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Effects of alcalase hydrolysis combined with TGase-type glycosylation of self-assembled zein for curcumin delivery: Stability, bioavailability, and antioxidant properties.
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-02-05 DOI: 10.1016/j.ijbiomac.2025.140735
Tong Yin, Yujun Jiang, Jia Shi

In this study, zein was hydrolyzed by alcalase and conjugated to oligochitosan under transglutaminase (TGase) catalysis to construct novel self-assembly complex for the delivery of curcumin. The effects of enzyme hydrolysis and TGase-type glycosylation of zein/curcumin on the stability, bioavailability, and antioxidant properties were evaluated. The obtained glycosylated zein hydrolysate had a uniform distribution and small particle sizes. Structural analysis revealed that the primary forces within the curcumin-loaded glycosylated zein hydrolysate complex were electrostatic interactions, hydrogen bonding, and hydrophobic interactions. The prepared complex demonstrated excellent encapsulation efficiency for curcumin (82.19 %). Oligochitosan formed a protective layer around zein hydrolysate/curcumin complex through covalent binding, effectively resisting the degradation caused by gastric enzymes. This significantly increased the retention rate during the undigested stage and facilitated the release of curcumin in the intestine, thereby enhancing the bioavailability. This study offers new insights into using hydrolysis combined with TGase-type glycosylation of protein as a delivery system to protect hydrophobic nutrients.

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引用次数: 0
Bio-fabrication of chitosan-stabilized magnesium oxide nanomaterials: Investigation of photocatalytic, in vitro cytotoxicity activities and apoptosis in oral squamous carcinoma cells. 壳聚糖稳定氧化镁纳米材料的生物制备:口腔鳞癌细胞的光催化、体外细胞毒活性和凋亡研究。
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-01-15 DOI: 10.1016/j.ijbiomac.2025.139926
Chandramohan Govindasamy, Muhammad Ibrar Khan, Samer Hasan Hussein-Al-Ali, Qais Abualassal, Zead Helmi Abudayeh, Palanisamy Arulselvan, Muruganantham Bharathi, Parthasarathy Surya

A bio-fabrication approach is a novel way to develop chitosan-stabilized magnesium oxide nanomaterials (cMgO-NMs). The process involves utilizing polymeric chitosan as the reducing and stabilizing agent. The characteristics of the developed cMgO-NMs were determined using various spectroscopical techniques. Fourier-transform infrared spectroscopy (FTIR) analysis revealed crucial functional groups, Ultraviolet-visible spectroscopy (UV-Vis) spectrum showed nanomaterial development with a peak at 358 nm, and powder X-ray diffraction (PXRD) pattern confirmed a pure cubic crystalline structure. Field emission scanning electron microscopy (FE-SEM) images depicted spherical shape, while energy dispersive X-ray analysis (EDX) confirmed Mg presence. The photocatalytic efficacy of these nanomaterials in degrading dye methylene blue (MB) was examined, and the findings demonstrated the remarkable proficiency of cMgO-NMs in breaking down the dye. The cytotoxic effects of cMgO-NMs were assessed for the first time on PCI-9A and PCI-13 cancer cell lines, yielding an IC50 value of 51 μg/mL and 42 μg/mL. The cMgO-NMs treated PCI-9A and PCI-13 cancer cells morphological changes were observed via acridine orange and ethidium bromide and DAPI staining assay, and apoptotic mode of cell death was examined through flow cytometry and comet assay. Polymeric chitosan proved effective in extensive cMgO-NMs production, showing potential as an anticancer drug, although requiring further preclinical development.

生物制备方法是制备壳聚糖稳定氧化镁纳米材料的新途径。该工艺包括利用聚合壳聚糖作为还原剂和稳定剂。利用各种光谱技术测定了所研制的cMgO-NMs的特性。傅里叶变换红外光谱(FTIR)分析发现了关键的官能团,紫外可见光谱(UV-Vis)显示了纳米材料的发育,峰值在358 nm处,粉末x射线衍射(PXRD)图证实了纯立方晶体结构。场发射扫描电镜(FE-SEM)图像显示为球形,而能量色散x射线分析(EDX)证实了Mg的存在。研究了这些纳米材料在降解染料亚甲基蓝(MB)中的光催化效果,结果表明cMgO-NMs在降解染料方面具有显著的能力。首次评估了cMgO-NMs对PCI-9A和PCI-13癌细胞的细胞毒作用,其IC50值分别为51 和42 μg/mL。通过吖啶橙、溴化乙啶和DAPI染色观察cMgO-NMs对PCI-9A和PCI-13癌细胞的形态学改变,通过流式细胞术和彗星法检测细胞凋亡模式。聚合物壳聚糖被证明在大量的cgo - nms生产中是有效的,显示出作为抗癌药物的潜力,尽管需要进一步的临床前开发。
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引用次数: 0
Optimization of ultrasound-assisted enzymatic hydrolysis Zophobas morio protein and its protective effects against H2O2-induced oxidative stress in RAW264.7 cells.
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-01-20 DOI: 10.1016/j.ijbiomac.2025.140111
Ha-Seong Cho, Ju-Hwi Park, Ibukunoluwa Fola Olawuyi, Ju-Ock Nam, Won-Young Lee

Zophobas morio protein (ZMP) is a promising protein resource with notable biological properties, and its hydrolysis could unlock enhanced bioactivities. This study investigated ultrasound-assisted enzymatic hydrolysis (UAEH) of ZMP using different enzymes (Alcalase, Neutrase, and Protamex) to determine its effect on the degree of hydrolysis (DH) compared to enzymatic hydrolysis (EH). UAEH showed greater hydrolysis efficiency than EH, with Alcalase exhibiting the highest DH. Response surface methodology (RSM) was applied to optimize UAEH conditions for Zophobas morio protein hydrolysate (ZMPH). Optimal conditions for producing ZMPH with the maximum DH were a substrate concentration of 3.52 % (w/v), enzyme to substrate ratio of 7.64 % (v/v), and pH of 8.35. Under the optimal condition, the maximum DH was 25.03 %. In addition, significant structural changes in the optimized ZMPH compared to ZMP were identified, showing decreased α-helix and β-sheet content, with increased β-turn and unordered coil. Moreover, the optimized ZMPH demonstrated significantly improved ABTS antioxidant activity and attenuated H2O2-induced cell death in RAW264.7 cells compared to ZMP, which was attributed to better mitigation of ROS production. These findings provide an effective enzymatic hydrolysis method for producing ZMPH with significant antioxidant activity, demonstrating the potential of ultrasound-assisted hydrolysis in enhancing the bioactivity of insect proteins.

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引用次数: 0
The preparation of methacrylated oxidized konjac glucomannan hydrogel system and its treatment for diabetic wounds. 甲基丙烯酸氧化魔芋葡甘露聚糖水凝胶体系的制备及其对糖尿病创面的治疗。
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-01-17 DOI: 10.1016/j.ijbiomac.2025.140005
Xi Pan, Qida Zong, Bo Fu, Ye Wang, Xinke Feng, Wei Sun, Yinglei Zhai

The management of diabetic wounds has become an important task for the public health system. Hydrogels are highly anticipated as modern wound dressings for the treatment of diabetic wounds, hence we have prepared a MOK-Gel using methacrylated oxidized konjac glucomannan (MOK) crosslinked with acrylamide (AM). On this basis, we have incorporated drugs such as UiO-66 loaded with sodium ferulate (SF) and deferoxamine (DFO) to develop the hydrogel wound dressing DUS@MOK-Gel (a hydrogel composed of methacrylated oxidized konjac glucomannan, loaded with DFO and UiO-66 loaded with sodium ferulate). It not only has excellent physical properties, including swelling capacity, moisture retention, and water vapor permeability; but also possesses bioactivity functions such as antioxidant, anti-inflammatory, macrophage polarization regulation, promotion of anti-inflammatory factor release, and angiogenesis to accelerate the healing of diabetic wounds. Therefore, DUS@MOK-Gel has great development prospects and market value in the field of diabetic wound treatment.

糖尿病创面的管理已成为公共卫生系统的一项重要任务。水凝胶作为治疗糖尿病伤口的现代伤口敷料备受期待,因此我们用甲基丙烯酸氧化魔芋葡甘露聚糖(MOK)与丙烯酰胺(AM)交联制备了一种MOK-凝胶。在此基础上,我们结合负载阿魏酸钠(SF)和去铁胺(DFO)等药物,研制出水凝胶伤口敷料DUS@MOK-Gel(一种由甲基丙烯酸氧化魔芋葡甘露聚糖,负载DFO和负载阿魏酸钠的UiO-66组成的水凝胶)。它不仅具有优异的物理性能,包括膨胀能力、保湿性和透气性;同时还具有抗氧化、抗炎、调节巨噬细胞极化、促进抗炎因子释放、促进血管生成等生物活性功能,加速糖尿病创面愈合。因此,DUS@MOK-Gel在糖尿病创面治疗领域具有很大的发展前景和市场价值。
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引用次数: 0
Interfacial properties of whey protein hydrolysates monitored by quartz crystal microbalance with dissipation.
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-01-28 DOI: 10.1016/j.ijbiomac.2025.140368
Yueling Tian, Manyan Qiu, Yu Shen, Yaping Zheng, Xinyan Yang, Wei Zhang, Yujun Jiang

Whey protein hydrolysate (WPH) can be used to develop hypoallergenic foods. However, the stabilization mechanism of WPH-stabilized emulsion is not fully understood. Here, a real-time quartz crystal microbalance with dissipation monitoring (QCM-D) was used in conjunction with a rheometer to investigate the interfacial properties of WPH. Initially, the properties of WPH with different (6 %, 8 %, 10 %, 12 % and 14 %) degree of hydrolysis (DH) were investigated. 8 %-WPH demonstrated superior emulsifying (11.49 m2/g, 81.34 min) and foaming properties (14.00 %, 7.78 %). Subsequently, the stability of different WPH-stabilized emulsions were examined. 8 %-WPH emulsion exhibited the lowest centrifugal precipitation rate (4.50 %) and Turbiscan stability index (2.24). Additionally, the 8 %-WPH promoted the adsorption and retention of molecules at the interface, which effectively reduced the interfacial tension. QCM-D measurement further proved that the 8 %-WPH possessed excellent adsorption mass and viscoelasticity. Finally, we characterized the interface-adsorbed WPH. The 8 %-WPH exhibited the highest surface hydrophobicity (1072.60) and flexibility (0.22). Notably, the 8 %-WPH showed the highest β-sheet (41.11 %). This led to stronger interactions between neighboring interfacial WPH molecules, which protected the emulsion droplets from destabilizing factors. Nevertheless, excessive hydrolysis (10 %-14 %) caused WPH molecules aggregation, which consequently diminished the viscoelasticity of the interfacial film and the emulsion stability.

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引用次数: 0
Pretreatment of enzymatic hydrolysis lignin based on deep eutectic solvent containing a reversibly-soluble base.
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-01-28 DOI: 10.1016/j.ijbiomac.2025.140452
Hui-Jun Liu, Da-Yu Sun, Lei Yang, Guang-Hui Ma, Rong-Ying Xia, Zi-Qi Wang, Ming-Zhu Yao, Li-Jing Gao, Rui-Ping Wei, Xiao-Mei Pan, Guo-Min Xiao

The pretreatment with green deep eutectic solvents (DESs) is conducive to realizing the high-efficiency utilization of lignin at a low cost. In this study, an innovative choline chloride/urea/calcium hydroxide (ChCl/UR/Ca(OH)2) DES containing a reversibly-soluble base Ca(OH)2 was developed for the pretreatment of enzymatic hydrolysis lignin (EHL). The lignin pretreatment effects of the proposed ChCl/UR/Ca(OH)2 DES were compare with a series of DESs. The results indicated that ChCl/UR/20 % Ca(OH)2 with a reversibly-soluble base addition of 20 % was permitted to achieve the optimal recovery yield of 81.067 % under mild conditions (80 °C, 7 h). The physical and chemical structure, molecular weight, thermal stability, content of phenolic hydroxyl and carboxyl groups, and recycling performance of DES were compared between ChCl/UR-L and ChCl/UR/20 % Ca(OH)2-L. The results showed that ChCl/UR/20 % Ca(OH)2-L retained the lignin skeleton structure and possessed preferable thermal stability and antioxidant activity, which was mainly attributed to the homogeneous molecular structure and abundant phenolic hydroxyl group contents. ChCl/UR/20 % Ca(OH)2 was more advantageous for recycling, maintaining a lignin recovery yield of 57.400 % after 5 cycles, which was higher than that of most acidic and neutral DESs for regenerating lignin. This work provides a valuable reference on the valorization of lignin by using renewable DES.

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引用次数: 0
Effects of isolation methods on physicochemical properties of defatted starch from the acorn (Quercus brantii).
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-01-23 DOI: 10.1016/j.ijbiomac.2025.140300
Sepideh Erfan, Roya Abka-Khajouei, Javad Keramat, Nasser Hamdami

This study explores the innovative combined effects of alkaline isolation with ultrasound pretreatment on the physicochemical properties of acorn (Quercus brantii) starch. The optimal pH for maximizing the yield of alkaline-isolated acorn starch (AAS) was determined, followed by comparison with alkaline-isolated defatted acorn starch (ADAS), ultrasound-pretreated acorn starch (UAS), and ultrasound-pretreated defatted acorn starch (UDAS). The results demonstrated substantial improvements in yield and purity, with the highest yield (68.97 ± 0.16 %) achieved at pH 9. ADAS showed high purity, with protein and fat contents of 1.82 ± 0.07 % and 0.025 ± 0.02 %, respectively. UDAS exhibited superior swelling power, solubility, and turbidity, indicating enhanced functional properties. Scanning Electron Microscopy (SEM) revealed variations in granule sizes across treatments, from 12.42 μm (ADAS) to 10.72 μm (UDAS). X-ray diffraction analysis showed C-type patterns with crystallinity ranging from 31.25 % (ADAS) to 26 % (UAS). Thermal analysis demonstrated UDAS had the highest peak viscosity and lowest thermal parameters. Texture analysis indicated that AAS formed a softer gel, while ADAS displayed greater hardness and gumminess. These findings highlight the effectiveness of combining alkaline isolation with ultrasound pretreatment to improve acorn starch quality for sustainable applications in food and biotechnology.

{"title":"Effects of isolation methods on physicochemical properties of defatted starch from the acorn (Quercus brantii).","authors":"Sepideh Erfan, Roya Abka-Khajouei, Javad Keramat, Nasser Hamdami","doi":"10.1016/j.ijbiomac.2025.140300","DOIUrl":"10.1016/j.ijbiomac.2025.140300","url":null,"abstract":"<p><p>This study explores the innovative combined effects of alkaline isolation with ultrasound pretreatment on the physicochemical properties of acorn (Quercus brantii) starch. The optimal pH for maximizing the yield of alkaline-isolated acorn starch (AAS) was determined, followed by comparison with alkaline-isolated defatted acorn starch (ADAS), ultrasound-pretreated acorn starch (UAS), and ultrasound-pretreated defatted acorn starch (UDAS). The results demonstrated substantial improvements in yield and purity, with the highest yield (68.97 ± 0.16 %) achieved at pH 9. ADAS showed high purity, with protein and fat contents of 1.82 ± 0.07 % and 0.025 ± 0.02 %, respectively. UDAS exhibited superior swelling power, solubility, and turbidity, indicating enhanced functional properties. Scanning Electron Microscopy (SEM) revealed variations in granule sizes across treatments, from 12.42 μm (ADAS) to 10.72 μm (UDAS). X-ray diffraction analysis showed C-type patterns with crystallinity ranging from 31.25 % (ADAS) to 26 % (UAS). Thermal analysis demonstrated UDAS had the highest peak viscosity and lowest thermal parameters. Texture analysis indicated that AAS formed a softer gel, while ADAS displayed greater hardness and gumminess. These findings highlight the effectiveness of combining alkaline isolation with ultrasound pretreatment to improve acorn starch quality for sustainable applications in food and biotechnology.</p>","PeriodicalId":333,"journal":{"name":"International Journal of Biological Macromolecules","volume":" ","pages":"140300"},"PeriodicalIF":7.7,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143035450","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Label-free electrochemical immunoassay for ultra-sensitive detection of PSA utilizing gold nanoparticles/polyhedral hollow CoCu bimetallic sulfide nanostructure as a dual signal amplification platform.
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-01-28 DOI: 10.1016/j.ijbiomac.2025.140307
Mozhgan Shohani, Marzieh Sadeghi, Hosna Ehzari

This study introduces the development of a highly sensitive label-free electrochemical immunosensor specifically designed to detect prostate-specific antigen (PSA). A glassy carbon electrode (GCE) coated with Au nanoparticles/polyhedral hollow CoCu bimetallic sulfide (CuCo2S4) was employed as a sensing interface for the fixation of the monoclonal anti-PSA antibody. The nanoarchitectures enhanced the capacity for loading prostate-specific antibodies (Ab) and effectually boosted electrical conductivity leading to enhance the electrochemical signal and greater sensitivity for the detection of PSA. The electrochemical behavior of the engineered sensor was researched via cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS), and differential pulse voltammetry (DPV). The response of the fabricated immunosensor manifested a linearized correlation with PSA concentration, spanning from 50.0 fg/ml to 500.0 ng/ml, with a minimal detection limit (DPV: 19.0 fg/ml, EIS: 14.0 fg/ml) and superior stability. The morphological and structural features of the engineered nanomaterials were analyzed using a range of techniques, including field emission scanning electron microscopy (FESEM), energy dispersive X-ray analysis (EDX), X-ray diffraction (XRD), and Fourier transform infrared spectroscopy (FTIR). The proposed immunosensor was utilized for the meticulous and ultra-sensitive analysis of PSA levels in serum specimens, providing results that align satisfactorily with those from the enzyme-linked immunosorbent assay (ELISA) the benchmark protocol. In conclusion, these outcomes underscore the potential utility of the developed immunosensor for prostate cancer screening in its initial stages.

{"title":"Label-free electrochemical immunoassay for ultra-sensitive detection of PSA utilizing gold nanoparticles/polyhedral hollow CoCu bimetallic sulfide nanostructure as a dual signal amplification platform.","authors":"Mozhgan Shohani, Marzieh Sadeghi, Hosna Ehzari","doi":"10.1016/j.ijbiomac.2025.140307","DOIUrl":"10.1016/j.ijbiomac.2025.140307","url":null,"abstract":"<p><p>This study introduces the development of a highly sensitive label-free electrochemical immunosensor specifically designed to detect prostate-specific antigen (PSA). A glassy carbon electrode (GCE) coated with Au nanoparticles/polyhedral hollow CoCu bimetallic sulfide (CuCo<sub>2</sub>S<sub>4</sub>) was employed as a sensing interface for the fixation of the monoclonal anti-PSA antibody. The nanoarchitectures enhanced the capacity for loading prostate-specific antibodies (Ab) and effectually boosted electrical conductivity leading to enhance the electrochemical signal and greater sensitivity for the detection of PSA. The electrochemical behavior of the engineered sensor was researched via cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS), and differential pulse voltammetry (DPV). The response of the fabricated immunosensor manifested a linearized correlation with PSA concentration, spanning from 50.0 fg/ml to 500.0 ng/ml, with a minimal detection limit (DPV: 19.0 fg/ml, EIS: 14.0 fg/ml) and superior stability. The morphological and structural features of the engineered nanomaterials were analyzed using a range of techniques, including field emission scanning electron microscopy (FESEM), energy dispersive X-ray analysis (EDX), X-ray diffraction (XRD), and Fourier transform infrared spectroscopy (FTIR). The proposed immunosensor was utilized for the meticulous and ultra-sensitive analysis of PSA levels in serum specimens, providing results that align satisfactorily with those from the enzyme-linked immunosorbent assay (ELISA) the benchmark protocol. In conclusion, these outcomes underscore the potential utility of the developed immunosensor for prostate cancer screening in its initial stages.</p>","PeriodicalId":333,"journal":{"name":"International Journal of Biological Macromolecules","volume":" ","pages":"140307"},"PeriodicalIF":7.7,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143062754","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
PmiProPred: A novel method towards plant miRNA promoter prediction based on CNN-Transformer network and convolutional block attention mechanism.
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-02-03 DOI: 10.1016/j.ijbiomac.2025.140630
Haibin Li, Jun Meng, Zhaowei Wang, Yushi Luan

It is crucial to understand the transcription mechanisms of miRNAs, especially considering the presence of peptides encoded by miRNAs. Since promoters function as the switch for gene transcription, precisely identifying these regions is essential for fully annotating miRNA transcripts. Nonetheless, existing computational methods still have room for improvement in the characterization of promoter regions. Here, we present PmiProPred, an advanced tool designed for predicting plant miRNA promoters from a wide spectrum of genomes. It consists of two core components: multi-stream deep feature extraction (MsDFE) and multi-stream deep feature refinement (MsDFR). The MsDFE utilizes Transformer and CNN to gather multi-view features, while the MsDFR focuses on aligning and refining them using channel and spatial attention mechanisms. Ultimately, a multi-layer perceptron is employed to accomplish the miRNA promoter identification task. Across three independent testing datasets, PmiProPred achieves accuracies of 94.630%, 96.659%, and 92.480%, respectively, substantially surpassing the latest methods. Additionally, PmiProPred is employed to identify potential core promoters in the upstream 2-kb regions of intergenic miRNAs in five plant species. We further conduct cis-regulatory elements mining on the predicted promoters and perform an in-depth analysis of the identified motifs. Altogether, PmiProPred is a robust and effective tool for discovering plant miRNA promoters.

{"title":"PmiProPred: A novel method towards plant miRNA promoter prediction based on CNN-Transformer network and convolutional block attention mechanism.","authors":"Haibin Li, Jun Meng, Zhaowei Wang, Yushi Luan","doi":"10.1016/j.ijbiomac.2025.140630","DOIUrl":"10.1016/j.ijbiomac.2025.140630","url":null,"abstract":"<p><p>It is crucial to understand the transcription mechanisms of miRNAs, especially considering the presence of peptides encoded by miRNAs. Since promoters function as the switch for gene transcription, precisely identifying these regions is essential for fully annotating miRNA transcripts. Nonetheless, existing computational methods still have room for improvement in the characterization of promoter regions. Here, we present PmiProPred, an advanced tool designed for predicting plant miRNA promoters from a wide spectrum of genomes. It consists of two core components: multi-stream deep feature extraction (MsDFE) and multi-stream deep feature refinement (MsDFR). The MsDFE utilizes Transformer and CNN to gather multi-view features, while the MsDFR focuses on aligning and refining them using channel and spatial attention mechanisms. Ultimately, a multi-layer perceptron is employed to accomplish the miRNA promoter identification task. Across three independent testing datasets, PmiProPred achieves accuracies of 94.630%, 96.659%, and 92.480%, respectively, substantially surpassing the latest methods. Additionally, PmiProPred is employed to identify potential core promoters in the upstream 2-kb regions of intergenic miRNAs in five plant species. We further conduct cis-regulatory elements mining on the predicted promoters and perform an in-depth analysis of the identified motifs. Altogether, PmiProPred is a robust and effective tool for discovering plant miRNA promoters.</p>","PeriodicalId":333,"journal":{"name":"International Journal of Biological Macromolecules","volume":" ","pages":"140630"},"PeriodicalIF":7.7,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143254238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Oil-in-water Pickering emulsions with Buriti vegetable oil stabilized with cellulose nanofibrils: Preparation, stability and antimicrobial properties.
IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-04-01 Epub Date: 2025-02-07 DOI: 10.1016/j.ijbiomac.2025.140233
Greiciele S da Ferreira, Daniel J da Silva, Éder R de Oliveira, Derval S Rosa

Mauritia flexuosa (Buriti) vegetable oil (OV) has attracted technological interest in various sectors, including pharmaceuticals, food, and beverages, because of its excellent antioxidant activity. The active OV components are fatty compounds, and stability is required for proper application. In this work, we investigated OV-in-water Pickering emulsions stabilized by cellulose nanofibrils (CNF). CNF is sustainable, economically viable, and environmentally friendly, and it is suitable for developing products in an eco-friendly way. The factorial design of experiments (DoE) indicates that the amount of CNF and the homogenization time significantly affect the emulsion, preventing coalescence over 30 days. Fourier-transform Raman spectroscopy (FT-Raman) and Fourier-transform infrared spectroscopy (FTIR) show that CNF stabilizes the OV droplets through induced dipole-dipole interactions and hydrogen bonds. Rheological analysis was relevant to the relationship between internal microstructure strength and viscous flow behavior of the emulsions. A novel approach enabled the identification of the CNF stabilization mechanism in the emulsion system via fluorescence microscopy. Diameter distribution measurements and steady-state rheological tests indicate that the emulsions have good stability at room temperature and suitable steady-state viscosity for food applications and beverage products as they show pronounced shear thinning behavior for cream and lotion skin care products.

{"title":"Oil-in-water Pickering emulsions with Buriti vegetable oil stabilized with cellulose nanofibrils: Preparation, stability and antimicrobial properties.","authors":"Greiciele S da Ferreira, Daniel J da Silva, Éder R de Oliveira, Derval S Rosa","doi":"10.1016/j.ijbiomac.2025.140233","DOIUrl":"10.1016/j.ijbiomac.2025.140233","url":null,"abstract":"<p><p>Mauritia flexuosa (Buriti) vegetable oil (OV) has attracted technological interest in various sectors, including pharmaceuticals, food, and beverages, because of its excellent antioxidant activity. The active OV components are fatty compounds, and stability is required for proper application. In this work, we investigated OV-in-water Pickering emulsions stabilized by cellulose nanofibrils (CNF). CNF is sustainable, economically viable, and environmentally friendly, and it is suitable for developing products in an eco-friendly way. The factorial design of experiments (DoE) indicates that the amount of CNF and the homogenization time significantly affect the emulsion, preventing coalescence over 30 days. Fourier-transform Raman spectroscopy (FT-Raman) and Fourier-transform infrared spectroscopy (FTIR) show that CNF stabilizes the OV droplets through induced dipole-dipole interactions and hydrogen bonds. Rheological analysis was relevant to the relationship between internal microstructure strength and viscous flow behavior of the emulsions. A novel approach enabled the identification of the CNF stabilization mechanism in the emulsion system via fluorescence microscopy. Diameter distribution measurements and steady-state rheological tests indicate that the emulsions have good stability at room temperature and suitable steady-state viscosity for food applications and beverage products as they show pronounced shear thinning behavior for cream and lotion skin care products.</p>","PeriodicalId":333,"journal":{"name":"International Journal of Biological Macromolecules","volume":" ","pages":"140233"},"PeriodicalIF":7.7,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143373513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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International Journal of Biological Macromolecules
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