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2014 IEEE International Symposium on Bioelectronics and Bioinformatics (IEEE ISBB 2014)最新文献

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An implantable micro imaging device for molecular imaging in a brain of freely-moving mouse 一种可植入自由运动小鼠脑内分子成像的微成像装置
K. Sasagawa, Yasumi Ohta, Mayumi Motoyama, T. Noda, T. Tokuda, J. Ohta, Sadao Shiosaka
We have developed an implantable micro imaging device that can observe specific molecules such as neuropsin in the deep brain of a freely-moving mouse with minimal invasiveness. A chemical substance, 4-methylcoumaryl-7-amide (MCA), which reacts with neuropsin and changes to fluorophore, 7-amino-4-methyl coumarin (AMC), is injected by a specially designed cannula employed with the device. The implanted sensor can measure spatio-temporal dynamics of neuropisn through fluorescence of AMC, which is accompanied by specific behavior in artificially induced epilepsy. The damage induced by the implantation of the device has been investigated. Four weeks after the implantation, no connective tissues are observed at the implanted locations and imaging was successfully conducted. Immuno-staining of the brain after the implantation reveals that the damage area is limited in less than 100 μm from the sensor surface.
我们已经开发了一种可植入的微成像设备,可以以最小的侵入性观察自由移动的老鼠大脑深处的特定分子,如神经磷脂。一种化学物质,4-甲基香豆素-7-酰胺(MCA),与神经素反应并转变为荧光基团,7-氨基-4-甲基香豆素(AMC),通过与该装置一起使用的特殊设计的套管注射。植入的传感器可以通过AMC的荧光测量神经系统的时空动态,并伴有人工诱发癫痫的特定行为。对该装置的植入所引起的损伤进行了研究。植入四周后,植入部位未见结缔组织,成像成功。植入后的大脑免疫染色显示,损伤区域被限制在距离传感器表面不到100 μm的范围内。
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引用次数: 1
Distinguishing normal and pulmonary edema chest x-ray using Gabor filter and SVM 用Gabor滤波和支持向量机鉴别正常胸片和肺水肿胸片
Atul Kumar, Yen-Yu Wang, Kai-Che Liu, I-Chen Tsai, Ching-Chun Huang, Nguyen Hung
Pulmonary edema, i.e. excess of extravascular fluid in lungs, is a common manifestation of various clinical conditions. Although the etiology of the pulmonary edema is deduced with the help of history, physical examination and various biochemical and radiological investigations, computer aided evaluation of pulmonary edema will be helpful for physicians in determining the course of management for the condition. In this study we present texture analysis of chest x-ray, using Gabor filter and one of the machine learning techniques, Support Vector Machine (SVM), to distinguish the normal chest x-ray from the chest x-ray of pulmonary edema. This is an initial step towards computer aided quantitative assessment of the pulmonary edema using chest x-ray.
肺水肿,即肺血管外液体过多,是各种临床疾病的常见表现。虽然肺水肿的病因是通过病史、体格检查和各种生化和放射学检查推断出来的,但肺水肿的计算机辅助评估将有助于医生确定病情的治疗过程。在这项研究中,我们提出了胸片的纹理分析,使用Gabor滤波和机器学习技术之一的支持向量机(SVM)来区分正常的胸片和肺水肿的胸片。这是利用胸部x线对肺水肿进行计算机辅助定量评估的第一步。
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引用次数: 14
Effect of meal intake on the quality of empirical dynamic models for Type 1 Diabetes 膳食摄入量对1型糖尿病经验动态模型质量的影响
Peng Li, Lei Yu, Jiping Wang, Liquan Guo, Qiang Fang
A model-based controller for artificial pancreas requires a model that is able to predict future glucose trends precisely. To quantify the effect of meal intake on the quality of empirical dynamic models (EDM), changing meal conditions (e.g., the meal amounts and times variation, individual differences) were simulated to generate data. Both single-input single-output (SISO) and multi-input single-output (MISO) EDM were identified and evaluated via model identification technology. The prediction accuracy of these models varies significantly within a subject and between subjects due to the different variation of meal amounts, and the additional afternoon snack and meal times shift have the greatest influence on these models. The prediction accuracy of MISO models are worse than that of SISO models under the changing meal condition.
基于模型的人工胰腺控制器需要一个能够准确预测未来血糖趋势的模型。为了量化采食量对经验动态模型(EDM)质量的影响,模拟了不同的采食量条件(如采食量和时间变化、个体差异)来生成数据。采用模型识别技术对单输入单输出(SISO)和多输入单输出(MISO)电火花加工进行了识别和评价。由于用餐量的不同,这些模型的预测精度在同一受试者内部和受试者之间存在显著差异,其中额外的下午点心和用餐时间变化对这些模型的影响最大。在变粉条件下,MISO模型的预测精度低于SISO模型。
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引用次数: 2
A novel approach for ECG data compression in healthcare monitoring system 健康监护系统中心电数据压缩的新方法
Shun-Ren Siao, Chih-Cheng Hsu, Mark Po-Hung Lin, Shuenn-Yuh Lee
This paper presents a novel approach for electrocardiogram (ECG) data compression in a healthcare monitoring system, which helps to reduce power consumption during wireless communication. The proposed ECG data compression approach consists of multilevel vector (MLV) compression, integer-linear-programming (ILP)-based compression, and Huffman coding. The MLV compression provides different compression levels for different parts of ECG signal. The ILP-based compression achieves even higher compression ratio while satisfying tolerable error rate. The Huffman coding encodes compressed ECG data without data loss. Experimental results based on the MIT-BIH arrhythmia database show that our approach result in the best quality and accuracy in terms of compression ratio and error rate compared with the previous works.
本文提出了一种新的医疗监测系统中心电图数据压缩方法,该方法有助于降低无线通信过程中的功耗。提出的心电数据压缩方法包括多层向量(MLV)压缩、基于整数线性规划(ILP)的压缩和霍夫曼编码。MLV压缩为心电信号的不同部分提供了不同的压缩级别。基于ilp的压缩在满足可容忍错误率的同时实现了更高的压缩比。霍夫曼编码对压缩后的心电数据进行编码,不会造成数据丢失。基于MIT-BIH心律失常数据库的实验结果表明,与以往的工作相比,我们的方法在压缩比和错误率方面具有最好的质量和准确性。
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引用次数: 9
The applications of projected capacitive array sensing in healthcare 投影电容阵列传感在医疗保健中的应用
Wen-Ying Chang, Chi-Chun Chen, Chin-Lung Yang
This paper presents a cost-effective sensor system for the applications of large area array sensing. Unlike the traditional pressure sensing methods, projected capacitor technologies are proposed for sensing. The rapid charge time method is utilized to measure the capacitance values of the projected capacitive array electrodes. By constructing the process of projected capacitive array electrode, the required characteristics of the projected capacitor are identified, especially characteristics for large area applications. Three main factors, the area of electrodes, the use of shielding and gap between the guard ring and the electrode, also affect the capacitance primary value especially in the large-size applications. At last, a flexible projected capacitive sensing array with 8 × 10 electrodes was implemented to validate the feasibility of projected capacitive array electrodes.
本文提出了一种适用于大面积阵列传感应用的高性价比传感器系统。与传统的压力传感方法不同,投影电容技术被提出用于传感。采用快速充电时间法测量投影电容阵列电极的电容值。通过构建投射电容阵列电极的工艺,确定了投射电容所需的特性,特别是大面积应用的特性。三个主要因素,即电极的面积,屏蔽的使用以及保护环与电极之间的间隙,也会影响电容初级值,特别是在大尺寸应用中。最后,设计了一个8 × 10个电极的柔性投影电容传感阵列,验证了投影电容阵列电极的可行性。
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引用次数: 5
Evaluating the effectiveness of low level laser and cupping on low back pain by checking the plasma cortisol level 通过检测血浆皮质醇水平,评价低水平激光联合拔罐治疗腰痛的疗效
M. Lin, Chi-Wan Lin, Ya-Hui Hsieh, Hung-chien Wu, Yong-Sheng Shih, Chuan-Tsung Su, I-Ting Chiu, Jih-Huah Wu
Low level laser therapy (LLLT) is effective in a lot of clinical treatments, but the photobiological basis of this therapy is not well understood. From our previous study, the effectiveness of laser acupuncture (LA) and cupping applied on low back pain (LBP) has been proved. However, the variation of the plasma cortisol level is unknown. Thus, this study aims to evaluate the effectiveness of LA and cupping on LBP by checking the plasma cortisol level. Fifty patients of either sex over 60 years old with LBP were recruited into a single blinded trial. Active group (LA plus soft cupping) and placebo group (sham LA plus soft cupping) were treated for five days. Laser, 40mW, wavelength 808nm, pulse rate 20Hz, was used to irradiate Weizhong (BL40) and Ashi acupoints for 10 minutes. The variation of VAS was recorded and blood samples were taken for the measurement of plasma cortisol levels. There was a significant fall in plasma cortisol in active group (p = 0.013) and placebo group (p = 0.039) after five days' treatment. This result showed that for the people with chronic LBP there is a beneficial effect if they continuously receive the treatment for five days. However, the combination of LA and cupping seems to quickly reduce the inflammation situation than placebo group did.
低水平激光治疗(LLLT)在许多临床治疗中都是有效的,但这种治疗的光生物学基础尚不清楚。从我们之前的研究中,我们已经证实了激光针灸(LA)和拔罐治疗腰痛(LBP)的有效性。然而,血浆皮质醇水平的变化是未知的。因此,本研究旨在通过检测血浆皮质醇水平来评估LA和拔罐对LBP的疗效。50名60岁以上的LBP患者不分性别被招募到一项单盲试验中。活性组(LA +软拔罐)和安慰剂组(假LA +软拔罐)治疗5 d。采用激光40mW,波长808nm,脉冲率20Hz照射胃中(BL40)、阿石穴10分钟。记录VAS变化,并采血测定血浆皮质醇水平。治疗5 d后,治疗组血浆皮质醇水平显著下降(p = 0.013),对照组血浆皮质醇水平显著下降(p = 0.039)。这一结果表明,对于患有慢性腰痛的人来说,如果他们连续接受5天的治疗,就会有有益的效果。然而,与安慰剂组相比,LA和拔罐的组合似乎能迅速减轻炎症情况。
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引用次数: 10
ThuPIS: A new affective image system for psychological analysis 一种新的心理分析情感意象系统
S. Bao, Huimin Ma, Wenyu Li
Traditional evaluations of human psychological status usually have a great dependence on the experience of the operator, and it is still a challenge to automate the evaluation process. In this study, a new image system ThuPIS (the Tsinghua Psychological Image System) is designed based on Minnesota Multiphasic Personality Inventory (MMPI), a classical personality inventory in clinical mental health diagnose. The goal of ThuPIS is to build an ontology of affective images, which can active difference of physiological reactions among people with different psychological status. Specific image contents were chosen according to the items of MMPI, and organized by a hierarchy structure. Images were rated according to an overall impression, and those with affective ambiguous were eliminated. An experiment was conducted based on ThuPIS, and the results provide evidence that images in this image system could lead to difference in response time of positive facial expression when participants hold different attitudes towards the background images. This new image system could also supplies materials for other studies on human cognition. It is a brand new work and more practical assessments on the new image system are expected along the way.
传统的人的心理状态评价往往很大程度上依赖于操作者的经验,而且评价过程的自动化仍然是一个挑战。本研究以明尼苏达多相人格量表(MMPI)作为临床心理健康诊断的经典人格量表为基础,设计了一套新的图像系统——清华心理图像系统(ThuPIS)。该系统的目标是建立一个情感图像本体,以激活不同心理状态的人的生理反应差异。根据MMPI的条目选择具体的图像内容,并采用层次结构进行组织。根据整体印象对图片进行评分,那些有情感歧义的被剔除。基于ThuPIS进行了实验,实验结果证明,当被试对背景图像持不同态度时,该图像系统中的图像会导致积极面部表情的反应时间的差异。这种新的图像系统也可以为人类认知的其他研究提供材料。这是一项全新的工作,希望在此过程中对新图像系统进行更多的实际评估。
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引用次数: 6
Classification of leukemia gene expression profiles based on multivariant optimization algorithm 基于多变量优化算法的白血病基因表达谱分类
Yajie Liu, Xinling Shi, Changxing Gou, Baolei Li, Qinhu Zhang, Lv Danjv, Yunchao Huang
Classification of leukemia samples based on gene expression profiles has been proved an efficient way. Large numbers of intelligence algorithms have been exploited based on this purpose. However, few of them display stable and accurate performance for both low and high gene dimensionalities. Still none of them could keep the history information of optimization. Here, a classification algorithm based on the novel multivariant optimization algorithm (MOA) is proposed. Leukemia gene expression profiles with different dimensionalities are used for validation. The particle swarm optimization (PSO) and the two-layer particle swarm optimization (TLPSO) algorithm are used for comparison. The MOA shows stable and relatively accurate classification performance and could be used as an effective classification algorithm for gene expression profiles.
基于基因表达谱的白血病样本分类已被证明是一种有效的方法。基于这一目的,大量的智能算法被开发出来。然而,在低、高基因维度上均表现稳定、准确的算法却很少。但是它们都不能保存优化的历史信息。本文提出了一种基于多变量优化算法(MOA)的分类算法。采用不同维度的白血病基因表达谱进行验证。采用粒子群优化算法(PSO)和双层粒子群优化算法(TLPSO)进行比较。该算法具有稳定且相对准确的分类性能,可作为一种有效的基因表达谱分类算法。
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引用次数: 0
Automatic phenotyping of multi-channel Schizosaccharomyces pombe images 多通道裂糖菌pombe图像的自动表型分析
Yen-Jen Chen, Marc D. Green, Sarah A Sabatinos, S. Forsburg, Chun-Nan Hsu, Jyh-Ying Peng
Schizosaccharomyces pombe shares many genes and proteins with humans and is a good model for chromosome behavior and DNA dynamics, which can be analyzed by visualizing the behavior of fluorescently tagged proteins in vivo. However, performing a genome-wide screen for changes in such proteins requires developing methods that automate analysis of multiple images. We developed a high content analysis system to robustly segment transmitted illumination images, extract cell and nucleus boundaries, and quantitatively characterize the fluorescence within each compartment. A support vector machine (SVM) is trained to automatically judge if a cell is undergoing septation, and another two SVMs are trained to classify pombe cells into various phenotypes according to its cell shape and fluorescence signal profile. We applied this system to automatically calculate the percentages of cells of different phenotypes for 4000 S. pombe mutants.
pombe Schizosaccharomyces pombe与人类共享许多基因和蛋白质,是染色体行为和DNA动力学的良好模型,可以通过观察荧光标记蛋白质在体内的行为来分析。然而,对这些蛋白质的变化进行全基因组筛选需要开发自动分析多个图像的方法。我们开发了一个高含量的分析系统,以鲁棒分割透射照明图像,提取细胞和细胞核边界,并定量表征每个隔室内的荧光。训练一台支持向量机(SVM)自动判断细胞是否处于分裂状态,训练两台支持向量机根据细胞形状和荧光信号特征将pombe细胞分为不同的表型。我们应用该系统自动计算了4000个S. pombe突变体不同表型细胞的百分比。
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引用次数: 0
A high voltage stimulator using a low-Q class-E pulsed radiofrequency driver for animal study of relieving trigeminal neuralgia pain 一种使用低q e类脉冲射频驱动器的高压刺激器,用于缓解三叉神经痛的动物研究
Chien-Chi Lu, W. Tseng, Y. Tseng, Shi-Hang Lin, Kun-Ying Yeh, Shey-Shi Lu, C. Yen, M. Lin, Hung-Wei Chiu
In this work, an in vivo animal experiment was conducted to show that the pulsed radiofrequency (PRF) stimulation in relieving pain is effective for trigeminal neuralgia. The experiment also reveals that the 10-V stimulation is more effective than 5-V stimulation. Hence, in order to generate a high PRF voltage in a brain stimulator, a low-Q class-E amplifier is proposed to be a high voltage electrical stimulation (ES) driver by controlling the input duty cycle. The steady states of the circuit waveform are represented in two PDEs' and are numerically solved in math tool to achieve circuit parameters. When the driver was operated under the condition of Q = 1 and D = 0.8, the output peak voltage was measured up to 10 V, which is 3 times of VDD. The conversion efficiency of the PRF driver was measured 90% that measured load from 300Ω to 1.8kΩ. The efficiency of the low-Q operation is found to be better under mismatched load than in high-Q operation.
本研究通过动物体内实验,验证了脉冲射频(PRF)刺激对三叉神经痛的镇痛效果。实验还表明,10v刺激比5v刺激更有效。因此,为了在脑刺激器中产生高PRF电压,提出了一种低q的e类放大器,通过控制输入占空比作为高压电刺激(ES)驱动器。电路波形的稳态用两个偏微分方程表示,并用数学工具进行数值求解,得到电路参数。当驱动器在Q = 1, D = 0.8的条件下工作时,测得输出峰值电压高达10 V,是VDD的3倍。PRF驱动器的转换效率为90%,测量负载从300Ω到1.8kΩ。结果表明,在负载不匹配情况下,低q操作的效率优于高q操作。
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引用次数: 0
期刊
2014 IEEE International Symposium on Bioelectronics and Bioinformatics (IEEE ISBB 2014)
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