum. We identified a CNGC interactor, Skp1-interacting protein 31 (SKIP31). In the absence of a pathogen, SKIP31 ubiquitinates CNGC3 at Lys8 and Lys33 of the K-X-V-R motif for degradation to repress plant immunity. When a pathogen attacks, activated receptor-like cytoplasmic kinase (RLCK) BOTRYTIS-INDUCED KINASE1 (BIK1) phosphorylates SKIP31 to inhibit its ubiquitin ligase activity and interaction with the CNGC3 N-terminal region, thereby suppressing CNGC3 protein degradation to promote immunity. Phosphorylation within the F box of SKIP31 at Ser88 and Ser93 and at the C-terminal Ser261 prevents its interaction with Skp1 and CNGC3, respectively. These phosphorylation sites are conserved in SKIP31 of different plant species, and SKIP31 interacts with all examined CNGCs, suggesting a pivotal role of SKIP31 phosphorylation in regulating CNGC stability and plant immunity. Moreover, biochemical assays revealed that BIK1 directly phosphorylates the CNGC3 cytoplasmic C-terminal region at four Ser residues to enhance its Ca2+ channel activity, demonstrating dual roles of BIK1 in both promoting CNGC channel activity and stabilizing the channel protein. Collectively, our work unveils an SCF ubiquitin ligase-RLCK control system that fine-tunes the homeostasis of CNGCs for orchestrating plant immunity.

环核苷酸门控离子通道(CNGCs)是模式触发免疫(PTI)信号的关键组成部分。严格控制CNGC稳态是植物生长-免疫平衡的关键。然而,微调CNGC稳态的机制在很大程度上仍然未知。在这里,我们报道了拟南芥CNGC3是一个功能性钙通道,介导模式诱导的Ca2+内流、PTI和对核核菌的抗性。我们鉴定了一个CNGC相互作用物,skp1相互作用蛋白31 (SKIP31)。在没有病原体的情况下,SKIP31在K-X-V-R基序的Lys8和Lys33位点泛素化CNGC3,降解抑制植物免疫。当病原体攻击时,激活的botrytis诱导的KINASE1 (BIK1)磷酸化SKIP31,抑制其泛素连接酶活性和与CNGC3 n端区相互作用,从而抑制CNGC3蛋白降解,促进免疫。SKIP31的F-box中Ser88和Ser93以及c -末端Ser261的磷酸化分别阻止了其与Skp1和CNGC3的相互作用。这些磷酸化位点在不同植物物种的SKIP31中都是保守的,并且SKIP31与所有检测的CNGC相互作用,这表明SKIP31磷酸化对CNGC的稳定性和植物免疫具有关键作用。此外,BIK1直接磷酸化CNGC c3细胞质c端区域的4个Ser残基,增强其Ca2+通道活性,表明BIK1在促进CNGC通道活性和稳定通道蛋白方面具有双重作用。我们的工作揭示了植物免疫CNGCs的SCF泛素连接酶- rlck控制系统。
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引用次数: 0
Design of effective synbiotics against aboveground insect herbivory through characterization of host plant rhizosphere microbiota and metabolites. 通过对寄主植物根际微生物群和代谢物的分析,设计有效的抗地上食草昆虫合生剂。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-09-29 DOI: 10.1016/j.molp.2025.09.016
Shengdie Yang, T Martijn Bezemer, Xiaohang Yuan, Xiaoyu Liu, Ting Wan, Feihong Liu, Tao Wen, Qirong Shen, Jun Yuan

Plants can cope with stresses via the "cry-for-help" strategy, but how aboveground insect herbivores induce alterations in the rhizosphere microbiota through eliciting this plant-driven response remains unexplored. In this study, we exposed cabbage plants to aboveground insect herbivory for five sequential planting rounds in the same soil. New cabbage plants, growing in the soils conditioned for five rounds, showed a significant increase in resistance to aboveground insect herbivory. Analyses of microbial communities in the rhizosphere of cabbage plants revealed that this effect was attributed to the accumulation of Pseudomonas in herbivore-conditioned soils. Rhizophere metabolic profiling further identified that some amino acids were present at higher concentrations in the rhizosphere of cabbage plants suffering from insect herbivory. Beneficial Pseudomonas species could be enriched by applying these amino acids. Notably, cabbage plants exhibited the highest resistance to insect herbivory following the application of a synbiotic, a combination of amino acids (prebiotics) and Pseudomonas spp. (probiotics). Moreover, we showed that Pseudomonas activates the jasmonate signaling pathway in the plant, which occurred in salicylic acid-deficient, but not in jasmonic acid-deficient, Arabidopsis thaliana mutants and led to the induction of glucosinolate-based defenses against insect herbivory. Collectively, this work reveals a belowground cry-for-help response in plants induced by aboveground herbivory, enabling the development of a novel synbiotic for plant health maintenance.

植物可以通过所谓的“呼救”策略来应对压力,但地面上的食草昆虫如何通过引发这种植物驱动的反应来诱导根际微生物群的变化仍未被探索。在这里,我们在相同的土壤中连续五次将卷心菜植物暴露于地上昆虫食草植物中。在5轮土壤条件下生长的新白菜植株对地上食草昆虫的抗性显著增加。这种效应归因于假单胞菌在草食条件下的土壤中的积累。虫食白菜根际氨基酸含量较高,施氨基酸可使假单胞菌富集。值得注意的是,白菜植株在施用合成菌(氨基酸(益生元)和假单胞菌(益生菌)的组合)后,表现出最高的抗虫性。此外,我们发现假单胞菌激活植物中的茉莉酸信号通路。这种激活发生在sa缺乏的拟南芥突变体中,而不在ja缺乏的拟南芥突变体中,并导致以硫代葡萄糖苷酸为基础的防御机制的诱导,众所周知,这种防御机制对昆虫食草性起作用。总的来说,这项工作揭示了植物在地上食草诱导下的地下“呼救”反应,这指导了植物健康维持的新型合生体的发展。
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引用次数: 0
Simple but effective: Minimalist NLR rewiring, maximal virus resistance. 简单而有效:最少的NLR重新布线,最大的病毒抗性。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-08-27 DOI: 10.1016/j.molp.2025.08.007
Ming Wu, Shanshan Zhao, Jianguo Wu
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引用次数: 0
Independent horizontal transfer of genes encoding α/β-hydrolases with strigolactone binding and hydrolytic activities from bacteria to fungi and plants. 编码α/β-水解酶与独角麦内酯结合和水解活性的基因从细菌到真菌和植物的独立水平转移。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-10-01 DOI: 10.1016/j.molp.2025.09.021
Qia Wang, Ye Ye, Lulu Wang, Yanlong Guan, Shuanghua Wang, Zhe Wang, Hang Sun, Steven M Smith, Jinling Huang

Strigolactones (SLs) are not only phytohormones that influence multiple aspects of plant growth and development but also signaling molecules for interactions between plants and certain fungi or bacteria. In plants, the SL receptor is an α/β-hydrolase (ABH) encoded by the DWARF14 (D14)/KARRIKIN INSENSITIVE2 (KAI2) gene family, which is known to be derived from proteobacterial RsbQ through horizontal gene transfer (HGT). In the phytopathogenic fungus Cryphonectria parasitica, another ABH named CpD14 was found to possess SL binding and hydrolytic activities and mediate SL responses, exhibiting potential SL perception functions. Here, we demonstrate that CpD14 and its homologs in Leotiomyceta fungi were derived from Actinobacteria through an independent HGT event, forming a distinct CpD14-like (CDL) family across fungi and bacteria. X-ray crystallography and structural analyses reveal that actinobacterial and fungal CDL proteins share a conserved core "α/β fold" domain with D14/KAI2/RsbQ but possess a unique lid domain. Biochemical assays show that both actinobacterial CDL and proteobacterial RsbQ can recognize and hydrolyze SLs, suggesting that they are pre-adapted for SL responses and potential perception. Both plant D14/KAI2 and fungal CDL proteins retained these functional activities, whereas they evolved distinct ligand specificities for SL structural variants. Collectively, this work reveals that independent HGT events from two bacterial groups provided plants and their interacting fungi with pre-adapted ABH proteins, which were deployed for SL perception or responses.

独脚金内酯(SLs)不仅是影响植物生长发育多个方面的植物激素,也是植物与某些真菌或细菌相互作用的信号分子。在植物中,SL受体是一种由D14/KAI2基因家族编码的α/β-水解酶(ABH),该基因家族是通过水平基因转移(HGT)从变形细菌RsbQ中衍生出来的。在植物致病真菌Cryphonectria parasitica中,发现另一种ABH CpD14具有SL结合和水解活性,并介导SL反应,具有潜在的SL感知功能。在这里,我们证明了CpD14及其同源物在Leotiomyceta真菌中是通过独立的HGT事件从放线菌中衍生出来的,在真菌和细菌中形成了一个独特的CpD14样(CDL)家族。x射线晶体学和结构分析表明,放线菌和真菌CDL蛋白与D14/KAI2/RsbQ共享一个保守的核心‘α/β折叠’结构域,但具有独特的盖子结构域。生化实验表明放线菌CDL和变形菌RsbQ都能识别和水解SL,表明它们对SL反应和潜在感知有预适应。植物D14/KAI2蛋白和真菌CDL蛋白在进化出不同的配体特异性的同时保留了这些功能活性。这项工作表明,来自两个细菌群的独立HGT事件显然为植物及其相互作用的真菌提供了预适应的ABH蛋白,这些蛋白用于SL感知或反应。
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引用次数: 0
Reversible S-acylation of BONZAI1 orchestrates the internalization of immune receptors to balance plant development and immunity. BONZAI1可逆s酰化调控免疫受体内化,平衡植物发育和免疫。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-10-10 DOI: 10.1016/j.molp.2025.10.006
Xiaoshi Liu, Zhiying Wang, Shihui Li, Panpan Li, Meiqi Yuan, Xiaolin Lu, Chi Li, Yuewen Zheng, Zhendan Cao, Chuanliang Liu, Hongbo Li, Chao Wang, Caiji Gao, Chengwei Yang, Jianbin Lai

Plants have developed a multi-layered immune system to cope with pathogens. The receptors on the plasma membrane are controlled by endocytosis to modulate immune signaling, but the regulatory mechanisms of endocytosis in this process remain largely unclear. Here, we uncover that reversible S-acylation of BONZAI1 (BON1), a conserved copine-family protein that regulates development-immunity balance in Arabidopsis, contributes to the accurate control of endocytosis. BON1 is targeted by S-acylation, a type of protein lipidation, for its localization on the plasma membrane and its function in development and immunity. Furthermore, the S-acylation status of BON1 affects its association with the light-chain clathrin subunit CLC3 and regulates endocytosis. Specifically, PAT14 facilitates the S-acylation of BON1, while ABAPT11 mediates its de-S-acylation. Physiological levels of reversible S-acylation of BON1 are essential for endocytosis and the internalization of immune receptors. Interestingly, salicylic acid enhances ABAPT11-dependent de-S-acylation of BON1 to amplify immune signaling. Collectively, our study reveals that reversible S-acylation of BON1 precisely regulates immune receptor internalization for balancing plant development and immunity, providing potential targets that may be used to improve crop yields and disease resistance.

植物已经形成了精确的抗病免疫系统,质膜上的受体受胞吞作用控制,调节免疫信号,但胞吞作用在这一过程中的调控尚不清楚。本研究揭示了BONZAI1 (BON1)的可逆s酰化,BON1是拟南芥中一个保守的copine家族蛋白,用于发育-免疫平衡,有助于准确控制内吞噬。由于BON1在质膜上的定位及其在发育和免疫中的作用,BON1被s -酰化(一种蛋白质脂化)靶向。此外,BON1的s酰化状态影响其与轻链网格蛋白亚基CLC3的结合并调节内吞作用。具体来说,PAT14促进BON1的s酰化,而ABAPT11介导BON1的去s酰化。BON1可逆s酰化的生理水平对内吞作用和免疫受体的内化至关重要。有趣的是,水杨酸可以增强abapt11依赖性BON1的去s酰化,从而放大免疫信号。研究内吞作用在植物发育和免疫平衡中的调节作用,有助于提高作物产量和抗病性。
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引用次数: 0
Designing better crops with phased pangenomes. 用分阶段泛基因组设计更好的作物。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-08-28 DOI: 10.1016/j.molp.2025.08.014
Qichao Lian, Wen-Biao Jiao, Yingxiang Wang
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引用次数: 0
Redefining agroecological zones in China to mitigate climate change impacts on maize production. 重新界定中国农业生态区以减轻气候变化对玉米生产的影响。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-09-10 DOI: 10.1016/j.molp.2025.09.005
Chuan Tang, Chunmeng Wang, Zhenwei Zhang, Yilan Cao, Mustafa Bulut, Yingjie Xiao, Xiaoyun Li, Tao Xiong, Jianbing Yan, Tingting Guo

This study introduces multi-dimensional environment (MDE) zoning to enhance maize resilience and improve stagnant yields in China amid climate change. Utilizing comprehensive environmental and yield data, MDE zoning accurately identifies areas for targeted, climate-adaptive breeding. The tool provides a flexible framework for updates using annual variety testing and daily environmental data, optimizing maize production and resource allocation.

在气候变化背景下,引入多维环境区划(Multi-Dimensional Environment, MDE)提高中国玉米抗灾能力,改善停滞不前的产量。利用综合的环境和产量数据,MDE分区准确地确定了有针对性的、适应气候的育种区域。该工具提供了一个灵活的框架,利用年度品种测试和日常环境数据进行更新,优化生产和资源分配。
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引用次数: 0
Persulfidation of host NADPH oxidase RbohB by rhizobial 3-mercaptopyruvate sulfurtransferase maintains redox homeostasis and promotes symbiotic nodulation in soybean. 根瘤菌3-巯基丙酮酸硫转移酶对宿主NADPH氧化酶RbohB的过硫化作用维持氧化还原稳态,促进大豆共生结瘤。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-09-15 DOI: 10.1016/j.molp.2025.09.013
Weiqin Zhang, Wuyu Liu, Kai Wang, Huaping Cheng, Xiaoli Bai, Jianhua Zhang, Gehong Wei, Juan Chen

Reactive oxygen species play a crucial role in various stages of the legume-rhizobia symbiosis, from initial nodulation signaling to nodule senescence. However, how rhizobial redox-related proteins regulate symbiotic nodulation in legumes remains largely unknown. By combining transcriptomics, proteomics, and biochemical and molecular genetics, we investigated the role of the Sinorhizobium fredii Q8 enzyme 3-mercaptopyruvate sulfurtransferase (3MST). Although 3MST was not the primary enzyme responsible for hydrogen sulfide (H2S) production under our conditions, its absence significantly impaired symbiotic nodule development, redox homeostasis, infection capacity, and nitrogen-fixation efficiency in soybean. We identified a host plasma membrane-localized NADPH oxidase, respiratory burst oxidase homolog B (RbohB), as a key regulator of immune activation during nodule development. Notably, 3MST was secreted during nodulation and localized in the nucleoid and cytoplasmic membrane, where it interacts with and persulfidates RbohB at Cys791, thereby suppressing the NADPH oxidase activity of RbohB. We observed that 3MST-mediated persulfidation of RbohB maintains symbiotic redox balance and promotes nodule development. Genetic analyses in soybean, including RbohB overexpression, RNA interference, and site-directed mutagenesis at Cys791, further supported this observation, linking the 3MST-RbohB interaction to effective rhizobial colonization and improved plant growth. Taken together, these findings uncover a rhizobia-initiated symbiotic regulatory mechanism by which a rhizobial sulfurtransferase modulates soybean RbohB via persulfidation to limit NADPH oxidase activity and promote nodulation.

活性氧(ROS)在豆科植物与根瘤菌共生的各个阶段起着至关重要的作用,从最初的结瘤信号传导到根瘤衰老。然而,根瘤菌氧化还原相关蛋白如何调节豆科植物的共生结瘤仍是未知的。通过结合转录组学、蛋白质组学、生化和分子遗传学,我们研究了fredii Sinorhizobium Q8酶3-巯基丙酮酸硫转移酶(3MST)的作用。虽然在我们的研究条件下,3MST不是硫化氢(H2S)的主要来源,但它的缺失严重破坏了大豆共生根瘤的发育、氧化还原稳态、侵染能力和固氮效率。我们发现宿主质膜定位的NADPH氧化酶(RbohB)是在结节发展过程中激活免疫反应的关键调节因子。值得注意的是,3MST定位于类核和细胞质膜,并在结瘤期间分泌,在那里它与RbohB和过硫化的Cys791相互作用,抑制NADPH氧化酶的活性。这种3mst介导的调控维持了共生氧化还原平衡,促进了结节的发育。大豆Cys791基因中涉及RbohB过表达、RNA干扰和定点突变的遗传分析支持了该模型,将3MST-RbohB相互作用与有效的根瘤菌定植和改善植物生长联系起来。总的来说,我们的发现揭示了根瘤菌-宿主氧化还原途径,其中根瘤菌硫转移酶通过过硫化调节RbohB以促进结瘤。
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引用次数: 0
The RLI1-OsPUB77-OsBZR3 module mediates the crosstalk between phosphate starvation and brassinosteroid signaling pathways to shape rice shoot architecture. RLI1-OsPUB77-OsBZR3模块介导磷酸盐饥饿和油菜素内酯信号通路之间的串音,从而形成水稻茎部结构。
IF 24.1 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 Epub Date: 2025-09-27 DOI: 10.1016/j.molp.2025.09.019
Kai Wang, Peng Yan, Jiangfan Guo, Wei Li, Shichen Zhou, Yijian Liu, Jiming Xu, Yu Liu, Yunrong Wu, Zhongchang Wu, Peng Wang, Chuanzao Mao, Xiaorong Mo

Plant architecture is a critical agronomic trait directly affecting planting density and crop yield. Phosphate (Pi) starvation in rice (Oryza sativa) leads to a significant reduction in tiller number and a more upright leaf angle. Insensitivity to brassinosteroid (BR) signaling can lead to similar phenotypes. However, the molecular mechanisms underlying how Pi affects plant architecture through brassinosteroid signaling remain obscure. In this study, we demonstrate that the Pi starvation-induced E3 ligase OsPUB77 regulates rice shoot architecture by affecting leaf angle and tiller number. We further revealed that the Pi-signaling-related transcription factor RLI1a releases its repression of the expression of OsPUB77 under Pi deficiency. Subsequently, the accumulated OsPUB77 influences shoot architecture by ubiquitinating OsBZR3 to inhibit BR signaling. Furthermore, we found that natural variation in two single-nucleotide polymorphisms within the OsPUB77 U-box domain coding OsPUB77R530 results in higher ubiquitin transfer activity than OsPUB77I530 due to a stronger interaction with E2. Introducing the OsPUB77pro::OsPUB77R530I transgene into the ospub77-1 background confirmed that OsPUB77R530 results in more upright leaves. Collectively, our work identifies an RLI1a-OsPUB77-OsBZR3 module that mediates the crosstalk between Pi and BR signaling to shape shoot architecture in response to Pi starvation in rice.

植物构型是直接影响种植密度和作物产量的重要农艺性状。水稻(Oryza sativa)的磷酸盐饥饿导致分蘖数显著减少和叶片垂直角度增加。对油菜素内酯(BR)信号不敏感可导致相似的表型。然而,磷酸盐通过油菜素内酯信号传导影响植物结构的潜在分子机制仍然不清楚。在这里,我们证明了磷酸盐信号相关转录因子RLI1a在磷酸盐缺乏(Pi缺乏症)下释放其对新型E3连接酶OsPUB77基因的抑制。积累的OsPUB77通过泛素化OsBZR3抑制BR信号传导介导植物结构。此外,OsPUB77 U-box结构域编码OsPUB77R530内的两个单核苷酸多态性的自然变异,由于与E2的相互作用更强,导致其泛素转移活性高于OsPUB77I530。将OsPUB77pro::OsPUB77R530I转基因引入ospub77-1背景,证实OsPUB77R530导致叶片更直立。我们的研究结果揭示了Pi和BR之间的RLI1a-OsPUB77-OsBZR3模块,该模块调节水稻对Pi饥饿的植物结构。
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引用次数: 0
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Molecular Plant
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