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Computational approaches of modelling human papillomavirus transmission and prevention strategies: a systematic review. 模拟人类乳头瘤病毒传播和预防策略的计算方法:系统回顾。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-01-17 DOI: 10.1080/17513758.2024.2436376
Weiyi Wang, Shailendra Sawleshwarkar, Mahendra Piraveenan

Human papillomavirus (HPV) infection is the most common sexually transmitted infection in the world. Persistent oncogenic HPV infection has been a leading threat to global health and can lead to serious complications such as cervical cancer. Prevention interventions including vaccination and screening have been proven effective in reducing the risk of HPV-related diseases. In recent decades, computational epidemiology has been serving as a very useful tool to study HPV transmission dynamics and evaluation of prevention strategies. In this paper, we conduct a comprehensive literature review on state-of-the-art computational epidemic models for HPV disease dynamics, transmission dynamics, as well as prevention efforts. Selecting 45 most-relevant papers from an initial pool of 10,497 papers identified through keyword search, we classify them based on models used and prevention strategies employed, summarize current research trends, identify gaps in the present literature, and identify future research directions. In particular, we describe current consensus regarding optimal prevention strategies which favour prioritizing teenage girls for vaccination. We also note that optimal prevention strategies depend on the resources available in each country, with hybrid vaccination and screening being the most fruitful for developed countries, and screening-only approaches being most cost effective for low and middle income countries. We also highlight that in future, the use of computational and operations research tools such as game theory and linear programming, coupled with the large scale use of census and geographic information systems data, will greatly aid in the modelling, analysis and prevention of HPV.

人乳头瘤病毒(HPV)感染是世界上最常见的性传播感染。持续的致瘤性人乳头瘤病毒感染一直是全球健康的主要威胁,并可导致宫颈癌等严重并发症。包括疫苗接种和筛查在内的预防干预措施已被证明对减少hpv相关疾病的风险有效。近几十年来,计算流行病学已经成为研究HPV传播动态和评估预防策略的非常有用的工具。在本文中,我们对HPV疾病动力学,传播动力学以及预防工作的最先进的计算流行病模型进行了全面的文献综述。通过关键词搜索,我们从10497篇论文中选择了45篇最相关的论文,根据使用的模型和采用的预防策略对它们进行分类,总结当前的研究趋势,找出现有文献的空白,并确定未来的研究方向。特别是,我们描述了目前关于有利于优先接种少女疫苗的最佳预防战略的共识。我们还注意到,最佳预防战略取决于每个国家现有的资源,发达国家采用混合疫苗接种和筛查方法最有效,中低收入国家采用纯筛查方法最具成本效益。我们还强调,在未来,使用计算和运筹学工具,如博弈论和线性规划,再加上大规模使用人口普查和地理信息系统数据,将极大地有助于HPV的建模、分析和预防。
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引用次数: 0
Importance of pesticide and additional food in pest-predator system: a theoretical study. 农药和补充食物在害虫-捕食系统中的重要性的理论研究。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2024-12-26 DOI: 10.1080/17513758.2024.2444263
K Durga Prasad, B S R V Prasad, Kritish De

Integrated pest management (IPM) combines chemical and biological control to maintain pest populations below economic thresholds. The impact of providing additional food for predators on pest-predator dynamics, along- side pesticide use, in the IPM context remains unstudied. To address this issue, in this work a theoretical model was developed using differential equations, assuming Holling type II functional response for the predator, with additional food sources included. Strategies for controlling pest populations were derived by analyzing Hopf bifurcation occurring in the system using dynamical system theory. The study revealed that the quality and quantity of additional food supplied to predators play a crucial role in the system's dynamics. Pesticides, combined with the introduction of predators supported by high-quality supplementary food, enable a quick elimination of pests from the system more effectively. This observation highlights the role of IPM in optimizing pest management strategies with minimal pesticide application and supporting the environment.

有害生物综合防治(IPM)结合化学和生物防治,使有害生物数量保持在经济阈值以下。在IPM环境下,为捕食者提供额外食物以及农药使用对害虫-捕食者动态的影响仍未研究。为了解决这个问题,在这项工作中,我们利用微分方程建立了一个理论模型,假设捕食者的Holling II型功能反应,包括额外的食物来源。利用动力系统理论对系统中出现的Hopf分岔进行了分析,得出了害虫种群控制策略。研究表明,提供给捕食者的额外食物的质量和数量在系统的动态中起着至关重要的作用。杀虫剂,再加上引入由优质补充食品支持的捕食者,能够更有效地从系统中快速消除害虫。这一观察结果突出了IPM在以最少的农药施用优化有害生物管理策略和支持环境方面的作用。
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引用次数: 0
A risk-induced dispersal strategy of the infected population for a disease-free state in the SIS epidemic model. SIS 流行病模型中无疾病状态下受感染人群的风险诱导扩散策略。
IF 2.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2024-05-08 DOI: 10.1080/17513758.2024.2352359
Wonhyung Choi, Inkyung Ahn

This article proposes a dispersal strategy for infected individuals in a spatial susceptible-infected-susceptible (SIS) epidemic model. The presence of spatial heterogeneity and the movement of individuals play crucial roles in determining the persistence and eradication of infectious diseases. To capture these dynamics, we introduce a moving strategy called risk-induced dispersal (RID) for infected individuals in a continuous-time patch model of the SIS epidemic. First, we establish a continuous-time n-patch model and verify that the RID strategy is an effective approach for attaining a disease-free state. This is substantiated through simulations conducted on 7-patch models and analytical results derived from 2-patch models. Second, we extend our analysis by adapting the patch model into a diffusive epidemic model. This extension allows us to explore further the impact of the RID movement strategy on disease transmission and control. We validate our results through simulations, which provide the effects of the RID dispersal strategy.

本文提出了空间易感-感染-易感(SIS)流行病模型中受感染个体的扩散策略。空间异质性的存在和个体的移动在决定传染病的持续和根除方面起着至关重要的作用。为了捕捉这些动态变化,我们在 SIS 流行病的连续时间斑块模型中引入了一种称为风险诱导分散(RID)的受感染个体移动策略。首先,我们建立了一个连续时间 n 补丁模型,并验证了 RID 策略是实现无疾病状态的有效方法。通过对 7 个斑块模型的模拟和 2 个斑块模型的分析结果,我们证实了这一点。其次,我们通过将斑块模型调整为扩散流行病模型来扩展我们的分析。这一扩展使我们能够进一步探索 RID 移动策略对疾病传播和控制的影响。我们通过模拟验证了我们的结果,并提供了 RID 传播策略的效果。
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引用次数: 0
Dynamics of a stochastic modified Leslie-Gower predator-prey system with hunting cooperation. 具有狩猎合作的随机修正莱斯利-高尔捕食者-猎物系统的动力学。
IF 2.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-20 DOI: 10.1080/17513758.2024.2366495
Chao Li, Peilin Shi

In this paper, we consider a stochastic two-species predator-prey system with modified Leslie-Gower. Meanwhile, we assume that hunting cooperation occurs in the predators. By using Itô formula and constructing a proper Lyapunov function, we first show that there is a unique global positive solution for any given positive initial value. Furthermore, based on Chebyshev inequality, the stochastic ultimate boundedness and stochastic permanence are discussed. Then, under some conditions, we prove the persistence in mean and extinction of system. Finally, we verify our results by numerical simulations.

在本文中,我们考虑了一个改良莱斯利-高尔(Leslie-Gower)随机双物种捕食者-猎物系统。同时,我们假设捕食者之间存在狩猎合作。通过使用 Itô 公式和构建适当的 Lyapunov 函数,我们首先证明了对于任何给定的正初始值,都存在唯一的全局正解。此外,基于切比雪夫不等式,我们还讨论了随机终极有界性和随机永久性。然后,在某些条件下,我们证明了系统的均值持久性和消亡性。最后,我们通过数值模拟验证了我们的结果。
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引用次数: 0
Aziz Yakubu.
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-27 DOI: 10.1080/17513758.2024.2367893
Mike Reed
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引用次数: 0
Modeling and analysis of a multilayer solid tumour with cell physiological age and resource limitations. 具有细胞生理年龄和资源限制的多层实体肿瘤建模与分析
IF 2.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2023-12-22 DOI: 10.1080/17513758.2023.2295492
Zhonghu Luo, Zijian Liu, Yuanshun Tan, Jin Yang

We study an avascular spherical solid tumour model with cell physiological age and resource constraints in vivo. We divide the tumour cells into three components: proliferating cells, quiescent cells and dead cells in necrotic core. We assume that the division rate of proliferating cells is nonlinear due to the nutritional and spatial constraints. The proportion of newborn tumour cells entering directly into quiescent state is considered, since this proportion can respond to the therapeutic effect of drug. We establish a nonlinear age-structured tumour cell population model. We investigate the existence and uniqueness of the model solution and explore the local and global stabilities of the tumour-free steady state. The existence and local stability of the tumour steady state are studied. Finally, some numerical simulations are performed to verify the theoretical results and to investigate the effects of different parameters on the model.

我们研究了一个无血管球形实体肿瘤模型,该模型具有细胞生理年龄和体内资源限制。我们将肿瘤细胞分为三部分:增殖细胞、静止细胞和坏死核心中的死亡细胞。我们假设由于营养和空间限制,增殖细胞的分裂率是非线性的。我们考虑了直接进入静止状态的新生肿瘤细胞的比例,因为这部分细胞会对药物的治疗效果做出反应。我们建立了一个非线性年龄结构肿瘤细胞群体模型。我们研究了模型解的存在性和唯一性,并探讨了无肿瘤稳态的局部和全局稳定性。研究了肿瘤稳态的存在性和局部稳定性。最后,我们进行了一些数值模拟,以验证理论结果并研究不同参数对模型的影响。
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引用次数: 0
Optimal control strategies on HIV/AIDS and pneumonia co-infection with mathematical modelling approach. 用数学建模方法优化艾滋病毒/艾滋病和肺炎合并感染的控制策略。
IF 2.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2023-12-22 DOI: 10.1080/17513758.2023.2288873
Shewafera Wondimagegnhu Teklu, Birhanu Baye Terefe, Dejen Ketema Mamo, Yohannes Fissha Abebaw

In this paper, a compartmental model on the co-infection of pneumonia and HIV/AIDS with optimal control strategies was formulated using the system of ordinary differential equations. Using qualitative methods, we have analysed the mono-infection and HIV/AIDS and pneumonia co-infection models. We have computed effective reproduction numbers by applying the next-generation matrix method, applying Castillo Chavez criteria the models disease-free equilibrium points global stabilities were shown, while we have used the Centre manifold criteria to determine that the pneumonia infection and pneumonia and HIV/AIDS co-infection exhibit the phenomenon of backward bifurcation whenever the corresponding effective reproduction number is less than unity. We carried out the numerical simulations to investigate the behaviour of the co-infection model solutions. Furthermore, we have investigated various optimal control strategies to predict the best control strategy to minimize and possibly to eradicate the HIV/AIDS and pneumonia co-infection from the community.

本文利用常微分方程系统,建立了肺炎和艾滋病毒/艾滋病合并感染的分区模型,并提出了最佳控制策略。我们使用定性方法分析了单一感染模型和艾滋病毒/艾滋病与肺炎共同感染模型。我们运用新一代矩阵法计算了有效繁殖数,运用卡斯蒂略-查韦斯准则显示了模型无病平衡点的全局稳定性,同时我们运用中心流形准则确定,只要相应的有效繁殖数小于 1,肺炎感染和肺炎与艾滋病毒/艾滋病联合感染就会出现向后分叉现象。我们进行了数值模拟,以研究共同感染模型解的行为。此外,我们还研究了各种最佳控制策略,以预测最佳控制策略,从而最大限度地减少并可能根除社区中的艾滋病毒/艾滋病和肺炎合并感染。
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引用次数: 0
Bounding the generation time distribution uncertainty on R0 estimation from exponential growth rates. 从指数增长率估算 R0 的世代时间分布不确定性边界。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2024-10-16 DOI: 10.1080/17513758.2024.2410720
James Cochran, Bogdan Oancea, Dan Pirjol

The basic reproduction number R0 is one of the main parameters determining the spreading of an epidemic in a population of susceptible individuals. Wallinga and Lipsitch proposed a method for estimating R0 using the Euler-Lotka equation, which requires the Laplace transform of the generation interval distribution. The determination of the generation time distribution is challenging, as the generation time is not directly observable. We prove upper and lower bounds on R0 using only the first few moments of the generation interval distributions and study the sensitivity of the bounds to these parameters. The bounds do not require the exact shape of the generation interval distribution and give robust estimates of the r-R0 relationship.

基本繁殖数 R0 是决定流行病在易感人群中传播的主要参数之一。Wallinga 和 Lipsitch 提出了一种利用欧拉-洛特卡方程估算 R0 的方法,该方法需要对世代间隔分布进行拉普拉斯变换。确定世代时间分布具有挑战性,因为世代时间无法直接观测。我们仅利用发电间隔分布的前几个时刻就证明了 R0 的上界和下界,并研究了边界对这些参数的敏感性。这些界值不需要发电间隔分布的确切形状,并给出了 R-R0 关系的稳健估计值。
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引用次数: 0
The role of long-lived plasma cells in viral clearance. 长寿命浆细胞在病毒清除中的作用。
IF 2.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2024-03-06 DOI: 10.1080/17513758.2024.2325523
Mingran Zhang, Meili Li, Junling Ma

The adaptive immune system has two types of plasma cells (PC), long-lived plasma cells (LLPC) and short-lived plasma cells (SLPC), that differ in their lifespan. In this paper, we propose that LLPC is crucial to the clearance of viral particles in addition to reducing the viral basic reproduction number in secondary infections. We use a sequence of within-host mathematical models to show that, CD8 T cells, SLPC and memory B cells cannot achieve full viral clearance, and the viral load will reach a low positive equilibrium level because of a continuous replenishment of target cells. However, the presence of LLPC is crucial for viral clearance.

适应性免疫系统有两种类型的浆细胞(PC),即长寿命浆细胞(LLPC)和短寿命浆细胞(SLPC),它们的寿命各不相同。在本文中,我们提出长寿命浆细胞除了在二次感染中减少病毒的基本繁殖数量外,对清除病毒颗粒也至关重要。我们利用一系列宿主内数学模型证明,CD8 T 细胞、SLPC 和记忆 B 细胞无法实现完全清除病毒,由于靶细胞的不断补充,病毒载量将达到较低的正平衡水平。然而,LLPC 的存在对病毒清除至关重要。
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引用次数: 0
Estimation of spreading speeds and travelling waves for the lattice pioneer-climax competition system. 网格先驱-高潮竞争系统的传播速度和行波估算。
IF 2.8 4区 数学 Q3 ECOLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-11 DOI: 10.1080/17513758.2024.2365792
Haifeng Song, Yuxiang Zhang

This paper concerns the invasion dynamics of the lattice pioneer-climax competition model with parameter regions in which the system is non-monotone. We estimate the spreading speeds and establish appropriate conditions under which the spreading speeds are linearly selected. Moreover, the existence of travelling waves is determined by constructing suitable upper and lower solutions. It shows that the spreading speed coincides with the minimum wave speed of travelling waves if the diffusion rate of the invasive species is larger or equal to that of the native species. Our results are new to estimate the spreading speed of non-monotone lattice pioneer-climax systems, and the techniques developed in this work can be used to study the invasion dynamics of the pioneer-climax system with interaction delays, which could extend the results in the literature. The analysis replies on the construction of auxiliary systems, upper and lower solutions, and the monotone dynamical system approach.

本文涉及网格先驱-高潮竞争模型的入侵动力学,在该模型中,系统的参数区域是非单调的。我们估计了传播速度,并建立了传播速度线性选择的适当条件。此外,我们还通过构建合适的上解和下解确定了行波的存在。结果表明,如果入侵物种的扩散速度大于或等于本地物种的扩散速度,则扩散速度与行波的最小波速重合。我们的结果是估计非单调晶格先驱-高潮系统扩散速度的新方法,本文所发展的技术可用于研究有相互作用延迟的先驱-高潮系统的入侵动力学,这可以扩展文献中的结果。分析依赖于辅助系统的构建、上解和下解以及单调动力系统方法。
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引用次数: 0
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Journal of Biological Dynamics
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