The Arctic marine ecosystem is undergoing a major, rapid transformation driven by climate change, resulting in complex and unpredictable shifts in zooplankton communities, which are key pelagic food web components. We synthesized extensive multi-year zooplankton datasets (2008–2021) collected by a Korean icebreaker research vessel (IBRV Araon; August 2016–2021) and a Japanese research vessel (RV Mirai; September 2008, 2010, 2012–2017, and 2021) in the western Arctic Ocean to examine the effects of environmental factors on zooplankton distribution. We determined the effect of key environmental variables, including integrated mean temperature, mean salinity, and fluorescence, on zooplankton community structure. We identified six distinct zooplankton communities shaped by regional characteristics and interannual oceanographic variability. The pronounced seasonal transition of zooplankton communities from summer to autumn, particularly in the Chukchi Sea and the Chukchi Borderland in 2017 and 2021, was the major finding. During summer, Pacific water inflow into the Chukchi Sea significantly increased Pacific species (e.g., Metridia pacifica) and meroplankton (e.g., barnacle larvae), with barnacle larvae extending into the Chukchi Borderland in 2017 and 2021. Although small species (e.g., Pseudocalanus spp.) remained dominant during the summer, but no clear increasing trend was observed in total abundance within the Chukchi Sea. By September, these Pacific Ocean–influenced communities had decreased rapidly, suggesting their high environmental dependency and incomplete establishment in the region. This study integrates multi-year, seasonally diverse datasets collected across a broad spatial range, providing a comprehensive understanding of how Arctic zooplankton respond to climate-induced environmental changes.
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