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Metal-Tolerant Rhizobacteria Alleviate Aluminum Toxicity in Maize Via Biosorption, Antioxidant Activation, and ROS Reduction. 耐金属根杆菌通过生物吸附、抗氧化激活和ROS还原减轻玉米铝毒性。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70749
Talat Ilyas, Mohammad Shahid, Nida Fatima, Alvina Farooqui, Shareen Niyazi, Mohammad Altaf

Aluminum (Al) is a major environmental pollutant that disrupts plant metabolism, inhibits growth, and reduces crop productivity. Beneficial metal-tolerant rhizobacteria can help plants mitigate Al stress. This study evaluated the potential of metal-tolerant rhizobacteria to enhance Al tolerance in maize (Zea mays L.). Pseudomonas azotoformans PSZ-1 (Accession no. PV605389.1) and Achromobacter sp. PSZ-5 (Accession no. PV639388.1) tolerated 120 and 100 μM Al, respectively, produced PGP substances, and effectively biosorbed Al3+ ions. Aluminum, particularly at 80 μM, had phytotoxic effects on maize, reducing growth and photosynthetic traits while elevating ROS, oxidative stress, and metal uptake. Inoculation with PSZ-1 and PSZ-5 alleviated Al-induced toxicity, enhancing maize performance under metal stress. Both strains significantly (p ≤ 0.05) improved root biomass (30.7%, 35.7%), carotenoids (23.4%, 29.8%), chlorophyll fluorescence (27.2%, 29.4%), photosynthetic rate (24.8%, 33%), and stomatal conductance (29.7%, 35.4%) in 20 μM Al3+-stressed maize over uninoculated controls. ROS (H2O2, superoxide) and oxidative stress markers (EL, MDA) were significantly reduced (p ≤ 0.001) in bacterial-primed maize. Bacterial inoculation reduced Al accumulation in roots and shoot tissues of maize. At 40 μM Al, PSZ-5 significantly upregulated the activities of APX, CT, and POD by 30.1%, 26.8%, and 22.6%, while PSZ-1 maximally enhanced SOD and GR by 37.8% and 25.6% in roots, respectively. Multivariate analyses confirmed the strong parameter associations among treatments. Overall, applied PGPR strains showed promise for bioremediation of Al-contaminated soils and improving maize growth and tolerance. Future work should validate their performance under field conditions and explore molecular mechanisms and microbial consortia development.

铝(Al)是一种主要的环境污染物,破坏植物代谢,抑制生长,降低作物生产力。有益的耐金属根瘤菌可以帮助植物减轻铝胁迫。本研究评价了耐金属根瘤菌提高玉米耐铝能力的潜力。偶氮假单胞菌pz1(加入编号:PV605389.1)和无色杆菌sp. PSZ-5(文献登记号:PV639388.1)分别耐受120 μM和100 μM Al,产生PGP物质,并有效吸附Al3+离子。铝,特别是80 μM铝,对玉米具有植物毒性作用,降低生长和光合特性,同时增加活性氧、氧化应激和金属吸收。接种PSZ-1和PSZ-5可减轻铝毒性,提高金属胁迫下玉米的生产性能。与未接种20 μM Al3+的对照相比,两菌株均显著提高了根系生物量(30.7%、35.7%)、类胡萝卜素(23.4%、29.8%)、叶绿素荧光(27.2%、29.4%)、光合速率(24.8%、33%)和气孔导度(29.7%、35.4%)(p≤0.05)。细菌引发玉米的ROS (H2O2、超氧化物)和氧化应激标志物(EL、MDA)显著降低(p≤0.001)。细菌接种减少了铝在玉米根和茎组织中的积累。在40 μM Al处理下,PSZ-5显著上调APX、CT和POD活性,分别上调30.1%、26.8%和22.6%,PSZ-1最大上调SOD和GR活性,分别上调37.8%和25.6%。多变量分析证实了治疗之间的强参数相关性。总体而言,应用PGPR菌株对铝污染土壤的生物修复和提高玉米的生长和耐受性具有良好的前景。未来的工作应该在野外条件下验证它们的性能,并探索分子机制和微生物群落的发展。
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引用次数: 0
Herbivore-Induced Maize Volatiles Override Feeding Behavior and Elicit Antifeedant Responses in Spodoptera frugiperda. 草食诱导的玉米挥发物超越摄食行为并引发果夜蛾的拒食反应。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70751
Ramasamy Kanagaraj Murali-Baskaran, Yogesh Yele, Kailash Chander Sharma, Pankaj Sharma

The fall armyworm [Spodoptera frugiperda (J. E. Smith)] is an invasive pest of maize, posing significant threats to crop productivity. While herbivore-induced plant volatiles (HIPVs) play a central role in indirect plant defenses, the contribution of hydrocarbon-based volatile organic compounds to S. frugiperda resistance remains underexplored. This study investigated the VOC profiles of maize seedlings infested by S. frugiperda compared to uninfested controls, and evaluated the bioactivity of selected synthetic VOCs on larval feeding performance. GC-MS analysis revealed qualitative and quantitative shifts in the maize volatilome following herbivory, with 11 VOCs-including mesitylene, cyclohexane, hexadecane, and eicosane-uniquely induced in infested plants. Hydrocarbon compounds dominated the altered profiles, suggesting their potential defensive function. To validate their bioactivity, nine synthetic hydrocarbons were applied to semi-synthetic diets, and their effects on larval development, feeding, and nutritional indices were assessed. Among them, eicosane and cyclohexane exhibited the strongest suppressive effects, significantly reducing larval weight gain, food intake, frass production, relative growth rate (RGR), relative consumption rate (RCR), and approximate digestibility (AD). Octane and pentatriacontane showed moderate inhibitory effects, while tetracosane and henicosane were largely ineffective. The results demonstrate that specific hydrocarbon-based VOCs not only correlate with herbivore attack but also directly impair pest growth and digestion. This study underscores the functional importance of herbivory-induced hydrocarbons in maize defense and identifies promising VOCs for development as biocompatible agents in sustainable pest management strategies.

秋粘虫[Spodoptera frugiperda (J. E. Smith)]是一种入侵性玉米害虫,对玉米产量构成严重威胁。虽然草食诱导的植物挥发物(HIPVs)在植物的间接防御中起着核心作用,但烃类挥发物对frugiperda抗性的贡献仍未得到充分研究。本研究研究了被frugiperda侵染的玉米幼苗与未侵染的玉米幼苗的挥发性有机化合物(VOC)分布,并评价了几种合成挥发性有机化合物对幼虫取食性能的生物活性。GC-MS分析揭示了草食后玉米挥发物的定性和定量变化,其中11种挥发性有机化合物(包括三甲苯、环己烷、十六烷和二十烷)在侵染植株中被独特诱导。蚀变剖面以烃类化合物为主,具有潜在的防御作用。为了验证9种合成烃在半合成饲料中的生物活性,研究了它们对幼虫发育、摄食和营养指标的影响。其中,二十烷和环己烷的抑制作用最强,显著降低了幼虫增重、采食量、粗草产量、相对生长率(RGR)、相对消耗率(RCR)和近似消化率(AD)。辛烷和五正康烷表现出中等的抑制作用,而四糖烷和苯二糖烷则基本无效。结果表明,特定烃类挥发性有机化合物不仅与食草动物的攻击有关,而且直接影响害虫的生长和消化。本研究强调了草食诱导的碳氢化合物在玉米防御中的功能重要性,并确定了有前途的挥发性有机化合物,作为可持续害虫管理策略的生物相容性剂。
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引用次数: 0
Improving Plant Growth Under a Luminescent Solar Concentrator Emitting Red Light. 红光太阳能聚光器促进植物生长
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70750
Maria Pertesi, Zafiria Stefa, Katerina Thanasi, Anna Piperidou, Nikos Tostsidis, Andreas Benekos, Athanasios Koulopoulos, Christos Vasileiou, Elias Stathatos, George Zervoudakis
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引用次数: 0
Exploiting Laminaria digitata L. Aqueous Extract for Tomato Biostimulation: A Physiological and Metabolomic Approach. 利用海带水提物对番茄进行生物刺激:生理学和代谢组学方法。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70762
Ana R Circuncisão, Mateus Pereira, Maria Celeste Dias, Paulo R Oliveira-Pinto, Conceição Santos, Artur M S Silva, Manuel A Coimbra, Susana M Cardoso, Sónia Silva

Water deficit negatively affects crop yield and quality. Biostimulants, such as brown seaweed extracts, offer a sustainable solution to mitigate these effects. This study evaluated the impact of Laminaria digitata-aqueous extract (LE) on tomato performance and its potential to alleviate drought stress by examining morphological, physiological, and metabolic responses. Two-week-old tomato plants were foliar-sprayed with LE (0.0, 0.1, and 1.0 g L-1) and split into well-watered (WW) and water-limited (WL) groups. WW plants received regular irrigation, while WL faced a one-week drought. Then, half of the WL plants were rewatered and allowed to recover for 24 h (REC group). In general, LE effects were influenced by irrigation conditions, mainly impacting physiological and metabolomic parameters. Under WW conditions, LE decreased chlorophyll content, improved energy conversion by regulating photosystem antenna size, enhanced photochemical efficiency (ΦPSII) and gas exchange parameters (gs, Ci, PN), and promoted photosynthesis through stomatal modulation and RuBisCO activity. Conversely, under WL conditions, LE (especially 0.1 g L-1) decreased gas exchange parameters, but increased water use efficiency by inducing stomatal closure without impairing CO₂ assimilation. LE-treated plants exhibited ROS detoxification and phytohormone downregulation, which in turn negatively affected the content of certain secondary metabolites (e.g., catechin). Phytohormone modulation may result from reduced ROS levels or crosstalking with LE compounds, including mannitol, alginates, laminarans, minerals, and phlorotannins, which likely act synergistically to improve physiological regulation. Overall, LE application improved drought tolerance by enhancing photosystem regulation, phytohormone modulation, and antioxidant capacity in tomato plants, highlighting its potential use as a biostimulant for sustainable agriculture.

水分亏缺对作物产量和品质有不利影响。生物刺激剂,如褐藻提取物,提供了一个可持续的解决方案,以减轻这些影响。本研究通过形态、生理和代谢反应来评估海带水提取物(LE)对番茄生产性能的影响及其缓解干旱胁迫的潜力。2周龄番茄叶片喷施LE(0.0、0.1和1.0 g L-1),分为丰水(WW)组和限水(WL)组。WW的植物得到了定期灌溉,而WL则面临为期一周的干旱。然后,将一半的WL植株重新浇水,并让其恢复24 h (REC组)。总的来说,LE效应受灌溉条件的影响,主要影响生理和代谢组学参数。在WW条件下,LE降低叶绿素含量,通过调节光系统天线尺寸改善能量转换,提高光化学效率(ΦPSII)和气体交换参数(gs、Ci、PN),并通过气孔调节和RuBisCO活性促进光合作用。相反,在WL条件下,LE(尤其是0.1 g L-1)降低了气体交换参数,但在不影响CO 2同化的情况下,通过诱导气孔关闭提高了水分利用效率。le处理的植物表现出ROS解毒和植物激素下调,这反过来对某些次级代谢物(如儿茶素)的含量产生负面影响。植物激素调节可能是由于ROS水平降低或与LE化合物(包括甘露醇、海藻酸盐、层藻酸盐、矿物质和植绿单宁)的交叉作用,这些化合物可能协同作用以改善生理调节。总的来说,LE通过增强番茄的光系统调节、植物激素调节和抗氧化能力,提高了番茄的抗旱性,突出了其作为可持续农业生物刺激素的潜在用途。
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引用次数: 0
Allelic Variants, Genetic Effects, and Transcriptional Regulation of CoFAD7 in Camellia oleifera. 油茶CoFAD7等位基因变异、遗传效应和转录调控。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70780
Xiaoling Ma, Deyi Yuan, Yuting Zi, Jiaxin Chen, Jiaxi Zhang, Xinyue Tan, Yanxiu Zhang, Xiang Ouyang

Camellia oleifera Abel. is an important woody oil tree species in China, and increasing the content of polyunsaturated fatty acids (PUFAs), particularly α-linolenic acid (ALA), is critical for improving the quality of its oil. Fatty acid desaturase 7 (FAD7) is a key enzyme in ALA biosynthesis in plants. However, the allelic variation, functional role, and regulatory mechanisms underlying FAD7-mediated ALA accumulation in C. oleifera remain poorly understood. In the study, we cloned three homologous CoFAD7 genes: CoFAD7-1, CoFAD7-2, and CoFAD7-3 from C. oleifera 'Huashuo'. All three genes contained eight exons and seven introns, encoding 452 amino acids. Expression analysis revealed that CoFAD7 was highly expressed during the fruit maturation stage (258-333 DAP), correlating positively with seed ALA accumulation. Haplotypes analysis and transgenic experiments identified CoFAD7-G as a superior genotype associated with higher ALA content. Biochemical assays further showed that the transcription factor CoAP2-3 binds to the CoFAD7 promoter and activates its expression. These findings suggest that CoFAD7-G is a key determinant of ALA content, providing a theoretical basis for the early identification of high-ALA C. oleifera germplasm.

油茶。油树是中国重要的木本油树,提高其多不饱和脂肪酸(PUFAs)尤其是α-亚麻酸(ALA)的含量是提高油树品质的关键。脂肪酸去饱和酶7 (FAD7)是植物ALA生物合成的关键酶。然而,fad7介导的油桐ALA积累的等位基因变异、功能作用和调控机制尚不清楚。本研究从油松中克隆了CoFAD7-1、CoFAD7-2和CoFAD7-3三个同源基因。这三个基因都含有8个外显子和7个内含子,编码452个氨基酸。表达分析表明,CoFAD7在果实成熟期(258 ~ 333 DAP)高表达,与种子ALA积累呈正相关。单倍型分析和转基因实验表明,CoFAD7-G基因型具有较高的ALA含量。生化分析进一步表明,转录因子CoAP2-3与CoFAD7启动子结合,激活其表达。这些结果表明,CoFAD7-G是ALA含量的关键决定因素,为早期鉴定高ALA油桐种质资源提供了理论依据。
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引用次数: 0
Transcriptome and Metabolome Analyses Reveal the Mechanism by Which Uniconazole Affects Waterlogging Stress in Soybean. 转录组学和代谢组学分析揭示单硝唑影响大豆涝渍胁迫的机制。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70790
Shiya Wang, Yang Liu, Hongtao Xiang, Chao Fang, Naijie Feng, Dianfeng Zheng

Waterlogging stress typically causes submergence or partial submergence stress in plants, which negatively impacts agricultural production, from seed germination to vegetative and reproductive growth. Uniconazole (S3307) was recently used to minimize the damage caused by waterlogging. Here, we investigate the effects of S3307 on the growth, development, and yield of soybean under waterlogging stress. Morphological and physiological indexes, as well as the transcriptome and metabolome of soybean were analyzed in control condition and waterlogged condition with (WS) or without (W) spraying S3307. The results showed that waterlogging stress led to growth inhibition and reduced activity of antioxidant enzymes in soybean plants, resulting in a large accumulation of MDA content and ultimately causing yield reduction. Foliar spraying of S3307 increased stem diameter, reduced plant height, increased dry matter accumulation, increased antioxidant enzyme activities, inhibited MDA accumulation, and alleviated the yield reduction. The combined transcriptomics and metabolomics investigation demonstrated that, compared to Control, both W and WS treatments generated similar directional changes in triterpenoid metabolism and stress response pathways, suggesting that waterlogging stress activated these defense-related pathways. Notably, the strength of these reactions was considerably greater in the WS treatment than in the W treatment. Under waterlogging stress, foliar application of S3307 increased the expression of genes involved in flavonoid production and increased the accumulation of unsaturated fatty acids-substances known to help in cell membrane stability-when compared to the W treatment. In summary, our findings show that S3307 does not alter the direction of waterlogging-induced reactions but rather greatly increases their strength, thereby positively regulating soybean waterlogging tolerance. This establishes a biochemical mechanism and theoretical foundation for using plant growth regulators to reduce stress.

涝渍胁迫通常会导致植物淹水或部分淹水胁迫,对农业生产产生负面影响,从种子萌发到营养和生殖生长。最近使用了Uniconazole (S3307)来减少内涝造成的损害。本文研究了涝渍胁迫下S3307对大豆生长发育及产量的影响。分析了施用(W)和未施用(W) S3307的对照和涝渍条件下大豆的形态、生理指标以及转录组和代谢组。结果表明,涝渍胁迫导致大豆植株生长受到抑制,抗氧化酶活性降低,导致MDA含量大量积累,最终导致产量降低。叶面喷施S3307增加了茎粗,降低了株高,增加了干物质积累,提高了抗氧化酶活性,抑制了MDA积累,缓解了减产。转录组学和代谢组学联合研究表明,与对照相比,W和WS处理在三萜代谢和应激反应途径上产生了相似的方向性变化,表明涝渍胁迫激活了这些防御相关途径。值得注意的是,这些反应的强度在WS处理中明显大于W处理。在涝渍胁迫下,与W处理相比,叶面施用S3307增加了与类黄酮产生有关的基因的表达,增加了不饱和脂肪酸(已知有助于细胞膜稳定性的物质)的积累。综上所述,我们的研究结果表明,S3307不会改变涝渍诱导反应的方向,反而会大大增强其强度,从而正向调节大豆的涝渍耐受性。这为利用植物生长调节剂减轻胁迫的生化机制和理论基础奠定了基础。
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引用次数: 0
ChIP-MS in Plant Systems: Mapping the H3K27ac Proteome During the Greening Process. 植物系统中的ChIP-MS:在绿化过程中绘制H3K27ac蛋白质组。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70797
Alexis Brun, Marti Quevedo, Luis A Sterling, Dick H W Dekkers, Jeroen Demmers, Elton Paul Hudson, Åsa Strand

We have established a method for chromatin immunoprecipitation coupled to mass spectrometry (ChIP-MS) in Arabidopsis thaliana. We demonstrate its utility by investigating proteins associated with histone H3 lysine 27 acetylation (H3K27ac), a key epigenetic mark regulating photosynthesis-associated nuclear genes (PhANGs) during chloroplast development and establishment of photosynthesis. Purification of chromatin-associated proteins from light-grown Arabidopsis cell cultures identified 66 proteins associated with H3K27ac that met the selection criteria in the two replicate experiments: (i) 2-fold change in relation to IgG, (ii) at least two unique peptides, and (iii) relevant biological annotations. The identified proteins included chromatin remodelers, chromatin regulators and transcription factors with potential roles in H3K27ac deposition. To evaluate the physiological role of the candidates associated with the H3K27ac mark, we developed a rapid and reproducible phenotyping method based on controlled light scanning to determine chlorophyll accumulation in mutant seedlings. We complemented with pigment quantification and analysis of photosynthesis-associated nuclear genes (PhANGs) expression. Several mutants displayed altered greening, pigment accumulation, or affected photosynthetic gene expression consistent with a role during chloroplast development. Notably, chr11, chr17, and atpds5a mutants showed impaired pigment accumulation and reduced expression of PhANGs, whereas hmgb4 and mbd10 mutants exhibited increased greening and induction of PhANGs. Together, these findings establish ChIP-MS as a robust approach to identify histone mark-associated proteins in plants and provide a first set of candidate regulators of H3K27ac during chloroplast biogenesis. This technical advance opens new possibilities to discover chromatin-based regulation of plant development and environmental responses.

建立了拟南芥染色质免疫沉淀-质谱联用(ChIP-MS)方法。我们通过研究与组蛋白H3赖氨酸27乙酰化(H3K27ac)相关的蛋白质来证明它的实用性,组蛋白H3赖氨酸27乙酰化(H3K27ac)是在叶绿体发育和光合作用建立过程中调节光合作用相关核基因(PhANGs)的关键表观遗传标记。从光培养的拟南芥细胞中纯化染色质相关蛋白,鉴定出66种与H3K27ac相关的蛋白,这些蛋白符合两个重复实验的选择标准:(i)与IgG相关的2倍变化,(ii)至少两个独特的肽,以及(iii)相关的生物学注释。鉴定的蛋白质包括染色质重塑蛋白、染色质调节因子和转录因子,它们在H3K27ac沉积中具有潜在的作用。为了评估与H3K27ac标记相关的候选植株的生理作用,我们开发了一种基于受控光扫描的快速、可重复的表型方法来测定突变苗的叶绿素积累。我们补充了色素定量和光合作用相关核基因(PhANGs)表达分析。一些突变体显示出与叶绿体发育过程中作用一致的变色、色素积累或光合基因表达的改变。值得注意的是,chr11、chr17和atpds5a突变体表现出色素积累受损和PhANGs表达减少,而hmgb4和mbd10突变体表现出变绿和诱导PhANGs的增加。总之,这些发现建立了ChIP-MS作为鉴定植物组蛋白标记相关蛋白的可靠方法,并提供了叶绿体生物发生过程中H3K27ac的第一组候选调节因子。这一技术进步为发现基于染色质的植物发育调控和环境反应开辟了新的可能性。
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引用次数: 0
Machine Learning Approaches to Assess Soil Microbiome Dynamics and Bio-Sustainability. 评估土壤微生物动态和生物可持续性的机器学习方法。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70719
Roberta Pace, Maurilia M Monti, Salvatore Cuomo, Antonio Affinito, Michelina Ruocco

Understanding soil microbiota dynamics is essential for enhancing bio-sustainability in agriculture, yet the complexity of microbial communities hampers the prediction of their functional roles. Artificial intelligence (AI) and machine learning (ML) offer powerful tools to analyse high-dimensional microbiome data generated by high-throughput sequencing. Here, we apply unsupervised AI-based algorithms to uncover microbial patterns that are not immediately recognisable but are crucial for characterising the biological status of agricultural soils. Soil samples were collected from a site in Northern Italy managed under four strategies: conventional farming without organic matter (C), with organic matter (C + O), with beneficial microorganisms but without organic matter (M), and with both beneficial microorganisms and organic matter (M + O). Metagenomic amplicon sequencing of the 16S ribosomal RNA (rRNA) gene and the internal transcribed spacer (ITS) region was used to profile bacterial and fungal communities. Principal component analysis (PCA), k-means clustering, and t-distributed stochastic neighbour embedding (t-SNE) revealed coherent temporal trajectories in both datasets, with sampling time and crop presence emerging as dominant drivers of community assembly and only subtle compositional shifts attributable to treatments. Fungal communities exhibited higher plasticity and a stronger response to management than bacterial communities, which converged towards a stable oligotrophic core. Our findings highlight the complementary roles of fungal and bacterial guilds and show that unsupervised ML-based workflows provide an effective framework to disentangle temporal and treatment effects in complex microbiome datasets. This exploratory study lays the groundwork for future predictive models aimed at identifying microbial indicators of soil biological status and supporting bio-sustainable agronomic decisions.

了解土壤微生物群动态对提高农业生物可持续性至关重要,但微生物群落的复杂性阻碍了对其功能作用的预测。人工智能(AI)和机器学习(ML)为分析高通量测序产生的高维微生物组数据提供了强大的工具。在这里,我们应用无监督的基于人工智能的算法来揭示微生物模式,这些模式不能立即识别,但对于表征农业土壤的生物状态至关重要。从意大利北部的一个地点收集土壤样本,采用四种策略进行管理:无有机质(C)、有有机质(C + O)、有有益微生物但没有有机质(M)、有益微生物和有机质(M + O)。利用16S核糖体RNA (rRNA)基因和内部转录间隔区(ITS)的宏基因组扩增子测序来分析细菌和真菌群落。主成分分析(PCA)、k-均值聚类和t分布随机邻居嵌入(t-SNE)揭示了两个数据集中一致的时间轨迹,采样时间和作物存在成为群落聚集的主要驱动因素,只有微妙的成分变化可归因于处理。与细菌群落相比,真菌群落表现出更高的可塑性和对管理的更强响应,细菌群落向稳定的少营养核心聚集。我们的研究结果强调了真菌和细菌行会的互补作用,并表明基于无监督ml的工作流程为解开复杂微生物组数据集的时间和治疗效果提供了有效的框架。这项探索性研究为未来的预测模型奠定了基础,旨在识别土壤生物状况的微生物指标,并支持生物可持续的农艺决策。
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引用次数: 0
Introduction of 4D-Proteomics: A Breakthrough in Analyzing the Plant Proteomes During Stress Conditions. 4d -蛋白质组学的引入:逆境条件下植物蛋白质组学分析的突破。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70735
Ravi Gupta

Proteomics is defined as the identification, quantification, and characterization of the complete set of proteins expressed in a cell or tissue under specific conditions. The last two decades have witnessed rapid advancements in proteomics technologies, including the development of the Data-Independent Acquisition (DIA) mode, which has significantly improved the sensitivity, reproducibility, and depth of proteome coverage. These advancements, together with the development of cutting-edge data analysis tools, have undoubtedly facilitated the identification of stress-responsive proteins and potential biomarkers in different organisms. However, the identification of such stress-responsive proteins, particularly in plants, remains relatively challenging because of the presence of various high-abundance proteins such as RuBisCO, which hinders the identification and subsequent characterization of these stress-responsive proteins due to their low abundance. More recently, a four-dimensional (4D) proteomics approach has been introduced, which includes "ion mobility" as the fourth dimension to classical quantitative proteomics. This 4D-proteomics method utilizes trapped ion mobility spectrometry (TIMS) combined with parallel accumulation-serial fragmentation (PASEF), which significantly enhances the sensitivity and coverage of proteomics experiments, thus allowing the detection of low-abundance proteins. This review highlights the evolution of proteomic technologies, the development of the 4D proteomics workflow, and their potential application in unraveling the molecular mechanisms underlying plant responses to environmental stress conditions. In essence, this review article provides a comprehensive overview of the state-of-the-art in proteomics, emphasizing its transformative impact on plant science research and its potential to understand crop stress resilience.

蛋白质组学被定义为在特定条件下对细胞或组织中表达的一整套蛋白质进行鉴定、定量和表征。过去二十年见证了蛋白质组学技术的快速发展,包括数据独立采集(DIA)模式的发展,该模式显著提高了蛋白质组学覆盖的灵敏度、可重复性和深度。这些进步,加上尖端数据分析工具的发展,无疑促进了不同生物体中应激反应蛋白和潜在生物标志物的鉴定。然而,这种应激反应蛋白的鉴定,特别是在植物中,仍然相对具有挑战性,因为存在各种高丰度的蛋白,如RuBisCO,这阻碍了这些低丰度的应激反应蛋白的鉴定和后续表征。最近,引入了一种四维(4D)蛋白质组学方法,其中包括“离子迁移率”作为经典定量蛋白质组学的第四个维度。该4d蛋白质组学方法采用了捕获离子迁移谱法(TIMS)结合平行积累-序列片段法(PASEF),显著提高了蛋白质组学实验的灵敏度和覆盖范围,从而实现了低丰度蛋白质的检测。本文综述了蛋白质组学技术的发展,4D蛋白质组学工作流程的发展,以及它们在揭示植物对环境胁迫反应的分子机制方面的潜在应用。从本质上讲,这篇综述文章提供了最新的蛋白质组学的全面概述,强调其对植物科学研究的变革性影响及其在理解作物逆境抗性方面的潜力。
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引用次数: 0
Integration of Cytological and Transcriptomics Analyses Reveals How Escherichia coli Inoculation Enhances Suaeda Salsa Root Growth and Alleviates Cadmium-Salt Stress. 细胞学和转录组学分析揭示了大肠杆菌接种促进盐田根系生长和缓解镉盐胁迫的机制。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70763
Tao He, Huan-Zhan Zhou, Zhi-Min Xu, Kang Ma, Yi-Cai Zhang, Xi Zhang, Chu-Qin Feng, Ying-Ying Zhu, Si-Yi Wang, Wen-Xuan Hua, Qu-Sheng Li

To explore how plant growth-promoting rhizobacteria (PGPR) regulate stress-tolerant plant growth and enhance heavy metal remediation under combined cadmium (Cd) and salt stress, we conducted hydroponic experiments using Suaeda salsa inoculated with Escherichia coli-10,527. We investigated the changes in plant growth and stress tolerance, Cd translocation, cell ultrastructure, Cd subcellular distribution, and gene expression under hydroponic conditions. The results showed that inoculation improved plant biomass, stress tolerance, and Cd uptake, particularly under low Cd/salt concentrations. E. coli-10,527 colonized lateral root zones and secreted extracellular polymeric substances (EPS), which promoted flavonoid accumulation (by 12.68%-36.76%), thereby enhancing root growth and Cd accumulation. Compared with the uninoculated control, E. coli-10,527 inoculation altered the subcellular distribution of Cd in S. salsa; the proportion of Cd in the cytoplasm increased from 16.29% (29.06%) to 24.28% (45.57%) in roots (shoots). Transcriptomic analysis revealed the upregulation of genes (ZIPA, NRAMP3, and HMA4) potentially involved in enhanced Cd transport and vacuolar sequestration. Overall, inoculation with E. coli-10,527 can promote root development in S. salsa under Cd and salt stress, while facilitating simultaneous phytoremediation of Cd and salt. This study provides an effective microbial inoculation strategy for Cd remediation in saline soils affected by combined stresses.

为探究植物促生根瘤菌(PGPR)在镉和盐联合胁迫下调控植物耐胁迫生长和促进重金属修复的机制,以接种大肠埃希菌- 10527的salsa (Suaeda salsa)为材料进行了水培试验。研究了水培条件下植物生长和逆境耐受性、镉转运、细胞超微结构、镉亚细胞分布和基因表达的变化。结果表明,接种提高了植物生物量、抗逆性和Cd吸收,特别是在低Cd/盐浓度下。大肠杆菌- 10527在侧根区定植,分泌胞外聚合物质(EPS),促进黄酮类化合物积累(12.68% ~ 36.76%),从而促进根系生长和Cd积累。与未接种对照相比,大肠杆菌- 10527接种改变了萨尔萨菌Cd的亚细胞分布;根(芽)细胞质中Cd含量由16.29%(29.06%)增加到24.28%(45.57%)。转录组学分析显示,基因(ZIPA、NRAMP3和HMA4)的上调可能参与了镉转运和液泡封存的增强。综上所述,接种E. coli- 10527能够促进Cd和盐胁迫下salsa的根系发育,同时促进Cd和盐的同步修复。本研究为复合胁迫下盐渍土镉修复提供了有效的微生物接种策略。
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Physiologia plantarum
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