Pub Date : 2025-11-05eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.25058.1
Liam M Crowley, Finley Hutchinson, Douglas Boyes
We present a genome assembly from a male specimen of Watsonalla cultraria (Barred Hook-tip; Arthropoda; Insecta; Lepidoptera; Drepanidae). The genome sequence has a total length of 319.38 megabases. Most of the assembly (99.94%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Gene annotation of this assembly on Ensembl identified 16 011 protein-coding genes. The mitochondrial genome has also been assembled, with a length of 15.21 kilobases.
{"title":"The genome sequence of the Barred Hook-tip, <i>Watsonalla cultraria</i> (Fabricius, 1775) (Lepidoptera: Drepanidae).","authors":"Liam M Crowley, Finley Hutchinson, Douglas Boyes","doi":"10.12688/wellcomeopenres.25058.1","DOIUrl":"10.12688/wellcomeopenres.25058.1","url":null,"abstract":"<p><p>We present a genome assembly from a male specimen of <i>Watsonalla cultraria</i> (Barred Hook-tip; Arthropoda; Insecta; Lepidoptera; Drepanidae). The genome sequence has a total length of 319.38 megabases. Most of the assembly (99.94%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Gene annotation of this assembly on Ensembl identified 16 011 protein-coding genes. The mitochondrial genome has also been assembled, with a length of 15.21 kilobases.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"618"},"PeriodicalIF":0.0,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12770887/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145918598","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-05eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.25055.1
Liam M Crowley, Katie J Woodcock
We present a genome assembly from an individual male Orthonevra brevicornis (hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The assembly contains two haplotypes with total lengths of 788.61 megabases and 718.58 megabases. Most of haplotype 1 (91.69%) is scaffolded into 6 chromosomal pseudomolecules, including the X chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.36 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.
{"title":"The genome sequence of the hoverfly, <i>Orthonevra brevicornis</i> (Loew, 1843) (Diptera: Syrphidae).","authors":"Liam M Crowley, Katie J Woodcock","doi":"10.12688/wellcomeopenres.25055.1","DOIUrl":"10.12688/wellcomeopenres.25055.1","url":null,"abstract":"<p><p>We present a genome assembly from an individual male <i>Orthonevra brevicornis</i> (hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The assembly contains two haplotypes with total lengths of 788.61 megabases and 718.58 megabases. Most of haplotype 1 (91.69%) is scaffolded into 6 chromosomal pseudomolecules, including the X chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.36 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"616"},"PeriodicalIF":0.0,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12743221/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145850628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-31eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.24335.2
Niccole Ranaei-Zamani, Olayinka Kowobari, Dimitrios Siassakos, Sara Hillman, Anna L David, Subhabrata Mitra
Introduction: Fetal monitoring is a crucial component of antenatal care, facilitating early detection of fetal compromise and improving pregnancy outcomes. Traditional monitoring methods such as cardiotocography (CTG) and ultrasound are effective but primarily limited to clinical settings, requiring specialized expertise and resources. The rise of wearable medical devices and artificial intelligence (AI) applications presents an opportunity to enhance fetal monitoring by enabling continuous, real-time data collection outside clinical environments. These technologies have the potential to improve fetal health and obstetric outcomes, particularly in resource-limited settings. This systematic review aims to evaluate the use of wearable devices for antenatal fetal monitoring and their impact on fetal and obstetric outcomes.
Methods and analysis: This systematic review will adhere to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines and the Synthesis Without Meta-analysis (SWiM) framework. A comprehensive search of PubMed, Embase, Cochrane Library, and Web of Science will be conducted to identify primary research studies investigating wearable devices designed for fetal monitoring during pregnancy. Studies will be included if they assess the effectiveness, accuracy, and clinical impact of wearable fetal monitoring devices. Primary outcomes will include markers of fetal well-being as well as neonatal and obstetric outcomes. Secondary outcomes will focus on patient experience and acceptability. Data extraction and quality assessment will be conducted independently by two reviewers using the National Institutes of Health (NIH) Quality Assessment Tool and the Newcastle-Ottawa Scale. A narrative synthesis will be performed to summarise the findings.
Ethics and dissemination: Ethical approval is not required since the study involves analysing published literature. The findings will be shared through peer-reviewed publications and conference presentations. This review will enhance the evidence base regarding the clinical utility of wearable fetal monitoring technologies and inform future research and device development. PROSPERO Registration: CRD4202348755 (current version 4.1).
胎儿监测是产前保健的重要组成部分,有助于早期发现胎儿损伤和改善妊娠结局。传统的监测方法,如心脏造影(CTG)和超声是有效的,但主要局限于临床环境,需要专门的专业知识和资源。可穿戴医疗设备和人工智能(AI)应用的兴起为加强胎儿监测提供了机会,可以在临床环境之外实现连续、实时的数据收集。这些技术有可能改善胎儿健康和产科结果,特别是在资源有限的情况下。本系统综述旨在评估可穿戴设备用于产前胎儿监测及其对胎儿和产科结局的影响。方法和分析:本系统评价将遵循系统评价和荟萃分析的首选报告项目(PRISMA)指南和无荟萃分析的综合(SWiM)框架。将对PubMed、Embase、Cochrane Library和Web of Science进行全面搜索,以确定调查孕期胎儿监测可穿戴设备的初步研究。如果研究评估了可穿戴胎儿监测设备的有效性、准确性和临床影响,则将纳入研究。主要结果将包括胎儿健康以及新生儿和产科结果的标志。次要结果将集中于患者体验和可接受性。数据提取和质量评估将由两位审稿人使用美国国立卫生研究院(NIH)质量评估工具和纽卡斯尔-渥太华量表独立进行。将进行叙述综合,以总结调查结果。伦理和传播:由于本研究涉及分析已发表的文献,因此不需要伦理批准。研究结果将通过同行评审的出版物和会议报告进行分享。本综述将增强可穿戴胎儿监测技术临床应用的证据基础,并为未来的研究和设备开发提供信息。普洛斯彼罗注册:CRD4202348755(当前版本4.1)。
{"title":"Protocol for a systematic review of wearable devices for antenatal fetal monitoring.","authors":"Niccole Ranaei-Zamani, Olayinka Kowobari, Dimitrios Siassakos, Sara Hillman, Anna L David, Subhabrata Mitra","doi":"10.12688/wellcomeopenres.24335.2","DOIUrl":"10.12688/wellcomeopenres.24335.2","url":null,"abstract":"<p><strong>Introduction: </strong>Fetal monitoring is a crucial component of antenatal care, facilitating early detection of fetal compromise and improving pregnancy outcomes. Traditional monitoring methods such as cardiotocography (CTG) and ultrasound are effective but primarily limited to clinical settings, requiring specialized expertise and resources. The rise of wearable medical devices and artificial intelligence (AI) applications presents an opportunity to enhance fetal monitoring by enabling continuous, real-time data collection outside clinical environments. These technologies have the potential to improve fetal health and obstetric outcomes, particularly in resource-limited settings. This systematic review aims to evaluate the use of wearable devices for antenatal fetal monitoring and their impact on fetal and obstetric outcomes.</p><p><strong>Methods and analysis: </strong>This systematic review will adhere to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines and the Synthesis Without Meta-analysis (SWiM) framework. A comprehensive search of PubMed, Embase, Cochrane Library, and Web of Science will be conducted to identify primary research studies investigating wearable devices designed for fetal monitoring during pregnancy. Studies will be included if they assess the effectiveness, accuracy, and clinical impact of wearable fetal monitoring devices. Primary outcomes will include markers of fetal well-being as well as neonatal and obstetric outcomes. Secondary outcomes will focus on patient experience and acceptability. Data extraction and quality assessment will be conducted independently by two reviewers using the National Institutes of Health (NIH) Quality Assessment Tool and the Newcastle-Ottawa Scale. A narrative synthesis will be performed to summarise the findings.</p><p><strong>Ethics and dissemination: </strong>Ethical approval is not required since the study involves analysing published literature. The findings will be shared through peer-reviewed publications and conference presentations. This review will enhance the evidence base regarding the clinical utility of wearable fetal monitoring technologies and inform future research and device development. PROSPERO Registration: CRD4202348755 (current version 4.1).</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"356"},"PeriodicalIF":0.0,"publicationDate":"2025-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12635520/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145588748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Introduction: Sickle cell disease affects tribal communities unequally. Self-management empowers the patient to take corrective actions, improve decision-making, and deepen understanding of the disease. Considering the unique challenges of the tribal community, implementing self-management complementary to the prescribed clinical management for sickle cell disease care can lead to greater autonomy, improved health outcomes, and, ultimately, quality of life. Hence, this study aims to develop a feasible and acceptable self-management package for tribal persons living with Sickle cell disease and caregivers residing in the Mysuru and Chamarajanagar districts of Karnataka.
Method: The study will be conducted in two phases. In the first phase, a self-management package will be developed with insights from health providers working with Persons living with sickle cell disease, non-government organisations, Subject experts and persons with sickle cell disease and caregiver. This package will be implemented in the second phase for persons living with sickle cell disease. Participants will undergo capacity-building training and receive regular follow-up for 12 months through monthly telephonic calls and a few home visits. Assessment will be done with Acceptability Intervention Measurement (AIM) and Feasibility Intervention Measurement (FIM) at regular intervals. Suggestions and feedback will be added to make the package more comprehensive. Thus, the expected outcome is an acceptable and feasible self-management package.
Conclusion: This proposed study is an important step towards addressing a critical gap in sickle cell disease management in tribal populations in India. The anticipated outcome of this research is to enhance self-management practices in individuals with sickle cell disease.
{"title":"Equipping Persons with Sickle Cell Disease, Transforming Care: A Protocol Paper on Feasibility and Acceptability of Self-Management Package in the Tribal Communities of Southern India.","authors":"Manashri Bhuyar, Tanya Seshadri, Pooja Aggarwal, Anandhu Kr, Deepa Bhat","doi":"10.12688/wellcomeopenres.24369.1","DOIUrl":"10.12688/wellcomeopenres.24369.1","url":null,"abstract":"<p><strong>Introduction: </strong>Sickle cell disease affects tribal communities unequally. Self-management empowers the patient to take corrective actions, improve decision-making, and deepen understanding of the disease. Considering the unique challenges of the tribal community, implementing self-management complementary to the prescribed clinical management for sickle cell disease care can lead to greater autonomy, improved health outcomes, and, ultimately, quality of life. Hence, this study aims to develop a feasible and acceptable self-management package for tribal persons living with Sickle cell disease and caregivers residing in the Mysuru and Chamarajanagar districts of Karnataka.</p><p><strong>Method: </strong>The study will be conducted in two phases. In the first phase, a self-management package will be developed with insights from health providers working with Persons living with sickle cell disease, non-government organisations, Subject experts and persons with sickle cell disease and caregiver. This package will be implemented in the second phase for persons living with sickle cell disease. Participants will undergo capacity-building training and receive regular follow-up for 12 months through monthly telephonic calls and a few home visits. Assessment will be done with Acceptability Intervention Measurement (AIM) and Feasibility Intervention Measurement (FIM) at regular intervals. Suggestions and feedback will be added to make the package more comprehensive. Thus, the expected outcome is an acceptable and feasible self-management package.</p><p><strong>Conclusion: </strong>This proposed study is an important step towards addressing a critical gap in sickle cell disease management in tribal populations in India. The anticipated outcome of this research is to enhance self-management practices in individuals with sickle cell disease.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"607"},"PeriodicalIF":0.0,"publicationDate":"2025-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12800602/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145990935","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-24eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.25077.1
Tammy Horton, Andrew R Gates, Chris Fletcher
We present a genome assembly from an individual Bathysaurus mollis (highfin lizardfish; Chordata; Actinopteri; Aulopiformes; Bathysauridae). The genome sequence has a total length of 1 065.77 megabases. Most of the assembly (95.16%) is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 16.68 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.
{"title":"The genome sequence of the highfin lizardfish, <i>Bathysaurus mollis</i> Günther, 1878 (Aulopiformes: Bathysauridae).","authors":"Tammy Horton, Andrew R Gates, Chris Fletcher","doi":"10.12688/wellcomeopenres.25077.1","DOIUrl":"10.12688/wellcomeopenres.25077.1","url":null,"abstract":"<p><p>We present a genome assembly from an individual <i>Bathysaurus mollis</i> (highfin lizardfish; Chordata; Actinopteri; Aulopiformes; Bathysauridae). The genome sequence has a total length of 1 065.77 megabases. Most of the assembly (95.16%) is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 16.68 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"605"},"PeriodicalIF":0.0,"publicationDate":"2025-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12640494/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145597611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-24eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.25074.1
Liam M Crowley
We present a genome assembly from an individual female Priocnemis perturbator (spider-hunting wasp; Arthropoda; Insecta; Hymenoptera; Pompilidae). The genome sequence has a total length of 391.62 megabases. Most of the assembly (67.88%) is scaffolded into 15 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 28.93 kilobases. Gene annotation of this assembly on Ensembl identified 24 581 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.
{"title":"The genome sequence of the spider-hunting wasp, <i>Priocnemis perturbator</i> (Harris, 1780) (Hymenoptera: Pompilidae).","authors":"Liam M Crowley","doi":"10.12688/wellcomeopenres.25074.1","DOIUrl":"10.12688/wellcomeopenres.25074.1","url":null,"abstract":"<p><p>We present a genome assembly from an individual female <i>Priocnemis perturbator</i> (spider-hunting wasp; Arthropoda; Insecta; Hymenoptera; Pompilidae). The genome sequence has a total length of 391.62 megabases. Most of the assembly (67.88%) is scaffolded into 15 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 28.93 kilobases. Gene annotation of this assembly on Ensembl identified 24 581 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"599"},"PeriodicalIF":0.0,"publicationDate":"2025-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12770895/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145918652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-23eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.23879.2
Lisa Zhang, Paulina M Schenk, Micaela Santilli, Alison J Wright, Marta M Marques, Marie Johnston, Robert West, Susan Michie
Background: Understanding how interventions work requires clear hypotheses, rigorous testing, and accurate reporting of links between behaviour change techniques (BCTs)-the smallest replicable active components of interventions-and mechanisms of action (MoAs), the processes through which behaviour changes. The Theory and Techniques Tool (TaTT) provides a grid of likely BCT-MoA links to guide intervention design, based on literature synthesis and expert consensus. Recently, the Behaviour Change Intervention Ontology development team introduced detailed, computer-readable lower-level ontologies for BCTs and MoAs, but limited guidance exists on integrating the BCT-MoA links proposed by the TaTT with these ontologies. This study aimed to map BCTs and MoAs from the TaTT to corresponding classes (i.e., categorisations or groupings) in the Behaviour Change Technique Ontology (BCTO) and Mechanism of Action (MoA) Ontology.
Methods: Three researchers mapped the classes from the BCTO onto 74 BCTs within the TaTT, using their definitions. Similarly, two researchers mapped classes from the MoA Ontology onto the 26 MoAs within the TaTT. Discrepancies were resolved through discussion with senior researchers. Subsequent updates to the BCT and MoA Ontologies necessitated a researcher updating the mappings, with the revisions being verified by the research team.
Results: From the BCTO, 85 BCTs were mapped to the 74 BCTs present in the TaTT, while 56 MoAs from the MoA Ontology were mapped to the 26 MoAs present in the TaTT. Subclasses of these 85 BCTs and 56 MoAs provide additional specificity and can be found by further engaging with these ontologies.
Discussion: Mapping the TaTT to the Behaviour Change Intervention Ontology enhances clarity and precision in selecting and reporting BCT-MoA links, enabling integration of data across frameworks. Future work should maintain these mappings as ontologies evolve and users provide more feedback and evidence on BCTs, MoAs and their links, ensuring they remain relevant and user-friendly.
{"title":"Linking behaviour change techniques to mechanisms of action: Using the Theory and Techniques Tool alongside the Behaviour Change Intervention Ontology.","authors":"Lisa Zhang, Paulina M Schenk, Micaela Santilli, Alison J Wright, Marta M Marques, Marie Johnston, Robert West, Susan Michie","doi":"10.12688/wellcomeopenres.23879.2","DOIUrl":"10.12688/wellcomeopenres.23879.2","url":null,"abstract":"<p><strong>Background: </strong>Understanding how interventions work requires clear hypotheses, rigorous testing, and accurate reporting of links between behaviour change techniques (BCTs)-the smallest replicable active components of interventions-and mechanisms of action (MoAs), the processes through which behaviour changes. The Theory and Techniques Tool (TaTT) provides a grid of likely BCT-MoA links to guide intervention design, based on literature synthesis and expert consensus. Recently, the Behaviour Change Intervention Ontology development team introduced detailed, computer-readable lower-level ontologies for BCTs and MoAs, but limited guidance exists on integrating the BCT-MoA links proposed by the TaTT with these ontologies. This study aimed to map BCTs and MoAs from the TaTT to corresponding classes (i.e., categorisations or groupings) in the Behaviour Change Technique Ontology (BCTO) and Mechanism of Action (MoA) Ontology.</p><p><strong>Methods: </strong>Three researchers mapped the classes from the BCTO onto 74 BCTs within the TaTT, using their definitions. Similarly, two researchers mapped classes from the MoA Ontology onto the 26 MoAs within the TaTT. Discrepancies were resolved through discussion with senior researchers. Subsequent updates to the BCT and MoA Ontologies necessitated a researcher updating the mappings, with the revisions being verified by the research team.</p><p><strong>Results: </strong>From the BCTO, 85 BCTs were mapped to the 74 BCTs present in the TaTT, while 56 MoAs from the MoA Ontology were mapped to the 26 MoAs present in the TaTT. Subclasses of these 85 BCTs and 56 MoAs provide additional specificity and can be found by further engaging with these ontologies.</p><p><strong>Discussion: </strong>Mapping the TaTT to the Behaviour Change Intervention Ontology enhances clarity and precision in selecting and reporting BCT-MoA links, enabling integration of data across frameworks. Future work should maintain these mappings as ontologies evolve and users provide more feedback and evidence on BCTs, MoAs and their links, ensuring they remain relevant and user-friendly.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"192"},"PeriodicalIF":0.0,"publicationDate":"2025-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12596556/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145490446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-21eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.25046.1
We present a genome assembly from an individual male Thera firmata (Pine Carpet; Arthropoda; Insecta; Lepidoptera; Geometridae). The assembly contains two haplotypes with total lengths of 301.47 megabases and 300.34 megabases. Most of haplotype 1 (98.51%) is scaffolded into 19 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. Gene annotation of this assembly on Ensembl identified 11 832 protein-coding genes. The mitochondrial genome has also been assembled, with a length of 16.59 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.
{"title":"The genome sequence of the Pine Carpet, <i>Thera firmata</i> Hübner, 1822 (Lepidoptera: Geometridae).","authors":"","doi":"10.12688/wellcomeopenres.25046.1","DOIUrl":"10.12688/wellcomeopenres.25046.1","url":null,"abstract":"<p><p>We present a genome assembly from an individual male <i>Thera firmata</i> (Pine Carpet; Arthropoda; Insecta; Lepidoptera; Geometridae). The assembly contains two haplotypes with total lengths of 301.47 megabases and 300.34 megabases. Most of haplotype 1 (98.51%) is scaffolded into 19 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. Gene annotation of this assembly on Ensembl identified 11 832 protein-coding genes. The mitochondrial genome has also been assembled, with a length of 16.59 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"586"},"PeriodicalIF":0.0,"publicationDate":"2025-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12770886/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145918657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-21eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.25061.1
David C Lees
We present a genome assembly from an individual male Cauchas fibulella (Speedwell Longhorn; Arthropoda; Insecta; Lepidoptera; Adelidae). The assembly contains two haplotypes with total lengths of 578.63 megabases and 573.48 megabases. The whole sequence for haplotype 1 is scaffolded into 25 chromosomal pseudomolecules, including the Z chromosome. Most of haplotype 2 (97.29%) is scaffolded into 25 chromosomal pseudomolecules, also including a Z chromosome. The mitochondrial genome has also been assembled, with a length of 15.77 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.
{"title":"The genome sequence of the Speedwell Longhorn, <i>Cauchas fibulella</i> ([Denis & Schiffermüller], 1775) (Lepidoptera: Adelidae).","authors":"David C Lees","doi":"10.12688/wellcomeopenres.25061.1","DOIUrl":"10.12688/wellcomeopenres.25061.1","url":null,"abstract":"<p><p>We present a genome assembly from an individual male <i>Cauchas fibulella</i> (Speedwell Longhorn; Arthropoda; Insecta; Lepidoptera; Adelidae). The assembly contains two haplotypes with total lengths of 578.63 megabases and 573.48 megabases. The whole sequence for haplotype 1 is scaffolded into 25 chromosomal pseudomolecules, including the Z chromosome. Most of haplotype 2 (97.29%) is scaffolded into 25 chromosomal pseudomolecules, also including a Z chromosome. The mitochondrial genome has also been assembled, with a length of 15.77 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"594"},"PeriodicalIF":0.0,"publicationDate":"2025-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12754359/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145890055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-21eCollection Date: 2025-01-01DOI: 10.12688/wellcomeopenres.25047.1
Ryan Mitchell, Liam M Crowley, James McCulloch, Olga Sivell
We present a genome assembly from an individual male Xyphosia miliaria (tephritid fruit fly; Arthropoda; Insecta; Diptera; Tephritidae). The assembly contains two haplotypes with total lengths of 806.98 megabases and 799.90 megabases. Most of haplotype 1 (97.34%) is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. Most of haplotype 2 (83.09%) is scaffolded into 5 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 19.41 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.
{"title":"The genome sequence of a tephritid fruit fly, <i>Xyphosia miliaria</i> (Schrank, 1781) (Diptera: Tephritidae).","authors":"Ryan Mitchell, Liam M Crowley, James McCulloch, Olga Sivell","doi":"10.12688/wellcomeopenres.25047.1","DOIUrl":"10.12688/wellcomeopenres.25047.1","url":null,"abstract":"<p><p>We present a genome assembly from an individual male <i>Xyphosia miliaria</i> (tephritid fruit fly; Arthropoda; Insecta; Diptera; Tephritidae). The assembly contains two haplotypes with total lengths of 806.98 megabases and 799.90 megabases. Most of haplotype 1 (97.34%) is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. Most of haplotype 2 (83.09%) is scaffolded into 5 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 19.41 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.</p>","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"10 ","pages":"585"},"PeriodicalIF":0.0,"publicationDate":"2025-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12749564/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145879036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}