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Computational approaches of modelling human papillomavirus transmission and prevention strategies: a systematic review. 模拟人类乳头瘤病毒传播和预防策略的计算方法:系统回顾。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-01-17 DOI: 10.1080/17513758.2024.2436376
Weiyi Wang, Shailendra Sawleshwarkar, Mahendra Piraveenan

Human papillomavirus (HPV) infection is the most common sexually transmitted infection in the world. Persistent oncogenic HPV infection has been a leading threat to global health and can lead to serious complications such as cervical cancer. Prevention interventions including vaccination and screening have been proven effective in reducing the risk of HPV-related diseases. In recent decades, computational epidemiology has been serving as a very useful tool to study HPV transmission dynamics and evaluation of prevention strategies. In this paper, we conduct a comprehensive literature review on state-of-the-art computational epidemic models for HPV disease dynamics, transmission dynamics, as well as prevention efforts. Selecting 45 most-relevant papers from an initial pool of 10,497 papers identified through keyword search, we classify them based on models used and prevention strategies employed, summarize current research trends, identify gaps in the present literature, and identify future research directions. In particular, we describe current consensus regarding optimal prevention strategies which favour prioritizing teenage girls for vaccination. We also note that optimal prevention strategies depend on the resources available in each country, with hybrid vaccination and screening being the most fruitful for developed countries, and screening-only approaches being most cost effective for low and middle income countries. We also highlight that in future, the use of computational and operations research tools such as game theory and linear programming, coupled with the large scale use of census and geographic information systems data, will greatly aid in the modelling, analysis and prevention of HPV.

人乳头瘤病毒(HPV)感染是世界上最常见的性传播感染。持续的致瘤性人乳头瘤病毒感染一直是全球健康的主要威胁,并可导致宫颈癌等严重并发症。包括疫苗接种和筛查在内的预防干预措施已被证明对减少hpv相关疾病的风险有效。近几十年来,计算流行病学已经成为研究HPV传播动态和评估预防策略的非常有用的工具。在本文中,我们对HPV疾病动力学,传播动力学以及预防工作的最先进的计算流行病模型进行了全面的文献综述。通过关键词搜索,我们从10497篇论文中选择了45篇最相关的论文,根据使用的模型和采用的预防策略对它们进行分类,总结当前的研究趋势,找出现有文献的空白,并确定未来的研究方向。特别是,我们描述了目前关于有利于优先接种少女疫苗的最佳预防战略的共识。我们还注意到,最佳预防战略取决于每个国家现有的资源,发达国家采用混合疫苗接种和筛查方法最有效,中低收入国家采用纯筛查方法最具成本效益。我们还强调,在未来,使用计算和运筹学工具,如博弈论和线性规划,再加上大规模使用人口普查和地理信息系统数据,将极大地有助于HPV的建模、分析和预防。
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引用次数: 0
Prediction of vaccination coverage levels in populations with increasing levels of heterogeneity. 在异质性水平增加的人群中预测疫苗接种覆盖水平。
IF 2.2 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-08-12 DOI: 10.1080/17513758.2025.2545188
Fan Bai

Heterogeneity of population is a key factor in modelling the transmission of disease among the population and has huge impact on the outcome of the transmission. In order to investigate the decision-making process in the heterogeneous mixing population regarding whether to be vaccinated or not, we propose the modelling framework which includes the epidemic models and the game theoretical analysis. We consider two sources of heterogeneity in this paper: the different activity levels and the different relative vaccination costs. It is interesting to observe that, if both sources of heterogeneity are considered, there exist a finite number of Nash equilibria for the vaccination game. While if only the difference of activity levels is considered, there are infinitely many Nash equilibria. For the latter case, the initial condition of the decision-making process becomes highly sensitive. In the application of public health management, the inclusion of population heterogeneity significantly complicates the prediction of the overall vaccine coverage level in the whole population.

人口异质性是建立疾病在人口中传播模型的关键因素,对传播结果有巨大影响。为了研究异质混合群体中是否接种疫苗的决策过程,我们提出了包括流行病模型和博弈论分析在内的建模框架。本文考虑了两个异质性来源:不同的活动水平和不同的相对疫苗接种成本。有趣的是,如果考虑到这两种异质性来源,接种博弈存在有限数量的纳什均衡。而如果只考虑活动水平的差异,则存在无限多个纳什均衡。对于后一种情况,决策过程的初始条件变得高度敏感。在公共卫生管理的应用中,纳入人群异质性显著复杂化了对整个人群总体疫苗覆盖水平的预测。
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引用次数: 0
Bifurcation analysis and chaos control in a Hassell-Varley model with the Ricker growth. 具有Ricker增长的Hassell-Varley模型的分岔分析与混沌控制。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-05-12 DOI: 10.1080/17513758.2025.2502336
Lijiao Jia, Yunil Roh, Il Hyo Jung

The Ricker-type growth model, which incorporates a density-dependent mechanism, is widely used in ecological modelling to fit a broad range of complex population growth patterns. In this study, the complex dynamics of a modified Hassell-Varley model with Ricker growth were analysed. We first investigated the permanence of solutions, the existence and uniqueness of the positive steady state and the local stability of equilibrium points. We confirm that, under certain parametric conditions, the proposed system undergoes a flip or Neimark-Sacker bifurcation within the interior of R+2. Two feedback control measures were employed to control bifurcation and chaos in the proposed system. Simultaneously, several examples are provided to support our theoretical results using numerical simulations, and are conducted to illustrate the intricate behaviours of the modified Hassell-Varley model.

ricker型增长模型包含了密度依赖机制,被广泛应用于生态模型中,以拟合广泛的复杂人口增长模式。本文分析了具有Ricker生长的改良Hassell-Varley模型的复杂动力学。首先研究了解的持久性、正稳态的存在唯一性和平衡点的局部稳定性。我们证实,在一定的参数条件下,所提出的系统在R+2的内部发生翻转或neimmark - sacker分岔。采用两种反馈控制措施来控制系统的分岔和混沌。同时,通过数值模拟给出了几个例子来支持我们的理论结果,并举例说明了改进的hassel - varley模型的复杂行为。
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引用次数: 0
Population dynamics driven by harvesting and prey refuge in the absence and presence of time delays. 在没有和存在时间延迟的情况下,由收获和猎物避难驱动的种群动态。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-06-10 DOI: 10.1080/17513758.2025.2516461
Tiancai Liao, Jian Chen, Min Zhu, Yi Wang

In this paper, we study the dynamics of a delayed predator-prey model with harvesting and prey refuge. For the model without time delays, we show the stability of boundary and positive equilibria, given the existence of bionomic equilibrium, and provide the optimal harvesting policy. For the model with time delays, we show the local stability of the positive equilibrium for four different time delay cases, give the existence of Hopf bifurcation near the positive equilibrium, and prove the direction and stability of bifurcating periodic solutions. Ecologically, via numerical simulations, we find that the synergistic effects of time delay, refuge and harvesting can have complex effects on population dynamics. One of the most important results indicates that the increase of prey refuge or prey harvesting rate can eliminate the periodic solutions induced by time delay, while the increase in predator harvesting rate can maintain this periodic phenomenon.

本文研究了一类具有收获和猎物庇护的延迟捕食-食饵模型的动力学问题。对于无时滞模型,给出了边界和正平衡点的稳定性,并给出了最优采收策略。对于时滞模型,给出了四种不同时滞情况下正平衡点的局部稳定性,给出了正平衡点附近Hopf分岔的存在性,并证明了分岔周期解的方向和稳定性。生态学上,通过数值模拟,我们发现时间延迟、避难和收获的协同效应会对种群动态产生复杂的影响。其中一个最重要的结果表明,猎物避难所或猎物捕获率的增加可以消除由时间延迟引起的周期性解,而捕食者捕获率的增加可以维持这种周期性现象。
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引用次数: 0
Mathematical modeling and Hopf bifurcation analysis of tumor macrophage interaction with polarization delay. 肿瘤巨噬细胞极化延迟相互作用的数学建模与Hopf分岔分析。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-05-26 DOI: 10.1080/17513758.2025.2508240
Jianping Li, Nan Liu, Danni Wang, Hongli Yang

Macrophages have both anti-tumor and pro-tumor effects. Time delay is commonly observed in real systems, yet its impact on tumor-macrophage dynamics remains unclear. This paper develops a new tumor-macrophage model with time delay. The model describes the interactions between tumor cells (T), the classically activated macrophages (M1), the alternatively activated macrophages (M2), and the inactive macrophages (M0). The system's solution is computed, and equilibrium stability is analyzed. The existence of Hopf bifurcation is subsequently established. There exists bifurcating periodic solutions near the internal equilibrium, showing tumor cells and macrophages can coexist in the long term, as well as the potential for tumor relapse. Furthermore, the normal form and center manifold theorem are utilized to study the nature of Hopf bifurcation. Sensitivity analysis highlights the effect of parameters on tumor population dynamics. Numerical simulations validate the theory, elaborating the model can serve as a useful tool for tumor system analysis.

巨噬细胞具有抗肿瘤和促肿瘤双重作用。时间延迟在现实系统中是常见的,但其对肿瘤-巨噬细胞动力学的影响尚不清楚。本文建立了一种新的肿瘤-巨噬细胞时滞模型。该模型描述了肿瘤细胞(T)、经典活化的巨噬细胞(M1)、交替活化的巨噬细胞(M2)和失活的巨噬细胞(M0)之间的相互作用。计算了系统的解,分析了系统的平衡稳定性。随后建立了Hopf分岔的存在性。在内部平衡附近存在分岔的周期解,表明肿瘤细胞和巨噬细胞可以长期共存,也存在肿瘤复发的可能。此外,利用范式定理和中心流形定理研究了Hopf分岔的性质。敏感性分析强调了参数对肿瘤种群动态的影响。数值模拟结果验证了该理论的正确性,为肿瘤系统分析提供了一个有用的工具。
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引用次数: 0
Importance of pesticide and additional food in pest-predator system: a theoretical study. 农药和补充食物在害虫-捕食系统中的重要性的理论研究。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2024-12-26 DOI: 10.1080/17513758.2024.2444263
K Durga Prasad, B S R V Prasad, Kritish De

Integrated pest management (IPM) combines chemical and biological control to maintain pest populations below economic thresholds. The impact of providing additional food for predators on pest-predator dynamics, along- side pesticide use, in the IPM context remains unstudied. To address this issue, in this work a theoretical model was developed using differential equations, assuming Holling type II functional response for the predator, with additional food sources included. Strategies for controlling pest populations were derived by analyzing Hopf bifurcation occurring in the system using dynamical system theory. The study revealed that the quality and quantity of additional food supplied to predators play a crucial role in the system's dynamics. Pesticides, combined with the introduction of predators supported by high-quality supplementary food, enable a quick elimination of pests from the system more effectively. This observation highlights the role of IPM in optimizing pest management strategies with minimal pesticide application and supporting the environment.

有害生物综合防治(IPM)结合化学和生物防治,使有害生物数量保持在经济阈值以下。在IPM环境下,为捕食者提供额外食物以及农药使用对害虫-捕食者动态的影响仍未研究。为了解决这个问题,在这项工作中,我们利用微分方程建立了一个理论模型,假设捕食者的Holling II型功能反应,包括额外的食物来源。利用动力系统理论对系统中出现的Hopf分岔进行了分析,得出了害虫种群控制策略。研究表明,提供给捕食者的额外食物的质量和数量在系统的动态中起着至关重要的作用。杀虫剂,再加上引入由优质补充食品支持的捕食者,能够更有效地从系统中快速消除害虫。这一观察结果突出了IPM在以最少的农药施用优化有害生物管理策略和支持环境方面的作用。
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引用次数: 0
Stationary distribution of a stochastic SEIR model with infectivity in the incubation period and homestead-isolation on the susceptible under regime switching. 具有潜伏期传染性的随机SEIR模型的平稳分布,易感者在状态转换下的家园隔离。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-06-24 DOI: 10.1080/17513758.2025.2521509
Ying He, Bo Bi

This paper is concerned with a stochastic SEIR model with infectivity in the incubation period and homestead-isolation on the susceptible, which is perturbed by white and colour noises. The model has a unique stationary distribution, which reflects the persistence of epidemics over a long period. Using the Has-minskii theorem and constructing stochastic Lyapunov functions with regime switching, we derive an important condition R0s. Comparing the expression for R0 and R0s, we can see that if there is no environmental noise, then R0s=R0. It ensures the asymptotic stability of the positive equilibrium E of the corresponding deterministic system.

本文研究了一种受白噪声和彩色噪声干扰的具有潜伏期传染性和易感个体家园隔离的随机SEIR模型。该模型具有独特的平稳分布,反映了流行病在很长一段时间内的持续性。利用哈斯-明斯基定理,构造具有状态切换的随机Lyapunov函数,得到了一个重要条件r0。对比R0和R0的表达式可以看出,如果不存在环境噪声,则R0 =R0。它保证了相应确定性系统的正平衡E *的渐近稳定性。
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引用次数: 0
Within-host dynamics of HTLV-2 and HIV-1 co-infection with delay. HTLV-2和HIV-1合并感染的宿主内动力学与延迟。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-05-21 DOI: 10.1080/17513758.2025.2506536
A M Elaiw, E A Almohaimeed

This paper formulates a mathematical model for the co-infection of HTLV-2 and HIV-1 with latent reservoirs, four types of distributed-time delays and HIV-1-specific B cells. We establish that the solutions remain bounded and nonnegative, identify the system's steady states, and derive sufficient conditions ensuring both their existence and global asymptotic stability. The system's global stability is confirmed using Lyapunov's method. We provide numerical simulations to support the stability results. Sensitivity analysis of basic reproduction numbers of HTLV-2 mono-infection (R1) and HIV-1 mono-infection (R2) is conducted. We examine how time delays influence the interaction between HIV-1 and HTLV-2. Including delay terms in the model reflects the influence of antiviral treatments, which help decrease R1 and R2, thus limiting the spread of infection. This highlights the potential for designing therapies that prolong delay period. Incorporating such delays improves model precision and supports more effective evaluation of treatment strategies.

本文建立了HTLV-2和HIV-1与潜伏库、四种分布时滞和HIV-1特异性B细胞共同感染的数学模型。我们证明了系统的解保持有界和非负,辨识了系统的稳定状态,并给出了保证系统稳定状态存在和全局渐近稳定的充分条件。利用Lyapunov方法确定了系统的全局稳定性。我们提供了数值模拟来支持稳定性结果。对HTLV-2单感染(R1)和HIV-1单感染(R2)的基本繁殖数进行敏感性分析。我们研究了时间延迟如何影响HIV-1和HTLV-2之间的相互作用。模型中加入延迟项反映了抗病毒治疗的影响,有助于降低R1和R2,从而限制感染的传播。这突出了设计延长延迟期的治疗方法的潜力。纳入这些延迟提高了模型的精度,并支持更有效的评估治疗策略。
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引用次数: 0
Bifurcations of a modified Leslie-Gower predator-prey model with fear, Allee effect and hunting cooperation strategy. 考虑恐惧、Allee效应和狩猎合作策略的改进Leslie-Gower捕食-被捕食模型的分岔。
IF 2.2 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-05 DOI: 10.1080/17513758.2025.2552730
Weili Kong, Yuanfu Shao

The fear preoften leads to changes in the physiological characteristics of the prey. Different stages of prey exhibit different physiological behaviours, such as susceptibility to predator risk, which often leads to Allee effect. Taking into account the influence of these factors, a modified Leslie-Gower predator-prey model with Allee effect and stage structure is constructed in this paper. By use of variational technique and normal form theory, the criteria assuring the appearance of transcritical bifurcation, saddle-node bifurcation, Hopf bifurcation and its direction are all established. Specially, such codimension 2 bifurcations as Bautin bifurcation and Bogdanov-Takens bifurcation are presented. The bubble phenomenon and bistability are detected. All theoretical findings are verified by numerical examples. The biological effects of fear level, Allee effect and stage structure on system stability are analysed.

这种恐惧通常会导致猎物的生理特征发生变化。不同阶段的猎物表现出不同的生理行为,如对捕食者风险的敏感性,这往往导致Allee效应。考虑到这些因素的影响,本文构造了一个具有Allee效应和阶段结构的改进的Leslie-Gower捕食-食饵模型。利用变分技术和范式理论,建立了保证跨临界分岔、鞍节点分岔、Hopf分岔及其方向出现的判据。特别地,给出了Bautin分岔和Bogdanov-Takens分岔等余维2分岔。检测了气泡现象和双稳性。通过数值算例验证了所有理论结果。分析了恐惧程度、Allee效应和阶段结构对系统稳定性的生物学效应。
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引用次数: 0
Modelling measles transmission dynamics and the impact of control strategies on outbreak Management. 模拟麻疹传播动态和控制策略对疫情管理的影响。
IF 1.8 4区 数学 Q3 ECOLOGY Pub Date : 2025-12-01 Epub Date: 2025-03-18 DOI: 10.1080/17513758.2025.2479448
Olumuyiwa James Peter

Measles is a highly contagious and potentially fatal disease, despite the availability of effective immunizations. This study formulates a deterministic mathematical model to investigate the transmission dynamics of measles, with eight compartments representing different epidemiological states such as susceptible, vaccinated, exposed, infected, early-treated, delayed-treated, hospitalized, and recovered individuals. We use the Next Generation Matrix (NGN) approach to obtain the basic reproduction number (R0) and examine local stability at the disease-free equilibrium (DFE). Sensitivity analysis with Partial Rank Correlation Coefficients (PRCC) identifies significant parameters influencing disease dynamics, such as vaccination rates, transmission rate, treatment timings, and disease-induced mortality rates. Simulation results show that delayed therapy has a limited effect on lowering the infected population, emphasizing the importance of immediate intervention. Early treatment considerably reduces the number of infected individuals, whereas improved recovery rates in hospitalized cases result in fewer hospitalizations. Vaccination is extremely successful, with increased rates significantly lowering the susceptible population while boosting the vaccinated population. Higher disease-related mortality rates reduce the afflicted population, stressing the importance of strong control methods. The transmission rate has a substantial impact on infection rates and hospitalizations, emphasizing the need for effective public health policies and healthcare capacity. The combined effect of immunization and early treatment provides useful information for optimizing control measures. This study emphasizes the need of quick and effective measures in managing measles outbreaks and serves as a platform for future research into improved public health methods.

尽管有有效的免疫接种,但麻疹是一种高度传染性和可能致命的疾病。本研究建立了一个确定性的数学模型来研究麻疹的传播动力学,其中八个隔间代表不同的流行病学状态,如易感、接种、暴露、感染、早期治疗、延迟治疗、住院和康复个体。我们使用下一代矩阵(NGN)方法获得基本繁殖数(R0),并检验了无病平衡(DFE)的局部稳定性。偏秩相关系数(PRCC)的敏感性分析确定了影响疾病动态的重要参数,如疫苗接种率、传播率、治疗时机和疾病引起的死亡率。模拟结果表明,延迟治疗对降低感染人群的影响有限,强调了立即干预的重要性。早期治疗大大减少了感染者的人数,而住院病例的康复率提高则减少了住院人数。疫苗接种非常成功,接种率的提高大大降低了易感人群,同时增加了接种疫苗的人群。与疾病有关的较高死亡率减少了受影响的人口,强调了强有力的控制方法的重要性。传播率对感染率和住院率产生重大影响,强调需要有效的公共卫生政策和保健能力。免疫和早期治疗的联合作用为优化控制措施提供了有用的信息。这项研究强调需要采取快速有效的措施来管理麻疹暴发,并为今后研究改进公共卫生方法提供了一个平台。
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引用次数: 0
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Journal of Biological Dynamics
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