Wellcome Open Research最新文献

We present a genome assembly from an individual female Paratalanta hyalinalis (Knapweed Pearl; Arthropoda; Insecta; Lepidoptera; Crambidae). The assembly contains two haplotypes with total lengths of 529.45 megabases and 506.05 megabases. Most of haplotype 1 (99.95%) is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome, while most of haplotype 2 (99.85%) is scaffolded into 29 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 15.2 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

We present a genome assembly from an individual female Apaeleticus inimicus (ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The assembly contains two haplotypes with total lengths of 224.01 megabases and 221.54 megabases. Most of haplotype 1 (99.81%) is scaffolded into 10 chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 30.84 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

We present a genome assembly from a specimen of Ammodytes marinus (the lesser sandeel; Chordata; Actinopteri; Uranoscopiformes; Ammodytidae). The genome sequence has a total length of 777.80 megabases. Most of the primary assembly (95.51%) is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.53 kilobases in length. Gene annotation of this assembly on Ensembl identified 22,410 protein-coding genes.

We present a genome assembly from a specimen of Trididemnum clinides (photosymbiotic ascidian; Chordata; Ascidiacea; Aplousobranchia; Didemnidae). The T. clinides genome sequence has a total length of 906.92 megabases. Most of the assembly (97.83%) is scaffolded into 23 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 14.98 kilobases in length. The host ascidian has multiple symbionts, including Prochloron, a cyanobacterial genus that can also synthesise bioactive natural products of interest for potential therapeutic development. Biosynthesis of active compounds sometimes involves microbial associates.

We present a genome assembly from an individual Onchidella celtica (Celtic sea slug; Mollusca; Gastropoda; Systellommatophora; Onchidiidae). The genome sequence has a total length of 1 141.02 megabases. Most of the assembly (99.92%) is scaffolded into 18 chromosomal pseudomolecules. Gene annotation of this assembly on Ensembl identified 12 582 protein-coding genes. The mitochondrial genome has also been assembled, with a length of 13.99 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

We present a genome assembly from an individual female Euthrix potatoria (Drinker; Arthropoda; Insecta; Lepidoptera; Lasiocampidae). The assembly contains two haplotypes with total lengths of 487.86 megabases and 466.06 megabases. Most of haplotype 1 (99.97%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.43 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

We present a genome assembly from an individual female Philanthus triangulum (Bee Wolf; Arthropoda; Insecta; Hymenoptera; Crabronidae). The genome sequence has a total length of 575.71 megabases. The assembly is partially (49.26%) scaffolded into 13 chromosomal pseudomolecules, with the remainder consisting of repetitive sequence that could not be assembled. The mitochondrial genome has also been assembled, with a length of 24.54 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

We present a genome assembly from an individual Myxine glutinosa (Hagfish; Chordata; Myxini; Myxiniformes; Myxinidae). The genome sequence has a total length of 3 057.50 megabases. Most of the assembly (87.13%) is scaffolded into 14 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 19.65 kilobases.

We present a genome assembly from a specimen of Corticium candelabrum (sponge; Porifera; Homoscleromorpha; Homosclerophorida; Plakinidae). The genome sequence has a total length of 185.49 megabases. Most of the assembly (99.4%) is scaffolded into 22 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 18.19 kilobases in length. Gene annotation of this assembly on Ensembl identified 26,198 protein-coding genes. The metagenome of the specimen was also assembled, and 53 binned bacterial genomes were identified, including 44 high-quality MAGs that were typical of high microbial abundance sponge and included, besides the phyla Chloroflexota (class Dehalococcoidia), Acidobacteriota (order Acidomicrobiales), Alpha- and Gammaproteobacteria, also representatives of several candidatus phyla (Candidatus Latescibacterota, Binatota, Poribacteria).

We present a genome assembly from an individual female Perithous albicinctus (ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The genome sequence has a total length of 383.46 megabases. Most of the assembly (97.06%) is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 35.92 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.