Pub Date : 2024-06-05DOI: 10.1186/s40708-024-00229-8
Md Fazlul Karim Khondakar, Md Hasib Sarowar, Mehdi Hasan Chowdhury, Sumit Majumder, Md Azad Hossain, M Ali Akber Dewan, Quazi Delwar Hossain
Neuromarketing is an emerging research field that aims to understand consumers' decision-making processes when choosing which product to buy. This information is highly sought after by businesses looking to improve their marketing strategies by understanding what leaves a positive or negative impression on consumers. It has the potential to revolutionize the marketing industry by enabling companies to offer engaging experiences, create more effective advertisements, avoid the wrong marketing strategies, and ultimately save millions of dollars for businesses. Therefore, good documentation is necessary to capture the current research situation in this vital sector. In this article, we present a systematic review of EEG-based Neuromarketing. We aim to shed light on the research trends, technical scopes, and potential opportunities in this field. We reviewed recent publications from valid databases and divided the popular research topics in Neuromarketing into five clusters to present the current research trend in this field. We also discuss the brain regions that are activated when making purchase decisions and their relevance to Neuromarketing applications. The article provides appropriate illustrations of marketing stimuli that can elicit authentic impressions from consumers' minds, the techniques used to process and analyze recorded brain data, and the current strategies employed to interpret the data. Finally, we offer recommendations to upcoming researchers to help them investigate the possibilities in this area more efficiently in the future.
{"title":"A systematic review on EEG-based neuromarketing: recent trends and analyzing techniques.","authors":"Md Fazlul Karim Khondakar, Md Hasib Sarowar, Mehdi Hasan Chowdhury, Sumit Majumder, Md Azad Hossain, M Ali Akber Dewan, Quazi Delwar Hossain","doi":"10.1186/s40708-024-00229-8","DOIUrl":"10.1186/s40708-024-00229-8","url":null,"abstract":"<p><p>Neuromarketing is an emerging research field that aims to understand consumers' decision-making processes when choosing which product to buy. This information is highly sought after by businesses looking to improve their marketing strategies by understanding what leaves a positive or negative impression on consumers. It has the potential to revolutionize the marketing industry by enabling companies to offer engaging experiences, create more effective advertisements, avoid the wrong marketing strategies, and ultimately save millions of dollars for businesses. Therefore, good documentation is necessary to capture the current research situation in this vital sector. In this article, we present a systematic review of EEG-based Neuromarketing. We aim to shed light on the research trends, technical scopes, and potential opportunities in this field. We reviewed recent publications from valid databases and divided the popular research topics in Neuromarketing into five clusters to present the current research trend in this field. We also discuss the brain regions that are activated when making purchase decisions and their relevance to Neuromarketing applications. The article provides appropriate illustrations of marketing stimuli that can elicit authentic impressions from consumers' minds, the techniques used to process and analyze recorded brain data, and the current strategies employed to interpret the data. Finally, we offer recommendations to upcoming researchers to help them investigate the possibilities in this area more efficiently in the future.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"17"},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11153447/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141248879","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-04DOI: 10.1186/s40708-024-00230-1
Atefe Aghaei, Mohsen Ebrahimi Moghaddam
This study investigates the correlation between brain age and chronological age in healthy individuals using brain MRI images, aiming to identify potential biomarkers for neurodegenerative diseases like Alzheimer's. To achieve this, a novel attention-based ResNet method, 3D-Attention-Resent-SVR, is proposed to accurately estimate brain age and distinguish between Cognitively Normal (CN) and Alzheimer's disease (AD) individuals by computing the brain age gap (BAG). Unlike conventional methods, which often rely on single datasets, our approach addresses potential biases by employing four datasets for training and testing. The results, based on a combined dataset from four public sources comprising 3844 data points, demonstrate the model's efficacy with a mean absolute error (MAE) of 2.05 for brain age gap estimation. Moreover, the model's generalizability is showcased by training on three datasets and testing on a separate one, yielding a remarkable MAE of 2.4. Furthermore, leveraging BAG as the sole biomarker, our method achieves an accuracy of 92% and an AUC of 0.87 in Alzheimer's disease detection on the ADNI dataset. These findings underscore the potential of our approach in assisting with early detection and disease monitoring, emphasizing the strong correlation between BAG and AD.
本研究利用脑磁共振成像图像研究了健康人的脑年龄与实际年龄之间的相关性,旨在确定阿尔茨海默氏症等神经退行性疾病的潜在生物标志物。为此,我们提出了一种新颖的基于注意力的 ResNet 方法--3D-Attention-Resent-SVR,通过计算脑年龄差距(BAG)来准确估计脑年龄并区分认知正常(CN)和阿尔茨海默病(AD)患者。与通常依赖单一数据集的传统方法不同,我们的方法采用四个数据集进行训练和测试,从而解决了潜在的偏差问题。结果表明,该模型在估算脑年龄差距时的平均绝对误差(MAE)为 2.05。此外,通过在三个数据集上进行训练并在另一个数据集上进行测试,该模型的通用性也得到了展示,其平均绝对误差为 2.4。此外,利用 BAG 作为唯一的生物标志物,我们的方法在 ADNI 数据集上检测阿尔茨海默病时达到了 92% 的准确率和 0.87 的 AUC。这些发现凸显了我们的方法在协助早期检测和疾病监测方面的潜力,同时强调了 BAG 与 AD 之间的强相关性。
{"title":"Brain age gap estimation using attention-based ResNet method for Alzheimer's disease detection.","authors":"Atefe Aghaei, Mohsen Ebrahimi Moghaddam","doi":"10.1186/s40708-024-00230-1","DOIUrl":"10.1186/s40708-024-00230-1","url":null,"abstract":"<p><p>This study investigates the correlation between brain age and chronological age in healthy individuals using brain MRI images, aiming to identify potential biomarkers for neurodegenerative diseases like Alzheimer's. To achieve this, a novel attention-based ResNet method, 3D-Attention-Resent-SVR, is proposed to accurately estimate brain age and distinguish between Cognitively Normal (CN) and Alzheimer's disease (AD) individuals by computing the brain age gap (BAG). Unlike conventional methods, which often rely on single datasets, our approach addresses potential biases by employing four datasets for training and testing. The results, based on a combined dataset from four public sources comprising 3844 data points, demonstrate the model's efficacy with a mean absolute error (MAE) of 2.05 for brain age gap estimation. Moreover, the model's generalizability is showcased by training on three datasets and testing on a separate one, yielding a remarkable MAE of 2.4. Furthermore, leveraging BAG as the sole biomarker, our method achieves an accuracy of 92% and an AUC of 0.87 in Alzheimer's disease detection on the ADNI dataset. These findings underscore the potential of our approach in assisting with early detection and disease monitoring, emphasizing the strong correlation between BAG and AD.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"16"},"PeriodicalIF":0.0,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11150363/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141236420","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-04DOI: 10.1186/s40708-024-00227-w
Navneet Agarwal, Gaël Dias, Sonia Dollfus
Depression is a serious mental illness that affects millions worldwide and consequently has attracted considerable research interest in recent years. Within the field of automated depression estimation, most researchers focus on neural network architectures while ignoring other research directions. Within this paper, we explore an alternate approach and study the impact of input representations on the learning ability of the models. In particular, we work with graph-based representations to highlight different aspects of input transcripts, both at the interview and corpus levels. We use sentence similarity graphs and keyword correlation graphs to exemplify the advantages of graphical representations over sequential models for binary classification problems within depression estimation. Additionally, we design multi-view architectures that split interview transcripts into question and answer views in order to take into account dialogue structure. Our experiments show the benefits of multi-view based graphical input encodings over sequential models and provide new state-of-the-art results for binary classification on the gold standard DAIC-WOZ dataset. Further analysis establishes our method as a means for generating meaningful insights and visual summaries of interview transcripts that can be used by medical professionals.
{"title":"Multi-view graph-based interview representation to improve depression level estimation.","authors":"Navneet Agarwal, Gaël Dias, Sonia Dollfus","doi":"10.1186/s40708-024-00227-w","DOIUrl":"10.1186/s40708-024-00227-w","url":null,"abstract":"<p><p>Depression is a serious mental illness that affects millions worldwide and consequently has attracted considerable research interest in recent years. Within the field of automated depression estimation, most researchers focus on neural network architectures while ignoring other research directions. Within this paper, we explore an alternate approach and study the impact of input representations on the learning ability of the models. In particular, we work with graph-based representations to highlight different aspects of input transcripts, both at the interview and corpus levels. We use sentence similarity graphs and keyword correlation graphs to exemplify the advantages of graphical representations over sequential models for binary classification problems within depression estimation. Additionally, we design multi-view architectures that split interview transcripts into question and answer views in order to take into account dialogue structure. Our experiments show the benefits of multi-view based graphical input encodings over sequential models and provide new state-of-the-art results for binary classification on the gold standard DAIC-WOZ dataset. Further analysis establishes our method as a means for generating meaningful insights and visual summaries of interview transcripts that can be used by medical professionals.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"14"},"PeriodicalIF":0.0,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11150354/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141236817","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-04DOI: 10.1186/s40708-024-00228-9
Yoon Kyoung Choi, Linqing Feng, Won-Ki Jeong, Jinhyun Kim
Mapping neural connections within the brain has been a fundamental goal in neuroscience to understand better its functions and changes that follow aging and diseases. Developments in imaging technology, such as microscopy and labeling tools, have allowed researchers to visualize this connectivity through high-resolution brain-wide imaging. With this, image processing and analysis have become more crucial. However, despite the wealth of neural images generated, access to an integrated image processing and analysis pipeline to process these data is challenging due to scattered information on available tools and methods. To map the neural connections, registration to atlases and feature extraction through segmentation and signal detection are necessary. In this review, our goal is to provide an updated overview of recent advances in these image-processing methods, with a particular focus on fluorescent images of the mouse brain. Our goal is to outline a pathway toward an integrated image-processing pipeline tailored for connecto-informatics. An integrated workflow of these image processing will facilitate researchers' approach to mapping brain connectivity to better understand complex brain networks and their underlying brain functions. By highlighting the image-processing tools available for fluroscent imaging of the mouse brain, this review will contribute to a deeper grasp of connecto-informatics, paving the way for better comprehension of brain connectivity and its implications.
{"title":"Connecto-informatics at the mesoscale: current advances in image processing and analysis for mapping the brain connectivity.","authors":"Yoon Kyoung Choi, Linqing Feng, Won-Ki Jeong, Jinhyun Kim","doi":"10.1186/s40708-024-00228-9","DOIUrl":"10.1186/s40708-024-00228-9","url":null,"abstract":"<p><p>Mapping neural connections within the brain has been a fundamental goal in neuroscience to understand better its functions and changes that follow aging and diseases. Developments in imaging technology, such as microscopy and labeling tools, have allowed researchers to visualize this connectivity through high-resolution brain-wide imaging. With this, image processing and analysis have become more crucial. However, despite the wealth of neural images generated, access to an integrated image processing and analysis pipeline to process these data is challenging due to scattered information on available tools and methods. To map the neural connections, registration to atlases and feature extraction through segmentation and signal detection are necessary. In this review, our goal is to provide an updated overview of recent advances in these image-processing methods, with a particular focus on fluorescent images of the mouse brain. Our goal is to outline a pathway toward an integrated image-processing pipeline tailored for connecto-informatics. An integrated workflow of these image processing will facilitate researchers' approach to mapping brain connectivity to better understand complex brain networks and their underlying brain functions. By highlighting the image-processing tools available for fluroscent imaging of the mouse brain, this review will contribute to a deeper grasp of connecto-informatics, paving the way for better comprehension of brain connectivity and its implications.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"15"},"PeriodicalIF":0.0,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11150223/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141236712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-15DOI: 10.1186/s40708-024-00226-x
Sharan J Prakash, Kimberly M Van Auken, David P Hill, Paul W Sternberg
{"title":"Correction: Semantic representation of neural circuit knowledge in Caenorhabditis elegans.","authors":"Sharan J Prakash, Kimberly M Van Auken, David P Hill, Paul W Sternberg","doi":"10.1186/s40708-024-00226-x","DOIUrl":"10.1186/s40708-024-00226-x","url":null,"abstract":"","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"13"},"PeriodicalIF":0.0,"publicationDate":"2024-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11096283/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140946289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A relaxed state is essential for effective hypnotherapy, a crucial component of mental health treatments. During hypnotherapy sessions, neurologists rely on the patient's relaxed state to introduce positive suggestions. While EEG is a widely recognized method for detecting human emotions, analyzing EEG data presents challenges due to its multi-channel, multi-band nature, leading to high-dimensional data. Furthermore, determining the onset of relaxation remains challenging for neurologists. This paper presents the Effective Relax Acquisition (ERA) method designed to identify the beginning of a relaxed state. ERA employs sub-band sampling within the Alpha band for the frequency domain and segments the data into four-period groups for the time domain analysis. Data enhancement strategies include using Window Length (WL) and Overlapping Shifting Windows (OSW) scenarios. Dimensionality reduction is achieved through Principal Component Analysis (PCA) by prioritizing the most significant eigenvector values. Our experimental results indicate that the relaxed state is predominantly observable in the high Alpha sub-band, particularly within the fourth period group. The ERA demonstrates high accuracy with a WL of 3 s and OSW of 0.25 s using the KNN classifier (90.63%). These findings validate the effectiveness of ERA in accurately identifying relaxed states while managing the complexity of EEG data.
{"title":"Effective relax acquisition: a novel approach to classify relaxed state in alpha band EEG-based transformation.","authors":"Diah Risqiwati, Adhi Dharma Wibawa, Evi Septiana Pane, Eko Mulyanto Yuniarno, Wardah Rahmatul Islamiyah, Mauridhi Hery Purnomo","doi":"10.1186/s40708-024-00225-y","DOIUrl":"10.1186/s40708-024-00225-y","url":null,"abstract":"<p><p>A relaxed state is essential for effective hypnotherapy, a crucial component of mental health treatments. During hypnotherapy sessions, neurologists rely on the patient's relaxed state to introduce positive suggestions. While EEG is a widely recognized method for detecting human emotions, analyzing EEG data presents challenges due to its multi-channel, multi-band nature, leading to high-dimensional data. Furthermore, determining the onset of relaxation remains challenging for neurologists. This paper presents the Effective Relax Acquisition (ERA) method designed to identify the beginning of a relaxed state. ERA employs sub-band sampling within the Alpha band for the frequency domain and segments the data into four-period groups for the time domain analysis. Data enhancement strategies include using Window Length (WL) and Overlapping Shifting Windows (OSW) scenarios. Dimensionality reduction is achieved through Principal Component Analysis (PCA) by prioritizing the most significant eigenvector values. Our experimental results indicate that the relaxed state is predominantly observable in the high Alpha sub-band, particularly within the fourth period group. The ERA demonstrates high accuracy with a WL of 3 s and OSW of 0.25 s using the KNN classifier (90.63%). These findings validate the effectiveness of ERA in accurately identifying relaxed states while managing the complexity of EEG data.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"12"},"PeriodicalIF":0.0,"publicationDate":"2024-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11091037/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140917004","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-04DOI: 10.1186/s40708-024-00224-z
Andres Soler, Eduardo Giraldo, Marta Molinas
The hand motor activity can be identified and converted into commands for controlling machines through a brain-computer interface (BCI) system. Electroencephalography (EEG) based BCI systems employ electrodes to measure the electrical brain activity projected at the scalp and discern patterns. However, the volume conduction problem attenuates the electric potential from the brain to the scalp and introduces spatial mixing to the signals. EEG source imaging (ESI) techniques can be applied to alleviate these issues and enhance the spatial segregation of information. Despite this potential solution, the use of ESI has not been extensively applied in BCI systems, largely due to accuracy concerns over reconstruction accuracy when using low-density EEG (ldEEG), which is commonly used in BCIs. To overcome these accuracy issues in low channel counts, recent studies have proposed reducing the number of EEG channels based on optimized channel selection. This work presents an evaluation of the spatial and temporal accuracy of ESI when applying optimized channel selection towards ldEEG number of channels. For this, a simulation study of source activity related to hand movement has been performed using as a starting point an EEG system with 339 channels. The results obtained after optimization show that the activity in the concerned areas can be retrieved with a spatial accuracy of 3.99, 10.69, and 14.29 mm (localization error) when using 32, 16, and 8 channel counts respectively. In addition, the use of optimally selected electrodes has been validated in a motor imagery classification task, obtaining a higher classification performance when using 16 optimally selected channels than 32 typical electrode distributions under 10–10 system, and obtaining higher classification performance when combining ESI methods with the optimal selected channels.
{"title":"EEG source imaging of hand movement-related areas: an evaluation of the reconstruction and classification accuracy with optimized channels","authors":"Andres Soler, Eduardo Giraldo, Marta Molinas","doi":"10.1186/s40708-024-00224-z","DOIUrl":"https://doi.org/10.1186/s40708-024-00224-z","url":null,"abstract":"The hand motor activity can be identified and converted into commands for controlling machines through a brain-computer interface (BCI) system. Electroencephalography (EEG) based BCI systems employ electrodes to measure the electrical brain activity projected at the scalp and discern patterns. However, the volume conduction problem attenuates the electric potential from the brain to the scalp and introduces spatial mixing to the signals. EEG source imaging (ESI) techniques can be applied to alleviate these issues and enhance the spatial segregation of information. Despite this potential solution, the use of ESI has not been extensively applied in BCI systems, largely due to accuracy concerns over reconstruction accuracy when using low-density EEG (ldEEG), which is commonly used in BCIs. To overcome these accuracy issues in low channel counts, recent studies have proposed reducing the number of EEG channels based on optimized channel selection. This work presents an evaluation of the spatial and temporal accuracy of ESI when applying optimized channel selection towards ldEEG number of channels. For this, a simulation study of source activity related to hand movement has been performed using as a starting point an EEG system with 339 channels. The results obtained after optimization show that the activity in the concerned areas can be retrieved with a spatial accuracy of 3.99, 10.69, and 14.29 mm (localization error) when using 32, 16, and 8 channel counts respectively. In addition, the use of optimally selected electrodes has been validated in a motor imagery classification task, obtaining a higher classification performance when using 16 optimally selected channels than 32 typical electrode distributions under 10–10 system, and obtaining higher classification performance when combining ESI methods with the optimal selected channels.","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"31 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140828837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-05DOI: 10.1186/s40708-024-00222-1
Viswan Vimbi, Noushath Shaffi, Mufti Mahmud
Explainable artificial intelligence (XAI) has gained much interest in recent years for its ability to explain the complex decision-making process of machine learning (ML) and deep learning (DL) models. The Local Interpretable Model-agnostic Explanations (LIME) and Shaply Additive exPlanation (SHAP) frameworks have grown as popular interpretive tools for ML and DL models. This article provides a systematic review of the application of LIME and SHAP in interpreting the detection of Alzheimer’s disease (AD). Adhering to PRISMA and Kitchenham’s guidelines, we identified 23 relevant articles and investigated these frameworks’ prospective capabilities, benefits, and challenges in depth. The results emphasise XAI’s crucial role in strengthening the trustworthiness of AI-based AD predictions. This review aims to provide fundamental capabilities of LIME and SHAP XAI frameworks in enhancing fidelity within clinical decision support systems for AD prognosis.
{"title":"Interpreting artificial intelligence models: a systematic review on the application of LIME and SHAP in Alzheimer’s disease detection","authors":"Viswan Vimbi, Noushath Shaffi, Mufti Mahmud","doi":"10.1186/s40708-024-00222-1","DOIUrl":"https://doi.org/10.1186/s40708-024-00222-1","url":null,"abstract":"Explainable artificial intelligence (XAI) has gained much interest in recent years for its ability to explain the complex decision-making process of machine learning (ML) and deep learning (DL) models. The Local Interpretable Model-agnostic Explanations (LIME) and Shaply Additive exPlanation (SHAP) frameworks have grown as popular interpretive tools for ML and DL models. This article provides a systematic review of the application of LIME and SHAP in interpreting the detection of Alzheimer’s disease (AD). Adhering to PRISMA and Kitchenham’s guidelines, we identified 23 relevant articles and investigated these frameworks’ prospective capabilities, benefits, and challenges in depth. The results emphasise XAI’s crucial role in strengthening the trustworthiness of AI-based AD predictions. This review aims to provide fundamental capabilities of LIME and SHAP XAI frameworks in enhancing fidelity within clinical decision support systems for AD prognosis.","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"25 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140567512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-04DOI: 10.1186/s40708-024-00223-0
Jamie L. Hanson, Dorthea J. Adkins, Eva Bacas, Peiran Zhou
Brain age algorithms using data science and machine learning techniques show promise as biomarkers for neurodegenerative disorders and aging. However, head motion during MRI scanning may compromise image quality and influence brain age estimates. We examined the effects of motion on brain age predictions in adult participants with low, high, and no motion MRI scans (Original N = 148; Analytic N = 138). Five popular algorithms were tested: brainageR, DeepBrainNet, XGBoost, ENIGMA, and pyment. Evaluation metrics, intraclass correlations (ICCs), and Bland–Altman analyses assessed reliability across motion conditions. Linear mixed models quantified motion effects. Results demonstrated motion significantly impacted brain age estimates for some algorithms, with ICCs dropping as low as 0.609 and errors increasing up to 11.5 years for high motion scans. DeepBrainNet and pyment showed greatest robustness and reliability (ICCs = 0.956–0.965). XGBoost and brainageR had the largest errors (up to 13.5 RMSE) and bias with motion. Findings indicate motion artifacts influence brain age estimates in significant ways. Furthermore, our results suggest certain algorithms like DeepBrainNet and pyment may be preferable for deployment in populations where motion during MRI acquisition is likely. Further optimization and validation of brain age algorithms is critical to use brain age as a biomarker relevant for clinical outcomes.
{"title":"Examining the reliability of brain age algorithms under varying degrees of participant motion","authors":"Jamie L. Hanson, Dorthea J. Adkins, Eva Bacas, Peiran Zhou","doi":"10.1186/s40708-024-00223-0","DOIUrl":"https://doi.org/10.1186/s40708-024-00223-0","url":null,"abstract":"Brain age algorithms using data science and machine learning techniques show promise as biomarkers for neurodegenerative disorders and aging. However, head motion during MRI scanning may compromise image quality and influence brain age estimates. We examined the effects of motion on brain age predictions in adult participants with low, high, and no motion MRI scans (Original N = 148; Analytic N = 138). Five popular algorithms were tested: brainageR, DeepBrainNet, XGBoost, ENIGMA, and pyment. Evaluation metrics, intraclass correlations (ICCs), and Bland–Altman analyses assessed reliability across motion conditions. Linear mixed models quantified motion effects. Results demonstrated motion significantly impacted brain age estimates for some algorithms, with ICCs dropping as low as 0.609 and errors increasing up to 11.5 years for high motion scans. DeepBrainNet and pyment showed greatest robustness and reliability (ICCs = 0.956–0.965). XGBoost and brainageR had the largest errors (up to 13.5 RMSE) and bias with motion. Findings indicate motion artifacts influence brain age estimates in significant ways. Furthermore, our results suggest certain algorithms like DeepBrainNet and pyment may be preferable for deployment in populations where motion during MRI acquisition is likely. Further optimization and validation of brain age algorithms is critical to use brain age as a biomarker relevant for clinical outcomes.","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"254 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140567508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-12DOI: 10.1186/s40708-024-00221-2
Shihao Yang, Meng Jiao, Jing Xiang, Neel Fotedar, Hai Sun, Feng Liu
EEG/MEG source imaging (ESI) aims to find the underlying brain sources to explain the observed EEG or MEG measurement. Multiple classical approaches have been proposed to solve the ESI problem based on different neurophysiological assumptions. To support clinical decision-making, it is important to estimate not only the exact location of the source signal but also the extended source activation regions. Existing methods may render over-diffuse or sparse solutions, which limit the source extent estimation accuracy. In this work, we leverage the graph structures defined in the 3D mesh of the brain and the spatial graph Fourier transform (GFT) to decompose the spatial graph structure into sub-spaces of low-, medium-, and high-frequency basis. We propose to use the low-frequency basis of spatial graph filters to approximate the extended areas of brain activation and embed the GFT into the classical ESI methods. We validated the classical source localization methods with the corresponding improved version using GFT in both synthetic data and real data. We found the proposed method can effectively reconstruct focal source patterns and significantly improve the performance compared to the classical algorithms.
EEG/MEG 信号源成像(ESI)旨在找到潜在的大脑信号源,以解释观察到的 EEG 或 MEG 测量结果。基于不同的神经生理学假设,人们提出了多种经典方法来解决 ESI 问题。为了支持临床决策,重要的是不仅要估计源信号的确切位置,还要估计扩展的源激活区域。现有方法可能会产生过度弥散或稀疏的解决方案,从而限制了源范围估计的准确性。在这项工作中,我们利用大脑三维网格中定义的图结构和空间图傅里叶变换(GFT),将空间图结构分解为低频、中频和高频基础子空间。我们建议使用空间图滤波器的低频基础来近似大脑激活的扩展区域,并将 GFT 嵌入到经典的 ESI 方法中。我们在合成数据和真实数据中验证了经典源定位方法和使用 GFT 的相应改进版本。我们发现,与经典算法相比,所提出的方法能有效重建焦点源模式并显著提高性能。
{"title":"Rejuvenating classical brain electrophysiology source localization methods with spatial graph Fourier filters for source extents estimation.","authors":"Shihao Yang, Meng Jiao, Jing Xiang, Neel Fotedar, Hai Sun, Feng Liu","doi":"10.1186/s40708-024-00221-2","DOIUrl":"10.1186/s40708-024-00221-2","url":null,"abstract":"<p><p>EEG/MEG source imaging (ESI) aims to find the underlying brain sources to explain the observed EEG or MEG measurement. Multiple classical approaches have been proposed to solve the ESI problem based on different neurophysiological assumptions. To support clinical decision-making, it is important to estimate not only the exact location of the source signal but also the extended source activation regions. Existing methods may render over-diffuse or sparse solutions, which limit the source extent estimation accuracy. In this work, we leverage the graph structures defined in the 3D mesh of the brain and the spatial graph Fourier transform (GFT) to decompose the spatial graph structure into sub-spaces of low-, medium-, and high-frequency basis. We propose to use the low-frequency basis of spatial graph filters to approximate the extended areas of brain activation and embed the GFT into the classical ESI methods. We validated the classical source localization methods with the corresponding improved version using GFT in both synthetic data and real data. We found the proposed method can effectively reconstruct focal source patterns and significantly improve the performance compared to the classical algorithms.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"8"},"PeriodicalIF":0.0,"publicationDate":"2024-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10933195/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140111779","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}