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Genomic analysis of sugar transporter genes in peanut (Arachis hypogaea): Characteristic, evolution and expression profiles during development and stress 花生糖转运基因的基因组分析:发育和胁迫过程中的特征、进化和表达谱
Q3 Agricultural and Biological Sciences Pub Date : 2022-10-01 DOI: 10.1016/j.ocsci.2022.11.002
Zhijun Xu , Lei Xu , Xiaowen Hu

Peanut (Arachis hypogaea L.) is an economically significant crop with aerial cleistogamous flowers and subterranean geocarpic fruit (pods). The formation of peanut pod requires movement of the embryo from air to ground and then development in the soil, which is a complex biological process involving transport and accumulation of sugars. Sugar transport proteins (STP) mediate the transport of monosaccharides in various physiological processes, including fertilization, ovary formation, and seed development. In this study, a total of 36 AhSTP genes (AhSTP1–36) containing the conserved sugar_tr motif were identified in the A. hypogaea genome. Phylogenetic analysis revealed that AhSTP genes were classified into four clades, and the arrangement of motifs in AhSTP proteins was similar within clades. Synteny analysis revealed that segmental duplication events have played an important role in the expansion of STP genes in peanut, and chromosome rearrangements might have facilitated the exchange of STP genes between the A and B sub-genomes. Transcriptome analyses revealed that the expression patterns of AhSTP genes varied among tissues. Hormone and abiotic stress treatments could up-regulate or down-regulate the expression of AhSTP genes, and low temperature had a major effect on the expression of most AhSTP genes. Four AhSTP genes (AhSTP3, AhSTP9, AhSTP19, and AhSTP28) were specifically expressed in the pod, indicating that these genes might be involved in pod formation and development in peanut. The unique expression of these four genes during pod construction and development was confirmed in two different type cultivars using quantitative real-time PCR analysis. Our findings provide new insights into the STP gene family in peanut and will aid future functional studies of AhSTP genes.

花生(arachhis hypogaea L.)是一种具有空中闭花受精和地下果实(豆荚)的重要经济作物。花生豆荚的形成需要胚从空气中移动到地面,然后在土壤中发育,这是一个复杂的生物过程,涉及糖的运输和积累。糖转运蛋白(STP)在多种生理过程中介导单糖的转运,包括受精、子房形成和种子发育。在本研究中,共鉴定出36个含有保守的sugar_tr基序的AhSTP基因(AhSTP1-36)。系统发育分析表明,AhSTP基因可划分为4个支系,支系内AhSTP蛋白的基序排列相似。同源性分析表明,区段重复事件在花生STP基因扩增中发挥了重要作用,染色体重排可能促进了STP基因在A和B亚基因组之间的交换。转录组分析显示,AhSTP基因的表达模式在不同组织中存在差异。激素和非生物胁迫处理可上调或下调AhSTP基因的表达,低温对大多数AhSTP基因的表达有主要影响。4个AhSTP基因(AhSTP3、AhSTP9、AhSTP19和AhSTP28)在花生荚中特异性表达,表明这些基因可能参与花生荚的形成和发育。通过实时荧光定量PCR分析,证实了这4个基因在两种不同类型品种豆荚构建和发育过程中的独特表达。我们的发现为花生STP基因家族提供了新的见解,并将有助于未来AhSTP基因的功能研究。
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引用次数: 1
Research progresses and prospects of medicated oil dual-purpose crop safflower based on patent mining 基于专利开采的药油两用作物红花研究进展与展望
Q3 Agricultural and Biological Sciences Pub Date : 2022-10-01 DOI: 10.1016/j.ocsci.2022.10.001
Lanyu Zhou , Yuhang Yan , Yue Wang , Qinghua Wu , Jie Yan , Jin Pei

Safflower is widely cultivated and used as a dual-purpose medicinal oil worldwide. This research used the incoPat patent database to search the global safflower patents for nearly 20 years, aiming to reveal the development process and current situation of the safflower industry in China and around the world by analyzing patent application trends, patent technology characteristics, advantageous industries and regions, patent quality, etc. The analysis shows that safflower patent applications are generally increasing, and the period 2010-2016 is characterized by the rapid development of patent applications. The technical features of global patents are mainly concentrated in pharmaceutical preparations, cosmetics, food and health care, various beverages, animal feed, safflower cultivation and harvesting equipment, and safflower seed oil. During the rapid development of patent applications, safflower was further developed in cosmetics, edible oil, and harvesting equipment. In addition, patent applications in rheumatism and bone diseases have increased, with the potential for development. China is the leading region for researching and developing medicinal safflower patents, especially Shandong and Henan provinces. Foreign patents are more focused on the value development of safflower seed oil in food and chemicals. Compared to the major countries and organizations that apply for safflower patents on a global scale, the quality of Chinese safflower patents is medium, and more awareness of patent protection is required. This paper provides suggestions for the subsequent development of the safflower industry, summarizes and analyzes the development trend of safflower patents, and provides new ideas to obtain innovative patent results.

红花在世界范围内被广泛种植和用作双重用途的药用油。本研究利用incoPat专利数据库对全球近20年的红花专利进行检索,旨在通过对专利申请趋势、专利技术特征、优势产业和地区、专利质量等方面的分析,揭示中国及世界红花产业的发展历程和现状。分析表明,红花专利申请量总体呈增长趋势,2010-2016年为专利申请量快速增长的时期。全球专利的技术特征主要集中在医药制剂、化妆品、食品保健、各种饮料、动物饲料、红花栽培采收设备、红花籽油等领域。在专利申请快速发展的过程中,红花在化妆品、食用油、收获设备等方面得到了进一步的开发。此外,风湿病和骨病的专利申请也有所增加,具有发展潜力。中国是药用红花专利研究和开发的领先地区,特别是山东和河南。国外专利更多地集中在红花籽油在食品和化工领域的价值开发上。与全球范围内申请红花专利的主要国家和组织相比,中国红花专利的质量处于中等水平,专利保护意识有待提高。本文为红花产业的后续发展提出建议,对红花专利的发展趋势进行总结分析,为获得创新专利成果提供新的思路。
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引用次数: 0
Regulatory mechanisms of rapeseed petal color formation: Current research status and future perspectives 油菜籽花瓣颜色形成的调控机制:研究现状及展望
Q3 Agricultural and Biological Sciences Pub Date : 2022-10-01 DOI: 10.1016/j.ocsci.2022.11.005
Shijun Li, Tao Chang, Xi Li, Zechuan Peng, Chunyun Guan, Mei Guan

Flower color, an important rapeseed character, has great practical value and research significance. It has become an area of intensive research in recent years. This paper summarizes the latest research progress on rape flower color in terms of variety, source, pigment composition, formation mechanism, and omics. Moreover, it provides an overview of rape flower color breeding and omics.

花色是油菜籽的重要性状,具有重要的实用价值和研究意义。近年来,它已成为一个研究热点。本文从油菜花色的品种、来源、色素组成、形成机制、组学等方面综述了油菜花色的最新研究进展。此外,还对油菜花色育种和组学研究进行了综述。
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引用次数: 0
Preliminary investigation and detection based on loop-mediated isothermal amplification (LAMP) of phytoplasmas associated with diseases in B. napus L. 环介导等温扩增(LAMP)技术对甘蓝型油菜植物原体相关病害的初步调查与检测
Q3 Agricultural and Biological Sciences Pub Date : 2022-10-01 DOI: 10.1016/j.ocsci.2022.12.001
Yancheng Wen, Shufen Zhang, Junping He, Dongfang Cai, Jiacheng Zhu, Jianping Wang, Jinhua Cao, Kun Hu, Lei Zhao, Dongguo Wang, Yizi Liu

In the last decade, some disease occurred on our experimental farms that had caused serious losses. They were not caused by fungi, bacteria or viruses. By loop-mediated isothermal amplification (LAMP) technique, the detection results pointed to the possible pathogen as phytoplasma. The investigation results implied that phytoplasmas could cause more than 13 kinds of symptoms in almost all parts of plants in B. napus L., including witches’ broom, multi-stems, aggregate main inflorescences, and flat stems. The incidences of these phytoplasma-associated diseases in our experimental farms rose from 1.61% in 2010 to 6.00% in 2021. Some phytoplasma infected plants died without any growing points. These studies would be helpful for detecting phytoplasmas diseases, selecting disease resistant germplasm and improving varieties with disease resistances in B. napus L.

在过去的十年里,我们的实验农场发生了一些疾病,造成了严重的损失。它们不是由真菌、细菌或病毒引起的。通过环介导等温扩增(LAMP)技术检测结果表明,病原菌可能为植原体。结果表明,植物原体可在甘蓝型油菜植株的几乎所有部位引起13种以上的症状,包括丛枝状、多茎状、主花序聚集状和平茎状。在我们的实验农场,这些植物原体相关疾病的发病率从2010年的1.61%上升到2021年的6.00%。一些被植原体感染的植物没有生长点而死亡。这些研究将有助于油菜病害的检测、抗病种质的选择和抗病品种的改良。
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引用次数: 0
Origin and evolution of fatty acid desaturase genes in oil crop Brassica napus 油菜脂肪酸去饱和酶基因的起源与进化
Q3 Agricultural and Biological Sciences Pub Date : 2022-10-01 DOI: 10.1016/j.ocsci.2022.10.002
Wei Zhao , Lunwen Qian , Mei Guan , Jun Liu , Chunyun Guan

Fatty acid (FA) desaturases, as the key enzymes in lipid metabolism, are responsible for biosynthesis of the unsaturated fatty FAs, which play important roles in maintaining cell membrane integrity and multiple stress responses. Although attention has been drawn to some plant FA desaturase genes, their global landscape in oil crops is still lacking. Here, we performed systematic characterization and phylogenomic synteny network analyses of the FA desaturase gene family in polyploid oil crop B. napus and other 54 species covering major streptophyte lineages. A total of 1653 FA desaturase genes were identified from these plant genomes. Based on the broad-scale family phylogeny and functional domains, we proposed a unified eight-group classification system for angiosperm FA desaturases, and found that the origin of genes responsible for FA desaturation evolved early and some genes were absent in different species. Phylogenomic analyses revealed deeply conserved syntenic relationships within each of the eight FA desaturase groups. B. napus contains up to 93 FA desaturase genes from the eight groups. Recurrent duplication events in Brassicaceae contributed to the expansion of FA desaturase genes in B. napus, leading to further functional diversification. These FA desaturase genes exhibited spatio-temporal specific expression patterns in different tissues of B. napus, and a set of FA desaturase genes seem to be orchestrated by key transcriptional factors during seed development, such as zf-HD, B3, GATA3, PEI1, NFYA7, YAB1 and YAB2. Altogether, our data have inferred the evolutionary trajectory of this important gene family across distinct plant lineages, providing theoretical basis for future manipulation of FA desaturase genes to improve the seed oil quality of B. napus.

脂肪酸去饱和酶是脂质代谢的关键酶,负责生物合成不饱和脂肪酸,在维持细胞膜完整性和多种应激反应中发挥重要作用。虽然一些植物FA去饱和酶基因已经引起了人们的关注,但它们在油料作物中的全球分布仍然缺乏。本文对多倍体油料作物甘蓝型油菜(B. napus)和其他54种主要链植物谱系的FA去饱和酶基因家族进行了系统表征和系统基因组同源性网络分析。从这些植物基因组中共鉴定出1653个FA去饱和酶基因。基于广泛的家族系统发育和功能域,我们提出了被子植物FA去饱和酶的统一8类分类系统,并发现负责FA去饱和的基因起源较早,并且在不同物种中缺失一些基因。系统基因组学分析揭示了8个FA去饱和酶组之间的高度保守的共生性关系。甘蓝型油菜含有多达93个来自8个群体的FA去饱和酶基因。油菜科植物中反复发生的重复事件促进了甘蓝型油菜中FA去饱和酶基因的扩增,导致其功能进一步多样化。这些FA去饱和酶基因在油菜不同组织中表现出时空特异性的表达模式,其中一组FA去饱和酶基因似乎在种子发育过程中受到zf-HD、B3、GATA3、PEI1、NFYA7、YAB1和YAB2等关键转录因子的调控。总之,我们的数据推断了这一重要基因家族在不同植物谱系中的进化轨迹,为未来操纵FA去饱和酶基因以提高甘蓝型油菜籽油品质提供了理论依据。
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引用次数: 1
Absolute quantitative detection of genetically modified soybean MON87708×MON89788 with stacked traits by digital polymerase chain reaction 数字聚合酶链反应技术对堆叠性状转基因大豆MON87708×MON89788的绝对定量检测
Q3 Agricultural and Biological Sciences Pub Date : 2022-10-01 DOI: 10.1016/j.ocsci.2022.11.001
Junyi Xu , Xin Li , Jinglian Bai , Ying Liu , Shaojie Wang , Yueting Liu , Chunguang Yang

The main advantage of digital PCR (dPCR) is that it facilitates absolute quantification of the target without reference to the standard/calibration curve. Crystal droplet dPCR has a three-color staining detection function, which enables multiplex PCR reaction. In this study, this technique was used to establish triple dPCR detection for the genetically modified soybean MON87708 ​× ​MON89788 with stacked traits. Specific absolute quantitative detection was accomplished for the genomic DNA extracted from the homogenized seeds of GM stack MON87708 ​× ​MON89788 soybean. Our results can serve as a reference for the absolute quantitative detection of stacked events of genetically modified crops.

数字PCR (dPCR)的主要优点是便于对目标物进行绝对定量,而无需参考标准/校准曲线。结晶液滴dPCR具有三色染色检测功能,可实现多重PCR反应。本研究利用该技术建立了堆叠性状转基因大豆MON87708 × MON89788的三重dPCR检测方法。对转基因大豆MON87708 × MON89788种子均质化提取的基因组DNA进行了特异性绝对定量检测。研究结果可为转基因作物堆叠事件的绝对定量检测提供参考。
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引用次数: 0
Exploration and application of agriculture-tourism technologies based on rape flowers in rural revitalization of China 油菜花农业旅游技术在中国乡村振兴中的探索与应用
Q3 Agricultural and Biological Sciences Pub Date : 2022-07-01 DOI: 10.1016/j.ocsci.2022.08.002
Jun Li, Zhongkui Han, Mengzhu Xian

Oilseed rape is an ideal model crop of great significance for research on agricultural-tourism integration and multi-functional development of agriculture. This paper explores the application of technologies for agricultural tourism based on rape flowers in rural revitalization of China. It includes perspectives of technologies for colorful rape flowers, flowering time regulation, multi-season blooming and farm landscape, aiming to further utilize the industrial potential of the multiple functions of agricultural crops, and promote the development of agriculture and rural economy to serve the strategic need of rural revitalization in China.

油菜是一种理想的模式作物,对研究农旅融合和农业多功能发展具有重要意义。探讨油菜花农业旅游技术在中国乡村振兴中的应用。从油菜花彩绘技术、花期调控技术、多季开花技术、农场景观技术等方面进行研究,旨在进一步发挥农作物多种功能的产业潜力,促进农业和农村经济的发展,服务于中国乡村振兴的战略需要。
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引用次数: 6
Genome-wide identification and expression profiling of the YUCCA gene family in Brassica napus 甘蓝型油菜YUCCA基因家族的全基因组鉴定和表达谱分析
Q3 Agricultural and Biological Sciences Pub Date : 2022-07-01 DOI: 10.1016/j.ocsci.2022.07.001
Ka Zhang , Jinfang Zhang , Cheng Cui , Liang Chai , Benchuan Zheng , Jun Jiang , Haojie Li , Jinxing Tu

Auxin is essential for plant growth and development, also closely related to plant architecture. YUCCA (YUC) proteins catalyse the rate-limiting step for endogenous auxin biosynthesis. In this study, we identified 57 BnYUC genes in Brassica napus (rapeseed) genome, located on 17 chromosomes. Among them, A09 chromosome contained the most BnYUCs as 6. Phylogenetic tree showed that all BnYUC members were divided into 2 evolutionary clusters, including 7 sub-groups. Among the sub-groups, CladeⅠ-C consisted 20 members, evolved independently from Arabidopsis thaliana, and motif 10 was unique. Genomic collinearity analysis showed that YUC collinear gene pairs widely existed in Brassica species, indicating that this family has a high retention rate in the evolution. Expression profile suggested that the BnYUC family genes tended to express in specific growth/development stages as well as suffering stress/hormone treatments. It suggested that dominant expression of specific members existed with each development stage or treatment, indicating that each BnYUC might have a clear division of work, and play a given biological function. This work was expected to build a basis for further study of the involvement of BnYUC in growth, development and stress response.

生长素是植物生长发育的必需物质,与植物的结构密切相关。YUCCA (YUC)蛋白催化内源性生长素生物合成的限速步骤。在这项研究中,我们在油菜基因组中鉴定了57个BnYUC基因,分布在17条染色体上。其中,A09染色体含BnYUCs最多,为6个。系统进化树显示,所有的BnYUC成员被划分为2个进化集群,包括7个亚群。在亚群中,进化枝Ⅰ-C由20个成员组成,独立于拟南芥进化而来,motif 10是独特的。基因组共线性分析表明,YUC共线性基因对在芸苔属植物中广泛存在,表明该科在进化过程中具有较高的保留率。表达谱表明,BnYUC家族基因倾向于在特定的生长/发育阶段以及受到应激/激素处理时表达。这表明在每个发育阶段或治疗过程中都存在特定成员的显性表达,说明每个BnYUC可能有明确的分工,并发挥特定的生物学功能。本研究为进一步研究BnYUC在生长发育和应激反应中的作用奠定了基础。
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引用次数: 1
Estimation of chlorophyll content in Brassica napus based on unmanned aerial vehicle images 基于无人机影像的甘蓝型油菜叶绿素含量估算
Q3 Agricultural and Biological Sciences Pub Date : 2022-07-01 DOI: 10.1016/j.ocsci.2022.08.004
Yayi Huang , Qiming Ma , Xiaoming Wu , Hao Li , Kun Xu , Gaoxiang Ji , Fang Qian , Lixia Li , Qian Huang , Ying Long , Xiaojun Zhang , Biyun Chen , Changhua Liu

The chlorophyll content has a direct effect on photosynthesis of crops. In order to explore a quick and convenient method for estimating the chlorophyll content of Brassica napus and facilitate efficient crop monitoring, we measured the actual value of chlorophyll with a SPAD-502 chlorophyll detector, and collected aerial images of B. napus with an unmanned aerial vehicle (UAV) carrying a RGB camera in this study. The total number of 270 samples collected images were divided into regions according to the planting conditions of different B. napus varieties in the field. Then, according to the empirical formula, there were 36 colors’ characteristic parameters calculated and combined. To estimate the chlorophyll content of rape, 189 samples were included in the modeling set, while the other 81 samples were enrolled in the validation set for testing the accuracy of this model. After the combination of R (red), G (green) and B (blue) color channels, the results showed that the color characteristics B/(R ​+ ​G), b, B/G, (G-B)/(G ​+ ​B), g-b were highly connected with the measured value of chlorophyll SPAD, and the correlation coefficient between the combination based on B/(R ​+ ​G) and SPAD value was 0.747. With R2 = 0.805, RMSE = 3.343, and RE = 6.84%, the regression model created using random forest had superior outcomes, according to the model comparison. This study offers a new method for quickly estimating the amount of chlorophyll in rapeseed and a workable reference for crop monitoring using the UAV platform.

叶绿素含量对作物的光合作用有直接影响。为了探索一种快速便捷的估算甘蓝型油菜叶绿素含量的方法,方便高效的作物监测,本研究利用SPAD-502型叶绿素探测器测量甘蓝型油菜叶绿素的实际值,并利用搭载RGB相机的无人机(UAV)采集甘蓝型油菜的航拍图像。根据不同甘蓝型油菜品种在田间的种植条件,将采集到的270张样品图像进行区域划分。然后,根据经验公式,计算并组合出36种颜色的特征参数。为了估算油菜叶绿素含量,189个样品被纳入建模集,另外81个样品被纳入验证集,以检验该模型的准确性。R(红)、G(绿)、B(蓝)颜色通道组合后,颜色特征B/(R + G)、B、B/G、(G-B)/(G + B)、G-B与叶绿素SPAD实测值高度相关,基于B/(R + G)组合与SPAD值的相关系数为0.747。经模型比较,R2 = 0.805,RMSE = 3.343,RE = 6.84%,采用随机森林建立的回归模型效果较好。本研究为油菜叶绿素含量的快速估算提供了一种新的方法,为利用无人机平台进行作物监测提供了可行的参考。
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引用次数: 4
Assessment of land suitability for oilseeds crops (sesame and groundnut) using geospatial techniques: In the case of Diga district, East Wollega zone, western Ethiopia 利用地理空间技术评估油籽作物(芝麻和花生)的土地适宜性:以埃塞俄比亚西部东Wollega地区的Diga地区为例
Q3 Agricultural and Biological Sciences Pub Date : 2022-07-01 DOI: 10.1016/j.ocsci.2022.08.001
Mitiku Badasa Moisa , Biratu Bobo Merga , Bacha Temesgen Gabissa , Dessalegn Obsi Gemeda

Sesame and groundnut crops are the major oilseed crops produced for exports and local consumptions in Ethiopia. This study attempted to evaluate land suitability for oilseeds crops using Geographic Information Systems (GIS) and multi-criteria evaluation in Diga district of East Wollega zone, western Ethiopia. To support the growing population, sesame and groundnut land suitability evaluations were carried out to ensure the sustainability of agricultural production. Different data inputs were used, including mainly climate data (temperature and rainfall), topography data (slope), soil data (soil texture, soil depth and soil drainage), and infrastructure data (road and market). In this study, sesame and groundnut land suitability areas were categorized into 4 classes: highly suitable, moderately suitable, marginally suitable, and not suitable. The result revealed that, about 252.1 ha (0.4%) and 113.1 ha (0.2%) were highly suitable for sesame and groundnut respectively. Result showed that most parts of the study area were moderately suitable for sesame and groundnut productions. Specially, the central and western parts of the study area were highly suitable and moderately suitable for sesame production. The study recommended the local communities to utilize the existing potential of the study area for sesame and groundnut productions. Moreover, decision makers should promote the suitability of the area for both small- and large-scale investment on sesame and groundnut production.

芝麻和花生作物是埃塞俄比亚出口和当地消费的主要油料作物。本研究试图利用地理信息系统(GIS)和多标准评价方法在埃塞俄比亚西部东沃勒加地区的Diga区评价油籽作物的土地适宜性。为了支持不断增长的人口,开展了芝麻和花生土地适宜性评价,以确保农业生产的可持续性。使用了不同的数据输入,主要包括气候数据(温度和降雨)、地形数据(坡度)、土壤数据(土壤质地、土壤深度和土壤排水)和基础设施数据(道路和市场)。本研究将芝麻花生土地适宜区划分为高度适宜、中等适宜、一般适宜和不适宜4类。结果表明,适宜芝麻和花生种植面积分别约为252.1 ha(0.4%)和113.1 ha(0.2%)。结果表明,研究区大部分地区适宜芝麻、花生生产。研究区中部和西部分别为高适宜和中等适宜的芝麻种植区域。该研究建议当地社区利用研究区域的现有潜力生产芝麻和花生。此外,决策者应促进该地区对芝麻和花生生产的小规模和大规模投资的适宜性。
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引用次数: 5
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Oil Crop Science
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