Background: Intimate partner violence (IPV) has dire health consequences. To intervene, it is critical we first understand why young men perpetrate IPV. One theory is that men who experience violence are more likely to perpetrate violence. We used real time data to examine how daily and repeat experiences of violence affect IPV behaviors.
Methods: We enrolled 498 males aged 15-19 years in Soweto, South Africa during 2020-2022. We collected data through weekly mobile phone surveys (n = 12,603) delivered over a year. Generalized linear mixed effect models were used to fit IPV perpetration as a function of past-24-hour violence victimization; models included indicators for between-person and within-person components of victimization.
Findings: In at least one survey submitted, 13% of boys reported perpetrating physical IPV and 5% perpetrating sexual IPV. Any victimization in the past 24-hours significantly increased the odds of physical (OR 4.00) and sexual violence perpetration (OR 2.45). When examined individually, sexual violence victimization had the strongest association (OR of 7.96 for physical and 4.88 sexual IPV perpetration). We also examined the between-person influence of victimization. Boys who experienced more violence on average (a higher person-centered mean exposure) were substantially more likely to perpetrate both physical IPV and sexual IPV as compared to boys with overall low levels of victimization.
Conclusion: Adolescent boys who experience violence are more likely to use violence against their partners that same day. To break this cycle, it will be critical to understand the mechanisms by which proximal victimization triggers onward violence perpetration. Both the current findings and the next steps highlight the importance of real-time, repeated data collection.
{"title":"Measuring real-time violence exposure and its impact on intimate partner violence perpetration among adolescents.","authors":"Rachel Kidman, Janan Janine Dietrich, Xiaoyue Zhang, Candice W Ramsammy, Phumla Madi, Stefanie Vermaak, Buisiwe Nkala-Dlamini, Avy Violari","doi":"10.1371/journal.pone.0318063","DOIUrl":"https://doi.org/10.1371/journal.pone.0318063","url":null,"abstract":"<p><strong>Background: </strong>Intimate partner violence (IPV) has dire health consequences. To intervene, it is critical we first understand why young men perpetrate IPV. One theory is that men who experience violence are more likely to perpetrate violence. We used real time data to examine how daily and repeat experiences of violence affect IPV behaviors.</p><p><strong>Methods: </strong>We enrolled 498 males aged 15-19 years in Soweto, South Africa during 2020-2022. We collected data through weekly mobile phone surveys (n = 12,603) delivered over a year. Generalized linear mixed effect models were used to fit IPV perpetration as a function of past-24-hour violence victimization; models included indicators for between-person and within-person components of victimization.</p><p><strong>Findings: </strong>In at least one survey submitted, 13% of boys reported perpetrating physical IPV and 5% perpetrating sexual IPV. Any victimization in the past 24-hours significantly increased the odds of physical (OR 4.00) and sexual violence perpetration (OR 2.45). When examined individually, sexual violence victimization had the strongest association (OR of 7.96 for physical and 4.88 sexual IPV perpetration). We also examined the between-person influence of victimization. Boys who experienced more violence on average (a higher person-centered mean exposure) were substantially more likely to perpetrate both physical IPV and sexual IPV as compared to boys with overall low levels of victimization.</p><p><strong>Conclusion: </strong>Adolescent boys who experience violence are more likely to use violence against their partners that same day. To break this cycle, it will be critical to understand the mechanisms by which proximal victimization triggers onward violence perpetration. Both the current findings and the next steps highlight the importance of real-time, repeated data collection.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0318063"},"PeriodicalIF":2.9,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143616842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aims: The aim of this study was to ascertain whether there has been an increase in the number of workers with long-term sickness absence due to mental disorders (LTSA-MD) and determine the impact of remote work on new LTSA-MD cases.
Methods: A web-based questionnaire was sent to 2,552 company offices with 150 or more workers in Osaka Prefecture. Data were obtained on the number of workers with LTSA-MD between April 1, 2019, and March 31, 2020 (fiscal year 2019) and between April 1, 2020, and March 31, 2021 (fiscal year 2020), along with their MD diagnoses (adjustment disorder [AD], depressive disorder [DEP], etc.). The difference in the number of new LTSA-MD, LTSA-AD, and LTSA-DEP cases between the fiscal years was evaluated, as well as the number of LTSA-MD cases per 100 employees. An independent t-test was used to compare the groups.
Results: DEP was the most prevalent condition, followed by AD. The number of workers with LTSA-MD nominally decreased from fiscal 2019 to fiscal year 2020, with no significant difference. There were no significant differences between fiscal year 2020 and fiscal year 2019 regarding LTSA-MD, LTSA-AD, and LTSA-DEP in offices with and without a remote work model.
Conclusions: The number of non-public workers with LTSA-MD did not increase during the COVID-19 pandemic, with no significant difference observed between offices with and without a remote work model. This provides preliminary evidence of a potential protective effect of remote work against LTSA-DEP.
{"title":"Remote work and long-term sickness absence due to mental disorder trends among Japanese workers pre/post COVID-19.","authors":"Yasuhiko Deguchi, Shinichi Iwasaki, Yuki Uesaka, Yutaro Okawa, Shohei Okura, Kunio Maekubo, Ayaka Matsunaga, Yuki Kageyama, Koki Inoue","doi":"10.1371/journal.pone.0319825","DOIUrl":"https://doi.org/10.1371/journal.pone.0319825","url":null,"abstract":"<p><strong>Aims: </strong>The aim of this study was to ascertain whether there has been an increase in the number of workers with long-term sickness absence due to mental disorders (LTSA-MD) and determine the impact of remote work on new LTSA-MD cases.</p><p><strong>Methods: </strong>A web-based questionnaire was sent to 2,552 company offices with 150 or more workers in Osaka Prefecture. Data were obtained on the number of workers with LTSA-MD between April 1, 2019, and March 31, 2020 (fiscal year 2019) and between April 1, 2020, and March 31, 2021 (fiscal year 2020), along with their MD diagnoses (adjustment disorder [AD], depressive disorder [DEP], etc.). The difference in the number of new LTSA-MD, LTSA-AD, and LTSA-DEP cases between the fiscal years was evaluated, as well as the number of LTSA-MD cases per 100 employees. An independent t-test was used to compare the groups.</p><p><strong>Results: </strong>DEP was the most prevalent condition, followed by AD. The number of workers with LTSA-MD nominally decreased from fiscal 2019 to fiscal year 2020, with no significant difference. There were no significant differences between fiscal year 2020 and fiscal year 2019 regarding LTSA-MD, LTSA-AD, and LTSA-DEP in offices with and without a remote work model.</p><p><strong>Conclusions: </strong>The number of non-public workers with LTSA-MD did not increase during the COVID-19 pandemic, with no significant difference observed between offices with and without a remote work model. This provides preliminary evidence of a potential protective effect of remote work against LTSA-DEP.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0319825"},"PeriodicalIF":2.9,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143616868","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12eCollection Date: 2025-01-01DOI: 10.1371/journal.pone.0318179
Xia Zhu-Barker, Michael Liou, Diana Zapata, Jingyi Huang, William R Horwath
Organic agriculture is expanding worldwide, driven by expectations of improving food quality and soil health. However, while organic certification by regulatory bodies such as the United States Department of Agriculture and the European Union confirms compliance with organic standards that prohibit synthetic chemical inputs, there is limited oversight to verify that organic practices, such as the use of authentic organic fertilizer sources, are consistently applied at the field level. This study investigated the elemental content of carbon (C) and nitrogen (N) and their stable isotopes (δ13C and δ15N) in seven different crops grown under organic or conventional practices to assess their applicability as a screening tool to verify the authenticity of organic labeled produce. Holm corrected Welch t-tests and a generalized linear mixed model (GLMM) were used to assess the potential of stable isotope or crop elemental content to differentiate organic vs. conventional production systems. Total C and N content or C/N ratio was not significantly different between production systems or among geographic origins for most crops. However, the average N stable isotope (δ15N) content differed, with conventional crops at 1.8 ± 2.2‰ and organic at 6.0 ± 3.4‰. A mixed model incorporating elemental contents and stable isotopes identified δ15N as the primary predictor in discriminating organic and conventional production systems. A δ15N threshold is suggested to differentiate conventional from organic grown raspberries (δ15N < 2.17‰) and strawberries (δ15N < 3.22‰), for an estimated false negative rate of 1%. Although further evaluation is needed, our extensive dataset (n = 791) captures key predictors of agricultural production systems and holds potential as a benchmark for future organic production verification.
{"title":"Stable isotopes as a predictor for organic or conventional classification of berries and vegetables.","authors":"Xia Zhu-Barker, Michael Liou, Diana Zapata, Jingyi Huang, William R Horwath","doi":"10.1371/journal.pone.0318179","DOIUrl":"https://doi.org/10.1371/journal.pone.0318179","url":null,"abstract":"<p><p>Organic agriculture is expanding worldwide, driven by expectations of improving food quality and soil health. However, while organic certification by regulatory bodies such as the United States Department of Agriculture and the European Union confirms compliance with organic standards that prohibit synthetic chemical inputs, there is limited oversight to verify that organic practices, such as the use of authentic organic fertilizer sources, are consistently applied at the field level. This study investigated the elemental content of carbon (C) and nitrogen (N) and their stable isotopes (δ13C and δ15N) in seven different crops grown under organic or conventional practices to assess their applicability as a screening tool to verify the authenticity of organic labeled produce. Holm corrected Welch t-tests and a generalized linear mixed model (GLMM) were used to assess the potential of stable isotope or crop elemental content to differentiate organic vs. conventional production systems. Total C and N content or C/N ratio was not significantly different between production systems or among geographic origins for most crops. However, the average N stable isotope (δ15N) content differed, with conventional crops at 1.8 ± 2.2‰ and organic at 6.0 ± 3.4‰. A mixed model incorporating elemental contents and stable isotopes identified δ15N as the primary predictor in discriminating organic and conventional production systems. A δ15N threshold is suggested to differentiate conventional from organic grown raspberries (δ15N < 2.17‰) and strawberries (δ15N < 3.22‰), for an estimated false negative rate of 1%. Although further evaluation is needed, our extensive dataset (n = 791) captures key predictors of agricultural production systems and holds potential as a benchmark for future organic production verification.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0318179"},"PeriodicalIF":2.9,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143616877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Stress negatively impacts university students, leading to adverse outcomes. While canine-assisted intervention (CAI) has been shown to reduce self-reported stress, no studies have investigated stress levels and associated biomarkers in dogs and students simultaneously. This study examined salivary cortisol, blood pressure, and pulse rate in 122 university students experiencing self-reported moderate to high stress before an encounter with a dog (T1), immediately before meeting a dog (T2), and after spending 15 minutes interacting with a dog (T3). Participants assessed their stress level using a visual analog scale, and blood pressure and pulse rate were measured at three time points. Salivary cortisol was also measured at T1 and T3. Six privately owned dogs, all in good health and comfortable with strangers, participated in the intervention sessions. Salivary and fecal cortisol samples from the dogs were collected in the morning before commencing activities, at noon, and in the evening after human interactions ended. The results showed that the expectation of interacting with dogs reduces self-reported stress, pulse rate, and salivary cortisol, which remained significantly lower after the interaction. Salivary cortisol concentrations in dogs did not differ throughout the day. By contrast, fecal glucocorticoid metabolite concentrations during the week dogs interacted with students were higher (P = 0.0012) than those during the week post-experiment, which, based on behavior, appeared to indicate positive stimulation. These findings highlight the potential of integrating CAI into university stress management programs. Future research could explore extending these benefits to community dogs, long-term effects, and enhancing accessibility to this form of stress relief.
{"title":"The impact of canine-assisted intervention on stress reduction among university students in Thailand.","authors":"Saengduean Yotanyamaneewong, Daranee Junla, Janine L Brown, Nathida Siriapaipant, Naruedee Yodkamol, Worapat Prachasilchai, Adul Saengthong, Pratch Sanguansak, Thanapun Kankonsue, Veerasak Punyapornwithaya, Chalutwan Sansamur, Korakot Nganvongpanit, Jaruwan Khonmee","doi":"10.1371/journal.pone.0318777","DOIUrl":"https://doi.org/10.1371/journal.pone.0318777","url":null,"abstract":"<p><p>Stress negatively impacts university students, leading to adverse outcomes. While canine-assisted intervention (CAI) has been shown to reduce self-reported stress, no studies have investigated stress levels and associated biomarkers in dogs and students simultaneously. This study examined salivary cortisol, blood pressure, and pulse rate in 122 university students experiencing self-reported moderate to high stress before an encounter with a dog (T1), immediately before meeting a dog (T2), and after spending 15 minutes interacting with a dog (T3). Participants assessed their stress level using a visual analog scale, and blood pressure and pulse rate were measured at three time points. Salivary cortisol was also measured at T1 and T3. Six privately owned dogs, all in good health and comfortable with strangers, participated in the intervention sessions. Salivary and fecal cortisol samples from the dogs were collected in the morning before commencing activities, at noon, and in the evening after human interactions ended. The results showed that the expectation of interacting with dogs reduces self-reported stress, pulse rate, and salivary cortisol, which remained significantly lower after the interaction. Salivary cortisol concentrations in dogs did not differ throughout the day. By contrast, fecal glucocorticoid metabolite concentrations during the week dogs interacted with students were higher (P = 0.0012) than those during the week post-experiment, which, based on behavior, appeared to indicate positive stimulation. These findings highlight the potential of integrating CAI into university stress management programs. Future research could explore extending these benefits to community dogs, long-term effects, and enhancing accessibility to this form of stress relief.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0318777"},"PeriodicalIF":2.9,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143616700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12eCollection Date: 2025-01-01DOI: 10.1371/journal.pone.0318106
Mark D Geil
Despite its importance in the development of mobility in infants, there is a general lack of quantified data on infant crawling, and a specific lack of understanding of crawling kinetics, which includes the relative weightbearing and force generation among the four limbs. Moreover, because of the difficulty of measurement and study design, there is no longitudinal quantification of the impact of a perturbation to typical development, such as limb immobilization. This study measured kinetic and spatiotemporal outcomes in a typically developing infant prior to a fracture that necessitated a long-leg cast that immobilized the left knee and ankle, while crawling with the cast, and again one day after cast removal, and two weeks post. The study utilized a pressure-sensing mat to generate outcomes. Crawling in the cast resulted in a 37% decrease in speed, a shift of weight toward the arms (toward the right arm in particular), and a shift from double and quadruple limb support toward triple limb support. Upon removal of the cast, the unweighting and limb support patterns persisted, while speed recovered and actually exceeded baseline. Triple limb support was 12% at baseline, 28% in the cast, and 32% immediately following cast removal. Two weeks later, the value had dropped back to 17%, while speed continued to increase following a linear trend vs. age. These data provide insight into an infant's ability to reorganize crawling kinematics, and the persistence of that reorganization following remobilization.
{"title":"Impact of a three-week full leg cast immobilization on infant crawling kinetics and spatiotemporal parameters.","authors":"Mark D Geil","doi":"10.1371/journal.pone.0318106","DOIUrl":"https://doi.org/10.1371/journal.pone.0318106","url":null,"abstract":"<p><p>Despite its importance in the development of mobility in infants, there is a general lack of quantified data on infant crawling, and a specific lack of understanding of crawling kinetics, which includes the relative weightbearing and force generation among the four limbs. Moreover, because of the difficulty of measurement and study design, there is no longitudinal quantification of the impact of a perturbation to typical development, such as limb immobilization. This study measured kinetic and spatiotemporal outcomes in a typically developing infant prior to a fracture that necessitated a long-leg cast that immobilized the left knee and ankle, while crawling with the cast, and again one day after cast removal, and two weeks post. The study utilized a pressure-sensing mat to generate outcomes. Crawling in the cast resulted in a 37% decrease in speed, a shift of weight toward the arms (toward the right arm in particular), and a shift from double and quadruple limb support toward triple limb support. Upon removal of the cast, the unweighting and limb support patterns persisted, while speed recovered and actually exceeded baseline. Triple limb support was 12% at baseline, 28% in the cast, and 32% immediately following cast removal. Two weeks later, the value had dropped back to 17%, while speed continued to increase following a linear trend vs. age. These data provide insight into an infant's ability to reorganize crawling kinematics, and the persistence of that reorganization following remobilization.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0318106"},"PeriodicalIF":2.9,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143616821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ferric carboxymaltose (FCM) is widely used to correct anemia and replenish iron stores rapidly, particularly in Western populations. However, lower doses of FCM are typically used in East Asia, with limited research on their effectiveness, especially in postpartum women. This randomized controlled trial aimed to assess the efficacy of low-dose FCM compared with oral ferrous sulfate in increasing postpartum hemoglobin (Hb) levels and replenishing iron stores in East Asian women. Sixty postpartum women with Hb levels < 10 g/dL and serum ferritin ≤ 30 ng/mL were randomized to receive either intravenous FCM (500 mg at baseline and 2 weeks) or oral ferrous sulfate (210 mg daily for 4 weeks). The primary outcome was the increase in Hb levels at 2 weeks post-enrollment. Secondary outcomes included serum ferritin, transferrin saturation, the Edinburgh Postnatal Depression Scale (EPDS) score, and adverse events at 4 weeks. The FCM group demonstrated a significantly greater increase in Hb levels at 2 weeks (mean difference 0.42 g/dL; 95% CI: 0.12-0.72; P = 0.006), with markedly higher ferritin (adjusted mean difference 356.0 ng/mL; 95% CI: 321.0-403.0; P < 0.001) and transferrin saturation (adjusted mean difference 10.76%; 95% CI: 4.20-17.31; P = 0.002) at 4 weeks. Although there was no significant difference in final Hb levels at 4 weeks (mean difference 0.36 g/dL; 95% CI: -0.01-0.72; P = 0.055), the FCM group had a lower median EPDS score (median difference -3.0; 95% CI: -5.0 to -1.0; P = 0.002) and fewer gastrointestinal side effects, including constipation and nausea. Hypophosphatemia occurred asymptomatically in three patients in the FCM group. These findings suggest that low-dose FCM infusion is highly effective in increasing Hb levels at 2 weeks post-enrollment, with fewer gastrointestinal side effects and higher ferritin levels observed at 4 weeks post-enrollment compared with oral ferrous sulfate. This study was registered at the UMIN Clinical Trials Registry, which meets the requirements of the ICMJE, on December 1, 2021 (ID: UMIN000046049).
{"title":"Low-dose ferric carboxymaltose vs. oral iron for improving hemoglobin levels in postpartum East Asian women: A randomized controlled trial.","authors":"Takeshi Nagao, Ken Takahashi, Sho Takahashi, Ryo Yokomizo, Osamu Samura, Aikou Okamoto","doi":"10.1371/journal.pone.0319795","DOIUrl":"https://doi.org/10.1371/journal.pone.0319795","url":null,"abstract":"<p><p>Ferric carboxymaltose (FCM) is widely used to correct anemia and replenish iron stores rapidly, particularly in Western populations. However, lower doses of FCM are typically used in East Asia, with limited research on their effectiveness, especially in postpartum women. This randomized controlled trial aimed to assess the efficacy of low-dose FCM compared with oral ferrous sulfate in increasing postpartum hemoglobin (Hb) levels and replenishing iron stores in East Asian women. Sixty postpartum women with Hb levels < 10 g/dL and serum ferritin ≤ 30 ng/mL were randomized to receive either intravenous FCM (500 mg at baseline and 2 weeks) or oral ferrous sulfate (210 mg daily for 4 weeks). The primary outcome was the increase in Hb levels at 2 weeks post-enrollment. Secondary outcomes included serum ferritin, transferrin saturation, the Edinburgh Postnatal Depression Scale (EPDS) score, and adverse events at 4 weeks. The FCM group demonstrated a significantly greater increase in Hb levels at 2 weeks (mean difference 0.42 g/dL; 95% CI: 0.12-0.72; P = 0.006), with markedly higher ferritin (adjusted mean difference 356.0 ng/mL; 95% CI: 321.0-403.0; P < 0.001) and transferrin saturation (adjusted mean difference 10.76%; 95% CI: 4.20-17.31; P = 0.002) at 4 weeks. Although there was no significant difference in final Hb levels at 4 weeks (mean difference 0.36 g/dL; 95% CI: -0.01-0.72; P = 0.055), the FCM group had a lower median EPDS score (median difference -3.0; 95% CI: -5.0 to -1.0; P = 0.002) and fewer gastrointestinal side effects, including constipation and nausea. Hypophosphatemia occurred asymptomatically in three patients in the FCM group. These findings suggest that low-dose FCM infusion is highly effective in increasing Hb levels at 2 weeks post-enrollment, with fewer gastrointestinal side effects and higher ferritin levels observed at 4 weeks post-enrollment compared with oral ferrous sulfate. This study was registered at the UMIN Clinical Trials Registry, which meets the requirements of the ICMJE, on December 1, 2021 (ID: UMIN000046049).</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0319795"},"PeriodicalIF":2.9,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143616833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
<p><strong>Objective: </strong>This study aims to investigate and analyze the differentially expressed genes (DEGs) in CD34 + hematopoietic stem cells (HSCs) from patients with myelodysplastic syndromes (MDS) through bioinformatics analysis, with the ultimate goal of uncovering the potential molecular mechanisms underlying pathogenesis of MDS. The findings of this study are expected to provide novel insights into clinical treatment strategies for MDS.</p><p><strong>Methods: </strong>Initially, we downloaded three datasets, GSE81173, GSE4619, and GSE58831, from the public Gene Expression Omnibus (GEO) database as our training sets, and selected the GSE19429 dataset as the validation set. To ensure data consistency and comparability, we standardized the training sets and removed batch effects using the ComBat algorithm, thereby integrating them into a unified gene expression dataset. Subsequently, we conducted differential expression analysis to identify genes with significant changes in expression levels across different disease states. In order to enhance prediction accuracy, we incorporated six common predictive models and trained them based on the filtered differential gene expression dataset. After comprehensive evaluation, we ultimately selected three algorithms-Lasso regression, random forest, and support vector machine (SVM)-as our core predictive models. To more precisely pinpoint genes closely related to disease characteristics, we utilized the aforementioned three machine learning methods for prediction and took the intersection of these prediction results, yielding a more robust list of genes associated with disease features. Following this, we conducted in-depth analysis of these key genes in the training set and validated the results independently using the GSE19429 dataset. Furthermore, we performed differential analysis of gene groups, co-expression analysis, and enrichment analysis to delve deeper into the mechanisms underlying the roles of these genes in disease initiation and progression. Through these analyses, we aim to provide new insights and foundations for disease diagnosis and treatment. Figure illustrates the data preprocessing and analysis workflow of this study.</p><p><strong>Results: </strong>Our analysis of differentially expressed genes (DEGs) in CD34+ hematopoietic stem cells (HSCs) from patients with myelodysplastic syndromes (MDS) revealed significant differences in gene expression patterns compared to the control group (individuals without MDS). Specifically, the expression levels of two key genes, IRF4 and ELANE, were notably downregulated in CD34+ HSCs of MDS patients, indicating their downregulatory roles in the pathological process of MDS.</p><p><strong>Conclusion: </strong>This study sheds light on the potential molecular mechanisms underlying MDS, with a particular focus on the pivotal roles of IRF4 and ELANE as key pathogenic genes. Our findings provide a novel perspective for understanding the complexity
{"title":"Research and analysis of differential gene expression in CD34 hematopoietic stem cells in myelodysplastic syndromes.","authors":"Min-Xiao Wang, Chang-Sheng Liao, Xue-Qin Wei, Yu-Qin Xie, Peng-Fei Han, Yan-Hui Yu","doi":"10.1371/journal.pone.0315408","DOIUrl":"https://doi.org/10.1371/journal.pone.0315408","url":null,"abstract":"<p><strong>Objective: </strong>This study aims to investigate and analyze the differentially expressed genes (DEGs) in CD34 + hematopoietic stem cells (HSCs) from patients with myelodysplastic syndromes (MDS) through bioinformatics analysis, with the ultimate goal of uncovering the potential molecular mechanisms underlying pathogenesis of MDS. The findings of this study are expected to provide novel insights into clinical treatment strategies for MDS.</p><p><strong>Methods: </strong>Initially, we downloaded three datasets, GSE81173, GSE4619, and GSE58831, from the public Gene Expression Omnibus (GEO) database as our training sets, and selected the GSE19429 dataset as the validation set. To ensure data consistency and comparability, we standardized the training sets and removed batch effects using the ComBat algorithm, thereby integrating them into a unified gene expression dataset. Subsequently, we conducted differential expression analysis to identify genes with significant changes in expression levels across different disease states. In order to enhance prediction accuracy, we incorporated six common predictive models and trained them based on the filtered differential gene expression dataset. After comprehensive evaluation, we ultimately selected three algorithms-Lasso regression, random forest, and support vector machine (SVM)-as our core predictive models. To more precisely pinpoint genes closely related to disease characteristics, we utilized the aforementioned three machine learning methods for prediction and took the intersection of these prediction results, yielding a more robust list of genes associated with disease features. Following this, we conducted in-depth analysis of these key genes in the training set and validated the results independently using the GSE19429 dataset. Furthermore, we performed differential analysis of gene groups, co-expression analysis, and enrichment analysis to delve deeper into the mechanisms underlying the roles of these genes in disease initiation and progression. Through these analyses, we aim to provide new insights and foundations for disease diagnosis and treatment. Figure illustrates the data preprocessing and analysis workflow of this study.</p><p><strong>Results: </strong>Our analysis of differentially expressed genes (DEGs) in CD34+ hematopoietic stem cells (HSCs) from patients with myelodysplastic syndromes (MDS) revealed significant differences in gene expression patterns compared to the control group (individuals without MDS). Specifically, the expression levels of two key genes, IRF4 and ELANE, were notably downregulated in CD34+ HSCs of MDS patients, indicating their downregulatory roles in the pathological process of MDS.</p><p><strong>Conclusion: </strong>This study sheds light on the potential molecular mechanisms underlying MDS, with a particular focus on the pivotal roles of IRF4 and ELANE as key pathogenic genes. Our findings provide a novel perspective for understanding the complexity ","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0315408"},"PeriodicalIF":2.9,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143616870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-11eCollection Date: 2025-01-01DOI: 10.1371/journal.pone.0317602
Ahmad Alsaber, Parul Setiya, Anurag Satpathi, Abrar Aljamaan, Jiazhu Pan
Pearl millet (Pennisetum glaucum L.) is a resilient crop known for its ability to thrive in arid and semi-arid regions, making it a crucial staple in regions prone to drought. Rajasthan, a state in India, emerged as the top producer of pearl millet. This study enhances yield forecasting for pearl millet using machine learning models across nine districts viz. Jaipur, Ajmer, Jodhpur, Bikaner, Bharatpur, Alwar, Sikar, Jhunjhunu and Nagaur in Rajasthan, India. Data from 1997-2019 (23 years), including yield data from the Directorate of Economics and Statistics and weather data from the NASA POWER web portal, were analysed. The study employed individual machine learning methods (GLM, ELNET, XGB, SVR and RF) and their ensemble combinations (GLM, ELNET, Cubist and RF). Discerning the overall best performing model across all locations remained challenging. For instance, while ensemble models exhibited subpar performance in Barmer and Nagaur, their performance ranged from satisfactory to commendable in other locations. To identify the best model, all models were ranked based on their R2 and nRMSE (%) values. Combined average ranks during training and testing revealed the model performance ranking as I-XGB (3.83) > I-GLM (4.28) > E-ELNET (4.32) > I-RF (4.67) > E-GLM (4.88) > I-SVR (4.90) > I-ELNET (4.94) > E-RF (6.03) > E-Cubist (7.15), where I denotes individual model, while E denotes ensemble model. Intriguingly, while individual GLM and XGB models demonstrated superior performance during calibration, they exhibited poorer performance during validation, potentially indicating issues of data overfitting. Hence, the ensemble ELNET approach is recommended for accurate prediction of pearl millet yield, followed by the individual RF model. These performances underscore the importance of tailored model selection based on specific geographic and environmental conditions.
{"title":"Advancing pearl millet yield forecasting: Comparative analysis of individual and ensemble machine learning approaches over Rajasthan, India.","authors":"Ahmad Alsaber, Parul Setiya, Anurag Satpathi, Abrar Aljamaan, Jiazhu Pan","doi":"10.1371/journal.pone.0317602","DOIUrl":"https://doi.org/10.1371/journal.pone.0317602","url":null,"abstract":"<p><p>Pearl millet (Pennisetum glaucum L.) is a resilient crop known for its ability to thrive in arid and semi-arid regions, making it a crucial staple in regions prone to drought. Rajasthan, a state in India, emerged as the top producer of pearl millet. This study enhances yield forecasting for pearl millet using machine learning models across nine districts viz. Jaipur, Ajmer, Jodhpur, Bikaner, Bharatpur, Alwar, Sikar, Jhunjhunu and Nagaur in Rajasthan, India. Data from 1997-2019 (23 years), including yield data from the Directorate of Economics and Statistics and weather data from the NASA POWER web portal, were analysed. The study employed individual machine learning methods (GLM, ELNET, XGB, SVR and RF) and their ensemble combinations (GLM, ELNET, Cubist and RF). Discerning the overall best performing model across all locations remained challenging. For instance, while ensemble models exhibited subpar performance in Barmer and Nagaur, their performance ranged from satisfactory to commendable in other locations. To identify the best model, all models were ranked based on their R2 and nRMSE (%) values. Combined average ranks during training and testing revealed the model performance ranking as I-XGB (3.83) > I-GLM (4.28) > E-ELNET (4.32) > I-RF (4.67) > E-GLM (4.88) > I-SVR (4.90) > I-ELNET (4.94) > E-RF (6.03) > E-Cubist (7.15), where I denotes individual model, while E denotes ensemble model. Intriguingly, while individual GLM and XGB models demonstrated superior performance during calibration, they exhibited poorer performance during validation, potentially indicating issues of data overfitting. Hence, the ensemble ELNET approach is recommended for accurate prediction of pearl millet yield, followed by the individual RF model. These performances underscore the importance of tailored model selection based on specific geographic and environmental conditions.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0317602"},"PeriodicalIF":2.9,"publicationDate":"2025-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143605915","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-11eCollection Date: 2025-01-01DOI: 10.1371/journal.pone.0304545
Jingyi Wu, Jinyu Chen, Juncen Wu, Chun Liang Hsu
Objectives: Physical frailty is associated with increased risk of cognitive impairment. However, its impact on sustained cognitive processing as evaluated by intraindividual variability (IIV), and factors beneficial to IIV in physically frail older adults remain unexplored. This study aimed to quantify differences in IIV between older adults with and without physical frailty, and examine whether education facilitated maintenance of IIV.
Methods: This cross-sectional study included 121 community-dwelling older adults 65-90 years with/without physical frailty (PF and non-PF; n = 41 and n = 80 respectively). Physical frailty was determined via Short Physical Performance Battery. Dispersion across the seven components of the Montreal Cognitive Assessment (MoCA) was computed to ascertain IIV. Multivariate analysis of covariance was used to determine group differences in total score and IIV. Four moderation models were constructed to test the effects of education on age-total score and age-IIV relationships in PF and non-PF.
Results: Compared with non-PF, PF showed greater IIV (p = .022; partial η² = 0.044). Among PF, education moderated age-total score (R-sq = 0.084, F = 5.840, p < 0.021) and age-IIV (R-sq = 0.101, F = 7.454, p = 0.010) relationships. IIV increased with age for those with five years (β = 0.313, p = 0.006) or no formal education (β = 0.610, p = 0.001). Greater than seven years of education (β = 0.217, p = 0.050) may be required to maintain IIV at older age.
Conclusion: IIV may be a sensitive method to differentiate physically frail older adults. Additionally, perceived cognitive benefits of education may be dependent on physical functioning.
{"title":"Intraindividual variability differentiated older adults with physical frailty and the role of education in the maintenance of cognitive intraindividual variability.","authors":"Jingyi Wu, Jinyu Chen, Juncen Wu, Chun Liang Hsu","doi":"10.1371/journal.pone.0304545","DOIUrl":"https://doi.org/10.1371/journal.pone.0304545","url":null,"abstract":"<p><strong>Objectives: </strong>Physical frailty is associated with increased risk of cognitive impairment. However, its impact on sustained cognitive processing as evaluated by intraindividual variability (IIV), and factors beneficial to IIV in physically frail older adults remain unexplored. This study aimed to quantify differences in IIV between older adults with and without physical frailty, and examine whether education facilitated maintenance of IIV.</p><p><strong>Methods: </strong>This cross-sectional study included 121 community-dwelling older adults 65-90 years with/without physical frailty (PF and non-PF; n = 41 and n = 80 respectively). Physical frailty was determined via Short Physical Performance Battery. Dispersion across the seven components of the Montreal Cognitive Assessment (MoCA) was computed to ascertain IIV. Multivariate analysis of covariance was used to determine group differences in total score and IIV. Four moderation models were constructed to test the effects of education on age-total score and age-IIV relationships in PF and non-PF.</p><p><strong>Results: </strong>Compared with non-PF, PF showed greater IIV (p = .022; partial η² = 0.044). Among PF, education moderated age-total score (R-sq = 0.084, F = 5.840, p < 0.021) and age-IIV (R-sq = 0.101, F = 7.454, p = 0.010) relationships. IIV increased with age for those with five years (β = 0.313, p = 0.006) or no formal education (β = 0.610, p = 0.001). Greater than seven years of education (β = 0.217, p = 0.050) may be required to maintain IIV at older age.</p><p><strong>Conclusion: </strong>IIV may be a sensitive method to differentiate physically frail older adults. Additionally, perceived cognitive benefits of education may be dependent on physical functioning.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 3","pages":"e0304545"},"PeriodicalIF":2.9,"publicationDate":"2025-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143605921","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}