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DNA damage by oxidized fatty acids detected by DNA/SPE biosensor DNA/SPE生物传感器检测氧化脂肪酸对DNA的损伤
Q4 Agricultural and Biological Sciences Pub Date : 2021-12-04 DOI: 10.36547/nbc.1307
Ľudmila Sirotová, Marcela Matulová
Electrochemical DNA/screen-printed electrode biosensor (DNA/SPE biosensor) was tested for the detection of alterations in DNA formed as a consequence of the reaction between DNA and oxidative products of fatty acids. Interaction of DNA with a mixture of products generated during the oxidation of linoleic and oleic acids manifested DNA damage depending on a tested fatty acid and the presence of hydroperoxides and thiobarbituric acid reactive substances (TBARS) determined after the oxidation of fatty acids. A bigger extent of the DNA damage was registered in the case of the interaction with oxidized linoleic acid with the high content of TBARS. The results achieved suggest the possible application of DNA/SPE biosensor in the detection of an interaction between DNA and products of fatty acid oxidation.
电化学DNA/丝网印刷电极生物传感器(DNA/SPE生物传感器)用于检测DNA与脂肪酸氧化产物之间反应所形成的DNA变化。DNA与亚油酸和油酸氧化过程中产生的混合物的相互作用表现出DNA损伤,这取决于所测试的脂肪酸以及脂肪酸氧化后确定的氢过氧化物和硫代巴比妥酸反应物质(TBARS)的存在。与TBARS含量高的氧化亚油酸相互作用时,DNA损伤程度更大。研究结果提示了DNA/SPE生物传感器在检测DNA与脂肪酸氧化产物相互作用中的应用前景。
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引用次数: 0
Computer-aided diagnosis of lung malignity using multidimensional analysis of tumour marker data 基于肿瘤标志物数据多维分析的肺恶性肿瘤计算机辅助诊断
Q4 Agricultural and Biological Sciences Pub Date : 2021-12-04 DOI: 10.36547/nbc.1309
V. Mrázová, J. Mocák, E. Varmusová, Denisa Kavková
The aim of this work is assessing diagnostic performance of lung tumour markers. Three clinical laboratory tests were used for indicating lung malignancy in order to verify or predict the patient’s diagnosis. The data set of 182 patients was examined and two main groups of the patient samples were created – 86 with diagnosed malignancy (confirmed by histology) and 96 with diagnosed benign tumours or tuberculosis. The following tumour markers were analyzed: carcinoembryonic antigen and cytokeratin 19 fragment, which were sampled in the pleural exudates, and the same tumour markers in serum. In addition, the patient’s age and the gender of the corresponding individual were used as further variables in the original data matrix. Three laboratory tests were used for indicating lung malignancy in order to verify or predict the patient’s diagnosis not only by using the results of the chosen individual laboratory test but also applying multivariate statistical approach, which jointly utilizes all performed tests in the form of their optimal linear combination.
这项工作的目的是评估肺部肿瘤标志物的诊断性能。三项临床实验室测试用于指示肺部恶性肿瘤,以验证或预测患者的诊断。对182名患者的数据集进行了检查,并创建了两组主要的患者样本——86名诊断为恶性肿瘤(经组织学证实),96名诊断为良性肿瘤或结核病。分析了以下肿瘤标志物:癌胚抗原和细胞角蛋白19片段,它们在胸膜渗出液中取样,以及血清中相同的肿瘤标志物。此外,患者的年龄和相应个体的性别被用作原始数据矩阵中的进一步变量。为了验证或预测患者的诊断,我们使用了三种实验室测试来指示肺部恶性肿瘤,不仅使用了所选的单个实验室测试的结果,还应用了多元统计方法,该方法以最佳线性组合的形式联合利用了所有进行的测试。
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引用次数: 0
Phage display – a tool for detection and prevention against pathogens. A review 噬菌体展示——一种检测和预防病原体的工具。综述
Q4 Agricultural and Biological Sciences Pub Date : 2021-12-04 DOI: 10.36547/nbc.1304
B. Vidová, A. Godány
In this article are reviewed the promising uses of phage display in the areas such as microbial pathogens detection of and vaccination. Phage display is a molecular technique by which foreign proteins are expressed at the surface of phage particles. Such phages thereby become vehicles for expression that not only carry within them the nucleotide sequence encoding expressed proteins, but have also the capability to replicate. Recent data acquired from genome sequencing and advances in phage biology research have aided the development of phage-derived bacterial detection and treatment strategies.
本文综述了噬菌体展示在微生物病原体检测和疫苗接种等领域的应用前景。噬菌体展示是一种在噬菌体颗粒表面表达外源蛋白质的分子技术。这样的噬菌体因此成为表达载体,其内不仅携带编码表达蛋白质的核苷酸序列,而且具有复制能力。从基因组测序和噬菌体生物学研究进展中获得的最新数据有助于噬菌体衍生细菌检测和治疗策略的发展。
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引用次数: 0
Rapid detection methods of microbial pathogens in foods – a short survey 食品中微生物病原体的快速检测方法——一项简短的调查
Q4 Agricultural and Biological Sciences Pub Date : 2021-12-04 DOI: 10.36547/nbc.1303
B. Vidová, A. Godány
During harvesting, processing and handling operations foods may become contaminated with a wide range of microorganisms. This paper is presented as a short survey of recent used laboratory methods for foods microbial pathogen detection, briefly summarizing rapid, specific and sensitive methods useful for foods testing based on immunochemical and nucleic acid technologies. As the world becomes more concerned with safe foods, the demand for rapid detecting will only increase.
在收获、加工和处理过程中,食品可能会受到多种微生物的污染。本文简要介绍了近年来用于食品微生物病原体检测的实验室方法,简要总结了基于免疫化学和核酸技术的快速、特异和灵敏的食品检测方法。随着世界越来越关注安全食品,对快速检测的需求只会增加。
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引用次数: 0
Influence of nutrients in soil and vine leaves and meteorological factors upon vine crop and must quality 土壤和葡萄叶片养分及气象因子对葡萄产量和果实品质的影响
Q4 Agricultural and Biological Sciences Pub Date : 2021-12-04 DOI: 10.36547/nbc.1310
F. Kraic, J. Mocák, Miroslav Argay
The aim of this work was to analyze the supply of vine by nutrients by determining the content of nitrogen, phosphorus, potassium, calcium and magnesium in the vineyard soil and the vine leaves. Its further goal was to discover mutual relationships among the content of determined nutrients, the vine crop, and the quality of the produced must. Must quality was here defined by the contents of sugar and acids. The final goal was to investigate the relations among the nutrients, vine crop and its quality and meteorological factors measured during the whole year cycle, and especially at the time of important vegetation changes. The necessary evaluations were performed using multidimensional data analysis.
本工作的目的是通过测定葡萄园土壤和葡萄叶中氮、磷、钾、钙和镁的含量来分析葡萄藤的养分供应。它的进一步目标是发现确定的营养物质含量、葡萄作物和所生产的必须品的质量之间的相互关系。在这里,必须质量是由糖和酸的含量来定义的。最终目标是调查全年周期内,特别是在重要植被变化时期测得的营养物质、葡萄作物及其质量和气象因素之间的关系。使用多维数据分析进行了必要的评估。
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引用次数: 0
Bioaccumulation of 137Cs and 60Co in freshwater plants 137Cs和60Co在淡水植物中的生物累积
Q4 Agricultural and Biological Sciences Pub Date : 2021-12-04 DOI: 10.36547/nbc.1308
M. Horník, M. Pipíška, J. Augustín
Contamination of the aquatic environment by the heavy metals and radionuclides has become a serious concern in the world. In our study, gamma-spectrometry of freshwater plants Bacopa monnieri and Egeria densa growing in cultivation media spiked with 137CsCl and 60CoCl2 was used for quantitative determination of bioaccumulation kinetic and distribution Cs+ and Co2+ ions in plant tissues. We found, that bioaccumulation of Cs and Co by fully immersed B. monnieri in Hoagland media (HM) was dependent on ion concentration in medium. Approx. 5-times lower Cs uptake 2.9 nmol/g (d.w.) was obtained in plants cultivated in 20% HM than from deionized water. The maximal Co uptake was 4-times higher than cesium uptake at the same conditions. Both Cs and Co were localized mainly in roots. The highest immobilization from roots to shoots was found in the case of Co uptake from deionized water with concentration ratio [Co]leaves : [Co]stem : [Co]root = 1.00 : 5.33 : 56.8. Cesium uptake by submerged plant E. densa was also strongly dependent on nutrients concentration in medium. However, in the case of cobalt uptake this dependence was less pronounced. Nutrients concentration also had a significant influence on distribution of Cs between stems and leaves of E. densa. Cesium was localized in leaves, however with increasing of nutrients concentration in cultivation media Cs was localized for account of stem. On the other hand, cobalt was immobilized mainly in leaves in whole range of nutrients concentration. Obtained data can serve as a models for understanding of phytoaccumulation of radionuclides from open water ponds and water channels in the vicinity of nuclear power plants and monovalent and bivalent metals from industrial sources of contamination.
重金属和放射性核素对水生环境的污染已成为世界各国普遍关注的问题。本研究以淡水植物假马齿根(Bacopa monnieri)和绿豆(Egeria densa)为研究对象,在137CsCl和60CoCl2加标培养基中,采用γ -能谱法定量测定了Cs+和Co2+离子在植物组织中的生物积累动力学和分布。研究发现,完全浸没的monnieri在Hoagland培养基(HM)中对Cs和Co的生物积累依赖于培养基中的离子浓度。与去离子水相比,在20% HM中栽培的植物对碳的吸收量约为2.9 nmol/g (d.w.)的5倍。在相同条件下,最大Co吸收量是铯吸收量的4倍。Cs和Co主要分布在根中。当去离子水吸收Co的浓度比为[Co]叶:[Co]茎:[Co]根= 1.00:5.33:56.8时,从根到梢的固定效果最好。沉水植物对铯的吸收也强烈依赖于培养基中营养物质的浓度。然而,在钴摄取的情况下,这种依赖性不太明显。养分浓度对叶柄间Cs的分布也有显著影响。铯主要集中在叶片上,但随着培养基中养分浓度的增加,铯主要集中在茎上。另一方面,在整个营养浓度范围内,钴主要在叶片中固定化。获得的数据可以作为了解核电站附近开放池塘和水道中放射性核素的植物积累以及工业污染源的单价和二价金属的模型。
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引用次数: 1
Formation of Streptomyces protoplasts during cultivation in liquid media with lytic enzyme 链霉菌原生质体在溶酶液体培养基中培养过程中的形成
Q4 Agricultural and Biological Sciences Pub Date : 2021-12-04 DOI: 10.36547/nbc.1305
Z. Brnáková, A. Rusnáková, A. Godány, J. Herdu
Many streptomycetes strains are hardly or not at all transformable via protoplasts, or there is a problem with the regeneration of protoplasts. We found that protoplasts are formed directly in cultivation media under submerged conditions in the presence of lytic enzyme. Actinophage μ1/6 endolysin and lysozyme were used in this study. Streptomyces strains were cultivated in several media with glycine and lytic enzyme for 24 and 48h. The highest amounts of protoplasts (about 3 x 107 cfu/ml of cultivation medium) together with the highest regeneration (95%) and transformation frequency (about 2 x 106 – 107 cfu/μg DNA) were obtained reproducibly in YEME medium with high sucrose content. S. aureofaciens B96, as hardly transformable strain because of difficulties with protoplast preparation and their further regeneration, was used in this study. The same procedure was applied to S. lividans 66 TK24 and S. coelicolor A3(2), streptomycetes model strains, to confirm the general use of this method. Moreover, such cultivation process was appropriate for additional quick isolation of either chromosomal as well as plasmid DNA that could be further used in recombinant DNA techniques.
许多链霉菌菌株很难或根本不能通过原生质体转化,或者原生质体的再生存在问题。我们发现原生质体在培养液中溶解酶存在的条件下直接形成。采用放线酶μ1/6内溶酶和溶菌酶进行研究。将链霉菌菌株在甘氨酸和酵解酶的培养基中培养24和48h。在高蔗糖含量的YEME培养基中获得了最高的原生质体数量(约3 × 107 cfu/ml)、最高的再生率(95%)和最高的转化频率(约2 × 106 ~ 107 cfu/μg DNA)。金黄色葡萄球菌B96是一种难以转化的菌株,因为其原生质体制备和再生困难。对S. lividans 66 TK24和S. coelicolor A3(2)链霉菌模型菌株进行了同样的处理,以证实该方法的通用性。此外,这种培养过程适合于染色体和质粒DNA的额外快速分离,可以进一步用于重组DNA技术。
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引用次数: 0
Sequences analysis of chloroplast psbA-trnH region in Citrus L. (Rutaceae) species from the Aegean region of Turkey 土耳其爱琴海地区柑橘属植物叶绿体psbA-trnH区序列分析
Q4 Agricultural and Biological Sciences Pub Date : 2021-11-30 DOI: 10.36547/nbc.877
E. Sevindik, Gaye Zeynep Canbolat, İlayda İrem Moral, M. Sujka
In this study, sequences analysis of some Citrus species distributed in Turkey's Aegean region was based on the cpDNA psbA-trnH  region. The sequences for psbA-trnH regions of the outgroups were retrieved from NCBI GenBank. Genomic DNA was isolated from healthy and green leaves. Total genomic DNA was extracted using GeneMark DNA isolation Plant Kit. The psbA-trnH region was amplified using primers psbA and trnH. DNA sequences were edited using the Sequencher 5.4.6. Sequencing data were analyzed using MEGA 6.0 software. Maximum likelihood (ML) tree was created to determine the relationships between Citrus taxa.  cpDNA psbA-trnH  sequences ranged between 426 and 470 nucleotides. Maximum likelihood phylogenetic tree is composed of two clades. The divergence values differed between 0.000 and 0.012. According to the results of the study, the separation of Citrus species in phylogenetic tree obtained with psbA-trnH sequence data was realized. However, it has been found that cpDNA psbA-trnH sequence populations of species belong together. In addition, the phylogenetic relationship between the sequence data of some species belonging to the Rutaceae family taken from NCBI and Citrus species was revealed.
本研究基于cpDNA psbA-trnH区对分布在土耳其爱琴海地区的柑橘进行了序列分析。外群psbA-trnH区序列从NCBI GenBank检索。从健康和绿色叶片中分离出基因组DNA。使用GeneMark DNA分离植物试剂盒提取总基因组DNA。利用引物psbA和trnH扩增psbA-trnH区。使用Sequencher 5.4.6编辑DNA序列。测序数据采用MEGA 6.0软件进行分析。建立了最大似然树(ML)来确定柑橘类群间的关系。cpDNA psbA-trnH序列在426 ~ 470个核苷酸之间。最大似然系统发育树由两个支系组成。散度值在0.000 ~ 0.012之间。根据研究结果,实现了利用psbA-trnH序列数据获得的柑橘种系统发育树的分离。然而,已经发现cpDNA psbA-trnH序列属同一种群。此外,还揭示了NCBI芦花科部分物种的序列数据与柑桔种的系统发育关系。
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引用次数: 1
Amylolytic enzymes - focus on the alpha-amylases from Archae and plants 淀粉酶-专注于来自古菌和植物的α淀粉酶
Q4 Agricultural and Biological Sciences Pub Date : 2021-11-29 DOI: 10.36547/nbc.1284
Š. Janeček
Amylolytic enzymes represent a group of starch hydrolases and related enzymes that are active towards the α-glycosidic bonds in starch and related poly- and oligosaccharides. The three best known amylolytic enzymes are α-amylase, β-amylase and glucoamylase that, however, differ from each other by their amino acid sequences, three-dimensional structures, reaction mechanisms and catalytic machineries. In the sequence-based classification of all glycoside hydrolases (GHs) they have therefore been classified into the three independent families: GH13 (α-amylases), GH14 (β-amylases) and GH15 (glucoamylases). Some amylolytic enzymes have been placed to the families GH31 and GH57. The family GH13 together with the families GH70 and GH77 constitutes the clan GH-H, well-known as the α-amylase family. It contains more than 6,000 sequences and covers 30 various enzyme specificities sharing the conserved sequence regions, catalytic TIM-barrel fold, retaining reaction mechanism and catalytic triad. Among the GH13 α-amylases, those produced by plants and archaebacteria exhibit common sequence similarities that distinguish them from the α-amylases of the remaining taxonomic sources. Despite the close evolutionary relatedness between the plant and archaeal α-amylases, there are also specific differences that discriminate them from each other. These specific differences could be used in an effort to reveal the sequence-structural features responsible for the high thermostability of the α-amylases from Archaea.
淀粉水解酶代表一组淀粉水解酶和相关酶,它们对淀粉和相关聚低聚糖中的α-糖苷键具有活性。三种最著名的淀粉分解酶是α-淀粉酶、β-淀粉酶和葡糖淀粉酶,但它们的氨基酸序列、三维结构、反应机制和催化机制各不相同。因此,在基于序列的所有糖苷水解酶(GHs)分类中,它们被分为三个独立的家族:GH13(α-淀粉酶)、GH14(β-淀粉酶)和GH15(葡糖淀粉酶)。一些淀粉分解酶已被归入GH31和GH57家族。家族GH13与家族GH70和GH77一起构成家族GH-H,被称为α-淀粉酶家族。它包含6000多个序列,涵盖了30种不同的酶特异性,共享保守序列区、催化TIM桶折叠、保留反应机制和催化三联体。在GH13α-淀粉酶中,由植物和古细菌产生的酶具有共同的序列相似性,这将它们与其他分类来源的α-淀粉酶区分开来。尽管植物和古菌α-淀粉酶之间有着密切的进化关系,但它们之间也存在着特定的差异。这些特定的差异可以用来揭示古菌α-淀粉酶高热稳定性的序列结构特征。
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引用次数: 5
Genetic improvement of wheat - A review 小麦遗传改良研究进展
Q4 Agricultural and Biological Sciences Pub Date : 2021-11-29 DOI: 10.36547/nbc.1285
E. Gregová
Bread wheat (Triticum aestivum L.) plays a major role among the few crop species being extensively grown as staple food sources. As the human population grows, new methods and approaches must be found to attain wheat cultivars with improved characteristics. The challenge now is to produce higher-yielding varieties with good technological quality that are resistant or tolerant to a wide range of biotic and abiotic stresses. However, because of the critical nutritional status of human population, there is an urgent need for development of such wheat varieties that would be more nutritious (with improved protein, zinc, iron, etc. value), meeting our health demands. This article summarises present status in this field.
面包小麦(Triticum aestivum L.)是少数被广泛种植的主要粮食作物之一。随着人口的增长,必须找到新的方法和途径来获得具有改良性状的小麦品种。现在的挑战是生产具有良好技术质量的高产品种,这些品种能够抵抗或耐受广泛的生物和非生物胁迫。然而,由于人类的营养状况危急,迫切需要开发这样的小麦品种,将更有营养(提高蛋白质,锌,铁等价值),以满足我们的健康需求。本文综述了该领域的研究现状。
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引用次数: 14
期刊
Nova Biotechnologica et Chimica
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