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Biostimulants in Agriculture: Editorial. 农业中的生物刺激素:社论。
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70046
Petronia Carillo, Jean-Christophe Avice, Marta W Vasconcelos, Patrick du Jardin, Patrick H Brown
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引用次数: 0
Assessment of cold resistance in tobacco varieties using JIP-test parameters and seedling growth.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70078
Rong-Rong Xie, Shengxin Wu, Wei-Lin Huang, Yaxin Luo, Jinbin Lin, Yazhi Cheng, Jianjun Lu, Wen Yu, Songbiao Chen, Wenqing Li, Li-Song Chen

Cold stress (CS) is a significant natural hazard, and distinguishing between plant cold resistance and sensitivity is critical for cultivar breeding and the development of germplasm resources. This study used 205 tobacco (Nicotiana tabacum L.) varieties from around the world to investigate the changes in the chlorophyll a fluorescence (OJIP) transients, JIP-test parameters, and seedling growth caused by seven days of CS (5°C) treatment. Their cold resistance was assessed using the cold-resistant coefficient, derived from the relative growth rate of shoots, damage scores, and JIP-test parameters. The results showed that total electron carriers per reaction center (Sm) and relative variable fluorescence at the I-step (VI) were better indicators of cold resistance than maximum quantum yield of photochemistry at t = 0 (Fv/Fm), which was widely used to assess plant cold resistance. Next, the study examined the effects of CS and subsequent recovery on OJIP transients, JIP-test parameters, and seedling growth in two highly resistant (HR) and two highly sensitive (HS) varieties to confirm the reliability of the assessment methods. The results indicated that HR varieties experienced less photoinhibitory damage to photosystem II, exhibited lower growth inhibition during CS, and showed better recovery during the recovery period compared to HS varieties. These findings suggested that the JIP-test parameters could serve as a reliable tool for assessing tobacco cold resistance and aid in selecting varieties with enhanced resilience to CS.

冷胁迫(CS)是一种重要的自然灾害,区分植物的抗寒性和敏感性对于品种培育和种质资源开发至关重要。本研究利用来自世界各地的 205 个烟草(Nicotiana tabacum L.)品种,研究了七天 CS(5°C)处理对叶绿素 a 荧光(OJIP)瞬态、JIP 测试参数和幼苗生长的影响。利用抗寒系数评估了它们的抗寒性,抗寒系数由芽的相对生长率、损伤评分和 JIP 试验参数得出。结果表明,与广泛用于评估植物抗寒性的 t = 0 时光化学的最大量子产率(Fv/Fm)相比,每个反应中心的总电子载流子(Sm)和 I 阶段的相对可变荧光(VI)是更好的抗寒性指标。接下来,研究考察了 CS 和随后的恢复对两个高抗性(HR)和两个高敏感性(HS)品种的 OJIP 瞬态、JIP 测试参数和幼苗生长的影响,以确认评估方法的可靠性。结果表明,与高抗性品种相比,高抗性品种的光系统 II 所受的光抑制损伤较小,在 CS 期间表现出较低的生长抑制,并且在恢复期表现出较好的恢复能力。这些研究结果表明,JIP 测试参数可作为评估烟草抗寒性的可靠工具,有助于选育抗寒性更强的品种。
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引用次数: 0
Contrasts in hydraulics underlie the divergent performances of Populus and native tree species in water-limited sandy land environments.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70075
Attaullah Khan, Xue-Wei Gong, Chi Zhang, Shen-Si Liu, Guang-You Hao

Populus tree species are commonly used for creating shelter forests in vast areas of northern China, at least partially due to their fast growth. However, they are facing severe problems of decline and mortality caused by drought. In contrast, tree species native to water-limited environments usually have slow growth and are currently not commonly used in afforestation, while these species are gaining more attention in forestry for their greater resilience to drought. In Horqin Sandy Land, we conducted a comparative analysis of xylem hydraulics and associated physiological traits between six Populus tree species and six tree species native to drought-prone areas. Compared to the native species, the Populus species exhibited significantly higher stem hydraulic conductivity but lower resistance to drought-induced xylem embolism than the native tree species. The observed interspecific variations and contrasts in xylem hydraulics between the two species groups were predominantly attributed to xylem anatomical characteristics at the pit level rather than at the tissue level. In line with the divergences in hydraulics, we found significantly lower intrinsic water use efficiency (WUEi) in Populus than in the native species, suggesting that the two groups adopted relatively acquisitive and conservative water use strategies, respectively. The trade-off between hydraulic efficiency and safety, as well as that between hydraulic efficiency and WUEi, underlies the contrasts in performance between Populus species and the native tree species, that is, fast growth of Populus species but high risk of hydraulic dysfunction when facing drought, and vice versa.

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引用次数: 0
Chickpea displays a temporal growth response to Mesorhizobium strains under well-watered and drought conditions. 在水分充足和干旱条件下,鹰嘴豆对中根瘤菌菌株的生长表现出时间响应。
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70041
Nasir Iqbal, Chris Brien, Nathaniel Jewell, Bettina Berger, Yi Zhou, R Ford Denison, Matthew D Denton

The relative performance of rhizobial strains could depend on their resource allocation, environmental conditions, and host genotype. Here, we used a high-throughput shoot phenotyping to investigate the effects of Mesorhizobium strain on the growth dynamics, nodulation and bacteroid traits with four chickpea (Cicer arietinum) varieties grown under different water regimes in an experiment including four nitrogen sources (two Mesorhizobium strains, and two uninoculated controls: nitrogen fertilised and unfertilised) under well-watered and drought conditions. We asked three questions. Does the impact of rhizobial strains on chickpea growth change with well-watered versus drought conditions? Do Mesorhizobium strains differ in their ability to influence biomass and nodule traits of chickpea varieties under well-watered and drought conditions? Are bacteroid size and amount of polyhydroxybutyrate modified by Mesorhizobium strain, chickpea variety, water availability and their interactions? Under well-watered conditions, chickpea inoculated with CC1192 showed higher shoot growth rates than M075 and accumulated high plant biomass at harvest. Under drought conditions, however, the shoot growth rate was comparable between CC1192 and M075, with no significant difference in plant biomass and symbiotic effectiveness at harvest. Across sources of variation, plant biomass varied 3.0-fold, nodules per plant 3.9-fold, nodule dry weight 3.0-fold, symbiotic effectiveness 1.5-fold, bacteroid size 1.4-fold and bacteroid polyhydroxybutyrate 1.4-fold. Plant biomass was negatively correlated with both bacteroid size and allocation to polyhydroxybutyrate under well-watered conditions, suggesting a trade-off between plant and rhizobial fitness. This study demonstrates the need to reassess rhizobial strain effectiveness across diverse environments, recognising the dynamic nature of their interaction with host plants.

根瘤菌菌株的相对表现可能取决于它们的资源分配、环境条件和宿主基因型。本研究采用高通量芽部表型分析方法,研究了4种不同水分条件下4种鹰嘴豆(Cicer arietinum)品种的生长动态、结瘤和拟杆菌性状的影响。试验包括4种氮源(2种中根瘤菌,以及2种未接种氮肥和未接种氮肥的对照)。我们问了三个问题。根瘤菌菌株对鹰嘴豆生长的影响是否随水分充足和干旱条件的变化而变化?在水分充足和干旱条件下,中根瘤菌菌株对鹰嘴豆品种生物量和根瘤性状的影响是否存在差异?多羟基丁酸的大小和数量是否受到中根瘤菌菌株、鹰嘴豆品种、水分有效性及其相互作用的影响?在水分充足的条件下,接种CC1192的鹰嘴豆植株生长速度高于M075,收获时积累的生物量也较高。在干旱条件下,CC1192与M075的茎部生长速率相当,收获时植物生物量和共生效率无显著差异。在不同的变异源中,植物生物量变化3.0倍,单株根瘤变化3.9倍,根瘤干重变化3.0倍,共生效率变化1.5倍,类细菌大小变化1.4倍,类细菌聚羟基丁酸变化1.4倍。在水分充足的条件下,植物生物量与类菌体大小和对聚羟基丁酸盐的分配呈负相关,表明植物和根瘤菌的适应性之间存在权衡。这项研究表明需要重新评估根瘤菌菌株在不同环境中的有效性,认识到它们与寄主植物相互作用的动态性质。
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引用次数: 0
Endogenous H2S promotes Arabidopsis flowering through the regulation of GA20ox4 in the gibberellin pathway.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70084
Lijuan Xuan, Yongke Tian, Xiaoyan Chen, Le Gao, Meng Wang, Haijun Wu

Flowering time is a critical determinant of plant reproductive success and agricultural yield. Hydrogen sulfide (H₂S), as a signaling molecule, regulates various aspects of plant growth and development. In this study, we examined the role of endogenous H₂S in regulating flowering time in Arabidopsis. The O-acetylserine thiol lyase a1 (oasa1) mutant, which has elevated H₂S levels due to impaired OASA1 activity that catalyzes the synthesis of Cys from H2S, flowers earlier than wild type (WT). The OASA1 overexpression lines (OE-OASA1-#33/#142), characterized by reduced H₂S levels, show delayed flowering, accompanied by decreased expression of key flowering regulators, FLOWERING LOCUS T (FT), SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 (SOC1), and AGAMOUS-LIKE24 (AGL24). Notably, vernalization and short-day (SD) conditions did not affect their flowering patterns. Exogenous H₂S and GA₃ treatment rescued the delayed flowering phenotype of OE-OASA1-#33/#142. In oasa1, levels of GA intermediates (GA15 and GA53) were elevated, while their levels were reduced in OE-OASA1-#33/#142. RT-qPCR analysis showed a significant reduction in the expression of GIBBERELLIN 20-OXIDASE 4 (GA20ox4) in OE-OASA1-#33/#142 compared to WT. Overexpression of GA20ox4 (OE-GA20ox4-#20/#30) resulted in earlier flowering and partially rescued the delayed flowering phenotype of OE-OASA1-#33/#142. Additionally, the expression of age pathway-related genes, including miRNA172b and SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3/4/5/9/15 (SPL3/4/5/9/15), was significantly reduced in OE-OASA1-#33/#142 seedlings. These findings suggest that endogenous H₂S positively regulates GA20ox4 expression, thereby promoting gibberellin synthesis and advancing flowering in Arabidopsis through the GA pathway. Furthermore, the promotion of flowering by H₂S appears to be linked to the age pathway.

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引用次数: 0
Ectopic expression of LONELY GUY7 in epidermis of internodal segments for de novo shoot regeneration without phytohormone treatment in ipecac. 在根茎节间节段表皮中LONELY GUY7的异位表达对根茎再生的影响。
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70023
Karin Okazaki, Wataru Katano, Kyomi Shibata, Masashi Asahina, Kazuko Koshiba-Takeuchi, Koichiro Shimomura, Mikihisa Umehara

In many plant species, the application of exogenous phytohormones is crucial for initiating de novo shoot regeneration. However, ipecac [Carapichea ipecacuanha (Brot) L. Andersson] has a unique ability to develop adventitious shoots on the epidermis of internodal segments without phytohormone treatment. This characteristic allows us to evaluate the effects of endogenous phytohormones in this species. Here, we showed that the presence of the pith, including vascular bundles in the internodal segment, is required to activate both endogenous cytokinin (CK) biosynthesis and adventitious shoot formation. Adventitious shoots were mainly formed in the apical region of internodal segments, where the CK biosynthesis genes ISOPENTENYL TRANSFERASE 3 (CiIPT3) and LONELY GUY 7 (CiLOG7) were spontaneously upregulated in the early culture stage on phytohormone-free medium. In addition, CiIPT3 and CiLOG7 were respectively expressed in the pith and the epidermis of the internodal segments. The expression of CiLOG7 was localized as several spots on the epidermis. These findings suggest that CK precursors are generated in the pith, transferred to the epidermis, and then converted into active CKs, facilitating adventitious shoot formation on the epidermis. Conversely, auxin levels rapidly decreased during culture and remained low in the region of shoot formation. Auxin is transferred to the basal region of internodal segments, and strongly suppressed the CiLOG7 expression and decreased the CK levels. Thus, we conclude that the ectopic expression of CiLOG7 in the epidermis of internodal segments contributes to de novo shoot regeneration in ipecac.

在许多植物物种中,外源植物激素的应用是启动新生芽再生的关键。然而,根根[Carapichea ipecacuanha (Brot) L. Andersson]在没有植物激素处理的情况下具有在节间节表皮上发育不定芽的独特能力。这一特性使我们能够评估内源植物激素对该物种的影响。在这里,我们发现髓的存在,包括节间节的维管束,是激活内源性细胞分裂素(CK)生物合成和不定芽形成所必需的。不定芽主要在节间节的顶端区域形成,CK生物合成基因异opentenyl TRANSFERASE 3 (CiIPT3)和LONELY GUY 7 (CiLOG7)在培养早期在无激素培养基上自发上调。此外,CiIPT3和CiLOG7分别在节间节的髓和表皮表达。CiLOG7的表达定位于表皮上的几个点。这些结果表明,CK前体在髓中产生,转移到表皮,然后转化为活性CK,促进表皮上的不定根形成。相反,生长素水平在培养过程中迅速下降,并在芽形成区域保持较低水平。生长素转移到结间节基底区,强烈抑制CiLOG7的表达,降低CK水平。因此,我们得出结论,在根茎节段表皮中,CiLOG7的异位表达有助于根茎新生。
{"title":"Ectopic expression of LONELY GUY7 in epidermis of internodal segments for de novo shoot regeneration without phytohormone treatment in ipecac.","authors":"Karin Okazaki, Wataru Katano, Kyomi Shibata, Masashi Asahina, Kazuko Koshiba-Takeuchi, Koichiro Shimomura, Mikihisa Umehara","doi":"10.1111/ppl.70023","DOIUrl":"10.1111/ppl.70023","url":null,"abstract":"<p><p>In many plant species, the application of exogenous phytohormones is crucial for initiating de novo shoot regeneration. However, ipecac [Carapichea ipecacuanha (Brot) L. Andersson] has a unique ability to develop adventitious shoots on the epidermis of internodal segments without phytohormone treatment. This characteristic allows us to evaluate the effects of endogenous phytohormones in this species. Here, we showed that the presence of the pith, including vascular bundles in the internodal segment, is required to activate both endogenous cytokinin (CK) biosynthesis and adventitious shoot formation. Adventitious shoots were mainly formed in the apical region of internodal segments, where the CK biosynthesis genes ISOPENTENYL TRANSFERASE 3 (CiIPT3) and LONELY GUY 7 (CiLOG7) were spontaneously upregulated in the early culture stage on phytohormone-free medium. In addition, CiIPT3 and CiLOG7 were respectively expressed in the pith and the epidermis of the internodal segments. The expression of CiLOG7 was localized as several spots on the epidermis. These findings suggest that CK precursors are generated in the pith, transferred to the epidermis, and then converted into active CKs, facilitating adventitious shoot formation on the epidermis. Conversely, auxin levels rapidly decreased during culture and remained low in the region of shoot formation. Auxin is transferred to the basal region of internodal segments, and strongly suppressed the CiLOG7 expression and decreased the CK levels. Thus, we conclude that the ectopic expression of CiLOG7 in the epidermis of internodal segments contributes to de novo shoot regeneration in ipecac.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70023"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11670440/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gibberellin regulates the synthesis of stone cells in 'Nanguo' pear via the PuMYB91-PuERF023 module.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70074
Mingyang Xu, Shan He, He Zhang, Siyang Gao, Mingxin Yin, Xinyue Li, Guodong Du

Stone cells are one of the limiting factors affecting pear fruit quality and commodity value. The formation of stone cell is highly correlated with lignin deposition. However, the molecular mechanism of stone cell formation and regulation is still unclear. Here, we observed that exogenous application of GA significantly inhibited the formation of stone cells and also decreased the content of lignin in 'Nanguo' (Pyrus ussuriensis) pear fruits. The key gene PuPRX73 involved in the lignin synthesis pathway was further identified using RT-PCR, and GA-treatment significantly inhibited the expression of PuPRX73. Overexpression or silencing of PuPRX73 in pear fruits significantly increases or decreases the content of stone cells and lignin. We identified the transcription factors PuMYB91 and PuERF023 using mRNA-seq and their expression was significantly decreased after GA-treatment. Transient overexpression of PuMYB91 and PuERF023 promotes lignin and stone cells content in pear fruits, while silencing of PuMYB91 and PuERF023 led to the opposite results and inhibited the expression of PuPRX73. Yeast one-hybrid (Y1H) and GUS activity analysis revealed that PuMYB91 and PuERF023 directly bind and activate the PuPRX73 promoter, and co-transfection of PuMYB91 and PuERF023 in Nicotiana benthamiana leaves further promoted the promoter activity of PuPRX73. Furthermore, we found that PuMYB91 interacted with PuERF023 in vitro by using Yeast two-hybrid assays (Y2H). In conclusion, our results revealed that exogenous GA-treatment inhibits stone cell production by suppressing the expression of PuMYB91 and PuERF023 in pear fruits.

{"title":"Gibberellin regulates the synthesis of stone cells in 'Nanguo' pear via the PuMYB91-PuERF023 module.","authors":"Mingyang Xu, Shan He, He Zhang, Siyang Gao, Mingxin Yin, Xinyue Li, Guodong Du","doi":"10.1111/ppl.70074","DOIUrl":"https://doi.org/10.1111/ppl.70074","url":null,"abstract":"<p><p>Stone cells are one of the limiting factors affecting pear fruit quality and commodity value. The formation of stone cell is highly correlated with lignin deposition. However, the molecular mechanism of stone cell formation and regulation is still unclear. Here, we observed that exogenous application of GA significantly inhibited the formation of stone cells and also decreased the content of lignin in 'Nanguo' (Pyrus ussuriensis) pear fruits. The key gene PuPRX73 involved in the lignin synthesis pathway was further identified using RT-PCR, and GA-treatment significantly inhibited the expression of PuPRX73. Overexpression or silencing of PuPRX73 in pear fruits significantly increases or decreases the content of stone cells and lignin. We identified the transcription factors PuMYB91 and PuERF023 using mRNA-seq and their expression was significantly decreased after GA-treatment. Transient overexpression of PuMYB91 and PuERF023 promotes lignin and stone cells content in pear fruits, while silencing of PuMYB91 and PuERF023 led to the opposite results and inhibited the expression of PuPRX73. Yeast one-hybrid (Y1H) and GUS activity analysis revealed that PuMYB91 and PuERF023 directly bind and activate the PuPRX73 promoter, and co-transfection of PuMYB91 and PuERF023 in Nicotiana benthamiana leaves further promoted the promoter activity of PuPRX73. Furthermore, we found that PuMYB91 interacted with PuERF023 in vitro by using Yeast two-hybrid assays (Y2H). In conclusion, our results revealed that exogenous GA-treatment inhibits stone cell production by suppressing the expression of PuMYB91 and PuERF023 in pear fruits.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70074"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143033623","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unravelling OsPHT2;1 function in Chloroplast Phosphorus Homeostasis and Photosynthetic Efficiency under Low Phosphorus Stress in Rice.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70082
Shanshan Lu, Xiaoming Xu, Yongzhen Wu, Jun Ye, Linyan Wu, Miaomiao Nie, Shubin Sun, Wen Jing, Hui-Kyong Cho, Hatem Rouached, Luqing Zheng

Phosphorus (P) deficiency is a critical factor limiting crop productivity, primarily due to its detrimental effects on photosynthesis and dry matter accumulation. In this study, we investigate the role of the rice gene OsPHT2;1 in mediating chloroplast P homeostasis and its subsequent impact on photosynthetic function under low P conditions. Stomatal conductance is typically positively correlated with net photosynthetic rates; however, P deficiency disrupts this relationship, leading to reduced stomatal opening and diminished photosynthetic efficiency. Our findings show that the OsPHT2;1 mutation leads to a decrease in the plastoquinone (PQ) pool size. This change is associated with altered stomatal conductance and modifications in electron transport dynamics, including an increase in the transmembrane proton gradient and a shift from linear to cyclic electron transport. This disruption significantly impairs the transport of photosynthetic products, particularly triose phosphates, essential for sucrose synthesis in the cytoplasm. Additionally, the reduced PQ pool influences the expression of key genes involved in photostability, highlighting the interplay between P homeostasis and photosynthetic regulation. By elucidating the mechanisms underlying OsPHT2;1's role in chloroplast function, our research underscores its significance in optimizing rice adaptation to low P environments, thereby enhancing crop resilience and productivity.

{"title":"Unravelling OsPHT2;1 function in Chloroplast Phosphorus Homeostasis and Photosynthetic Efficiency under Low Phosphorus Stress in Rice.","authors":"Shanshan Lu, Xiaoming Xu, Yongzhen Wu, Jun Ye, Linyan Wu, Miaomiao Nie, Shubin Sun, Wen Jing, Hui-Kyong Cho, Hatem Rouached, Luqing Zheng","doi":"10.1111/ppl.70082","DOIUrl":"https://doi.org/10.1111/ppl.70082","url":null,"abstract":"<p><p>Phosphorus (P) deficiency is a critical factor limiting crop productivity, primarily due to its detrimental effects on photosynthesis and dry matter accumulation. In this study, we investigate the role of the rice gene OsPHT2;1 in mediating chloroplast P homeostasis and its subsequent impact on photosynthetic function under low P conditions. Stomatal conductance is typically positively correlated with net photosynthetic rates; however, P deficiency disrupts this relationship, leading to reduced stomatal opening and diminished photosynthetic efficiency. Our findings show that the OsPHT2;1 mutation leads to a decrease in the plastoquinone (PQ) pool size. This change is associated with altered stomatal conductance and modifications in electron transport dynamics, including an increase in the transmembrane proton gradient and a shift from linear to cyclic electron transport. This disruption significantly impairs the transport of photosynthetic products, particularly triose phosphates, essential for sucrose synthesis in the cytoplasm. Additionally, the reduced PQ pool influences the expression of key genes involved in photostability, highlighting the interplay between P homeostasis and photosynthetic regulation. By elucidating the mechanisms underlying OsPHT2;1's role in chloroplast function, our research underscores its significance in optimizing rice adaptation to low P environments, thereby enhancing crop resilience and productivity.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70082"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MoCloro: an extension of the Chlamydomonas reinhardtii modular cloning toolkit for microalgal chloroplast engineering.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70088
Xavier Melero-Cobo, Marçal Gallemí, Marc Carnicer, Elena Monte, Antoni Planas, Pablo Leivar

Photosynthetic microalgae are promising green cell factories for the sustainable production of high-value chemicals and biopharmaceuticals. The chloroplast organelle is being developed as a chassis for synthetic biology as it contains its own genome (the plastome) and some interesting advantages, such as high recombinant protein titers and a diverse and dynamic metabolism. However, chloroplast engineering is currently hampered by the lack of standardized cloning tools and Design-Build-Test-Learn workflows to ease genomic and metabolic engineering. The MoClo (Modular Cloning) toolkit based on Golden Gate assembly was recently developed in the model eukaryotic green microalgae Chlamydomonas reinhardtii to facilitate nuclear transformation and engineering. Here, we present MoCloro as an extension of the MoClo that allows chloroplast genome engineering. Briefly, a Golden Gate-compatible chloroplast transformation vector (pWF.K.4) was constructed, which contains homologous arms for integration at the petA site in the plastome. A collection of standardized parts (promoters, terminators, reporter and selection marker genes) was created following the MoClo syntax to enable easy combinatorial assembly of multi-cassettes in the destination pWF.K.4 vector. The functionality of the biobricks was assayed by constructing and assessing the expression of several multigenic constructs. Finally, a generic vector pK4 was constructed for easy Golden Gate cloning of 5' and 3' homologous arms, allowing targeting at alternative plastome integration sites. This work represents a significant advancement in technology aimed at facilitating more efficient and rapid chloroplast transformation and engineering of green microalgae.

{"title":"MoCloro: an extension of the Chlamydomonas reinhardtii modular cloning toolkit for microalgal chloroplast engineering.","authors":"Xavier Melero-Cobo, Marçal Gallemí, Marc Carnicer, Elena Monte, Antoni Planas, Pablo Leivar","doi":"10.1111/ppl.70088","DOIUrl":"10.1111/ppl.70088","url":null,"abstract":"<p><p>Photosynthetic microalgae are promising green cell factories for the sustainable production of high-value chemicals and biopharmaceuticals. The chloroplast organelle is being developed as a chassis for synthetic biology as it contains its own genome (the plastome) and some interesting advantages, such as high recombinant protein titers and a diverse and dynamic metabolism. However, chloroplast engineering is currently hampered by the lack of standardized cloning tools and Design-Build-Test-Learn workflows to ease genomic and metabolic engineering. The MoClo (Modular Cloning) toolkit based on Golden Gate assembly was recently developed in the model eukaryotic green microalgae Chlamydomonas reinhardtii to facilitate nuclear transformation and engineering. Here, we present MoCloro as an extension of the MoClo that allows chloroplast genome engineering. Briefly, a Golden Gate-compatible chloroplast transformation vector (pWF.K.4) was constructed, which contains homologous arms for integration at the petA site in the plastome. A collection of standardized parts (promoters, terminators, reporter and selection marker genes) was created following the MoClo syntax to enable easy combinatorial assembly of multi-cassettes in the destination pWF.K.4 vector. The functionality of the biobricks was assayed by constructing and assessing the expression of several multigenic constructs. Finally, a generic vector pK4 was constructed for easy Golden Gate cloning of 5' and 3' homologous arms, allowing targeting at alternative plastome integration sites. This work represents a significant advancement in technology aimed at facilitating more efficient and rapid chloroplast transformation and engineering of green microalgae.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70088"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11772913/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143053253","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of novel inhibitors of plant GH3 IAA-amido synthetases through molecular docking studies. 通过分子对接研究鉴定植物 GH3 IAA-氨基合成酶的新型抑制剂。
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-11-01 DOI: 10.1111/ppl.14612
Adrián Luque, Clara Blanes-Mira, Lara Caballero, Purificación Andrea Martínez-Melgarejo, Miriam Nicolás-Albujer, Francisco Pérez-Alfocea, Gregorio Fernández-Ballester, José Manuel Pérez-Pérez

Auxins play a critical role in several plant developmental processes and their endogenous levels are regulated at multiple levels. The enzymes of the GRETCHEN HAGEN 3 (GH3) protein family catalyze the conjugation of amino acids to indoleacetic acid (IAA), the major endogenous auxin. The GH3 proteins are encoded by multiple redundant genes in plant genomes, making it difficult to perform functional genetic studies to understand their role in auxin homeostasis. To address these challenges, we used a chemical approach that exploits the reaction mechanism of GH3 proteins to identify small molecule inhibitors of their activity from a defined chemical library. The study evaluated receptor-ligand complexes based on their binding energy and classified them accordingly. Docking algorithms were used to correct any deviations, resulting in a list of the most important inhibitory compounds for selected GH3 enzymes based on a normalized sum of energy. The study presents atomic details of protein-ligand interactions and quantifies the effect of several of the identified small molecule inhibitors on auxin-mediated root growth processes in Arabidopsis thaliana. The direct effect of these compounds on endogenous auxin levels was measured using appropriate auxin sensors and endogenous hormone measurements. Our study has identified novel compounds of the flavonoid biosynthetic pathway that are effective inhibitors of GH3 enzyme-mediated IAA conjugation. These compounds play a versatile role in hormone-regulated plant development and have potential applications in both basic research and agriculture.

辅酶在多种植物发育过程中发挥着关键作用,其内源水平受到多层次的调控。GRETCHEN HAGEN 3(GH3)蛋白家族的酶催化氨基酸与吲哚乙酸(IAA)(主要的内源辅助素)的共轭。GH3 蛋白在植物基因组中由多个冗余基因编码,因此很难进行功能基因研究以了解它们在辅助素平衡中的作用。为了应对这些挑战,我们采用了一种化学方法,利用 GH3 蛋白的反应机制,从一个确定的化学库中找出抑制其活性的小分子抑制剂。该研究根据受体与配体的结合能评估了受体与配体的复合物,并对它们进行了相应的分类。利用对接算法纠正任何偏差,最终根据能量的归一化总和,列出了对选定的 GH3 酶具有最重要抑制作用的化合物清单。该研究介绍了蛋白质-配体相互作用的原子细节,并量化了几种已确定的小分子抑制剂对拟南芥中辅酶介导的根生长过程的影响。这些化合物对内源植物生长素水平的直接影响是通过适当的植物生长素传感器和内源激素测量仪测得的。我们的研究发现了黄酮类生物合成途径中的新型化合物,它们是 GH3 酶介导的 IAA 共轭的有效抑制剂。这些化合物在激素调控的植物发育过程中发挥着多方面的作用,在基础研究和农业方面都有潜在的应用前景。
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引用次数: 0
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Physiologia plantarum
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