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A global overview of insect-fern interactions and its ecological trends. 昆虫与蕨类植物相互作用及其生态趋势的全球概览。
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-11-03 DOI: 10.1111/nph.20229
Gabriela Fraga Porto, Diego V Anjos, Pedro Luna, Kleber Del-Claro

Historically, ferns have been described as underutilized by insects. However, studies have shown a diversity of insects interacting with ferns, although the evolutionary and ecological drivers of these interactions are still to be untangled. To fill these gaps, we compiled more than 100 yr of global data on insect-fern interactions from the literature comprising 374 fern and 649 insect species. With this database we assessed how fern trophic specialization, phylogenetic relationships and climate have shaped their interactions with insects. Our findings showed that interactions between ferns and insects can be explained by the phylogenetic relations among them. We observed that insect orders part of the Endopterygota clade tend to interact with similar fern species, which might be a result of the inheritance of Endopterygota ancestors probably due to phylogenetic niche conservationism. Under an ecological context, fern specialization increased with temperature, precipitation, and climatic stability. Our results show that climate might be one of the main factors explaining the spatial variation of insect-fern interactions, postulate also supported by the observed phylogenetic clustering of the studied ferns species. Our study highlights the intricate and multifaceted nature of insect-fern interactions, where evolutionary history and ecological factors converge to shape these relationships.

从历史上看,蕨类植物被昆虫利用不足。然而,研究表明昆虫与蕨类植物相互作用的多样性,尽管这些相互作用的进化和生态驱动因素仍有待解开。为了填补这些空白,我们从文献中整理了100多年来全球昆虫与蕨类植物相互作用的数据,包括374种蕨类植物和649种昆虫。利用这个数据库,我们评估了蕨类植物的营养特化、系统发育关系和气候是如何影响它们与昆虫的相互作用的。我们的研究结果表明,蕨类植物与昆虫之间的相互作用可以用它们之间的系统发育关系来解释。我们观察到,隶属于内页目(Endopterygota)支系的昆虫目倾向于与相似的蕨类植物发生相互作用,这可能是由于系统发育的生态位保护主义,内页目(Endopterygota)的祖先继承了蕨类植物。在生态背景下,蕨类植物的特化程度随着温度、降水量和气候稳定性的增加而增加。我们的研究结果表明,气候可能是解释昆虫与蕨类植物相互作用空间差异的主要因素之一,这一推测也得到了所研究的蕨类植物物种系统发育聚类的支持。我们的研究凸显了昆虫与蕨类植物相互作用的复杂性和多面性,进化史和生态因素共同塑造了这些关系。
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引用次数: 0
Complex consequences of disturbance on canopy plant communities of world forests: a review and synthesis 干扰对世界森林冠层植物群落的复杂影响:综述和综合。
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-10-10 DOI: 10.1111/nph.19245
Nalini M. Nadkarni

Epiphytes and their associated biota are increasingly recognized as contributing to biodiversity and to filling critical ecosystem functions in world forests. However, the attributes that have made them successful in canopy environments also make them vulnerable to natural and human-induced disturbances. Drawing upon ecological frameworks to understand disturbance, I categorized and synthesized the drivers and the consequences of disturbances on epiphytic materials. Across all impacts, disturbance agents were significantly more likely to lead to negative, rather than positive, effects in both tropical and temperate locales. Significantly more studies reported negative effects on abundance, diversity, community composition and connectivity, but some studies showed that disturbances enhanced these attributes. Although particular disturbance agents did not differently influence individual consequences, they explained a significant portion of variation in aggregated totals. Surprisingly, relative to human disturbances, natural disturbances were more likely to lead to negative effects. Many studies provided recommendations for effective societal responses to mitigate negative impacts, such as retaining large, old trees in forestry operations, patch-clearing for epiphyte harvest, maximizing forest fragment size, using epiphytes as bioindicators of disturbance, and applying principles of community forestry to land management. Future actions should also include communication of these results to policymakers and land managers.

表生植物及其相关生物群越来越被认为有助于生物多样性和填补世界森林的关键生态系统功能。然而,使它们在树冠环境中取得成功的特性也使它们容易受到自然和人类引起的干扰。利用生态学框架来理解干扰,我对干扰对附生材料的驱动因素和后果进行了分类和综合。在所有影响中,扰动因子在热带和温带地区都更有可能导致负面影响,而不是正面影响。值得注意的是,更多的研究报告了对丰度、多样性、群落组成和连通性的负面影响,但一些研究表明,干扰增强了这些属性。尽管特定的干扰因素对个体后果的影响没有不同,但它们解释了合计总量变化的很大一部分。令人惊讶的是,相对于人类的干扰,自然干扰更有可能导致负面影响。许多研究为有效的社会应对措施提供了建议,以减轻负面影响,如在林业作业中保留大型老树,为附生植物收割进行斑块清理,最大限度地扩大森林碎片大小,使用附生植物作为干扰的生物指标,以及将社区林业原则应用于土地管理。未来的行动还应包括向决策者和土地管理者传达这些结果。
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引用次数: 0
Tackling redundancy: genetic mechanisms underlying paralog compensation in plants 处理冗余:植物同源补偿的遗传机制。
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-19 DOI: 10.1111/nph.19267
Sessen Daniel Iohannes, David Jackson

Gene duplication is a powerful source of biological innovation giving rise to paralogous genes that undergo diverse fates. Redundancy between paralogous genes is an intriguing outcome of duplicate gene evolution, and its maintenance over evolutionary time has long been considered a paradox. Redundancy can also be dubbed ‘a geneticist's nightmare’: It hinders the predictability of genome editing outcomes and limits our ability to link genotypes to phenotypes. Genetic studies in yeast and plants have suggested that the ability of ancient redundant duplicates to compensate for dosage perturbations resulting from a loss of function depends on the reprogramming of gene expression, a phenomenon known as active compensation. Starting from considerations on the stoichiometric constraints that drive the evolutionary stability of redundancy, this review aims to provide insights into the mechanisms of active compensation between duplicates that could be targeted for breaking paralog dependencies – the next frontier in plant functional studies.

基因复制是生物创新的强大来源,产生了经历不同命运的同源基因。同源基因之间的冗余是重复基因进化的一个有趣结果,长期以来,它在进化过程中的维持一直被认为是一个悖论。冗余也可以被称为“遗传学家的噩梦”:它阻碍了基因组编辑结果的可预测性,并限制了我们将基因型与表型联系起来的能力。对酵母和植物的遗传学研究表明,古代冗余复制品补偿功能丧失引起的剂量扰动的能力取决于基因表达的重新编程,这种现象被称为主动补偿。从对驱动冗余进化稳定性的化学计量约束的考虑开始,这篇综述旨在深入了解重复之间的主动补偿机制,这些机制可以用来打破并行依赖关系 - 植物功能研究的下一个前沿。
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引用次数: 0
Deductive automated pollen classification in environmental samples via exploratory deep learning and imaging flow cytometry 通过探索性深度学习和成像流式细胞术对环境样本中的花粉进行演绎式自动分类
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-07 DOI: 10.1111/nph.19186
Claire M. Barnes, Ann L. Power, Daniel G. Barber, Richard K. Tennant, Richard T. Jones, G. Rob Lee, Jackie Hatton, Angela Elliott, Joana Zaragoza-Castells, Stephen M. Haley, Huw D. Summers, Minh Doan, Anne E. Carpenter, Paul Rees, John Love

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引用次数: 0
Conservation of beneficial microbes between the rhizosphere and the cyanosphere 根际和蓝层之间有益微生物的保护
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-05 DOI: 10.1111/nph.19225
Qing Zheng, Yuntao Hu, Suzanne M. Kosina, Marc W. Van Goethem, Susannah G. Tringe, Benjamin P. Bowen, Trent R. Northen

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引用次数: 0
Thinking outside the F-box: how UFO controls angiosperm development F盒子之外的思考:不明飞行物如何控制被子植物的发育
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-09-04 DOI: 10.1111/nph.19234
Philippe Rieu, Mo?ra Arnoux-Courseaux, Gabrielle Tichtinsky, Fran?ois Parcy

The formation of inflorescences and flowers is essential for the successful reproduction of angiosperms. In the past few decades, genetic studies have identified the LEAFY transcription factor and the UNUSUAL FLORAL ORGANS (UFO) F-box protein as two major regulators of flower development in a broad range of angiosperm species. Recent research has revealed that UFO acts as a transcriptional cofactor, redirecting the LEAFY floral regulator to novel cis-elements. In this review, we summarize the various roles of UFO across species, analyze past results in light of new discoveries and highlight the key questions that remain to be solved.

花序和花朵的形成对被子植物的成功繁殖至关重要。在过去的几十年里,遗传学研究已经确定LEAFY转录因子和不明飞行物F-box蛋白是广泛被子植物物种花朵发育的两个主要调节因子。最近的研究表明,不明飞行物是一种转录辅因子,将LEAFY花调节因子重定向到新的顺式元件。在这篇综述中,我们总结了不明飞行物在不同物种中的各种作用,根据新发现分析了过去的结果,并强调了有待解决的关键问题。
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引用次数: 1
MicroRNA 4407 modulates nodulation in soybean by repressing a root-specific ISOPENTENYLTRANSFERASE (GmIPT3) MicroRNA 4407通过抑制根特异性异戊基转移酶(GmIPT3)调节大豆结瘤
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-31 DOI: 10.1111/nph.19222
Kejing Fan, Zhili Wang, Ching-Ching Sze, Yongchao Niu, Fuk-Ling Wong, Man-Wah Li, Hon-Ming Lam

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引用次数: 0
Red macroalgae in the genomic era 基因组时代的红藻
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-30 DOI: 10.1111/nph.19211
Michael Borg, Stacy A. Krueger-Hadfield, Christophe Destombe, Jonas Collén, Agnieszka Lipinska, Susana M. Coelho

Rhodophyta (or red algae) are a diverse and species-rich group that forms one of three major lineages in the Archaeplastida, a eukaryotic supergroup whose plastids arose from a single primary endosymbiosis. Red algae are united by several features, such as relatively small intron-poor genomes and a lack of cytoskeletal structures associated with motility like flagella and centrioles, as well as a highly efficient photosynthetic capacity. Multicellular red algae (or macroalgae) are one of the earliest diverging eukaryotic lineages to have evolved complex multicellularity, yet despite their ecological, evolutionary, and commercial importance, they have remained a largely understudied group of organisms. Considering the increasing availability of red algal genome sequences, we present a broad overview of fundamental aspects of red macroalgal biology and posit on how this is expected to accelerate research in many domains of red algal biology in the coming years.

红藻门(或红藻)是一个多样性和物种丰富的类群,形成了古菌门的三个主要谱系之一,古菌门是一个真核超类群,其质体来源于单一的初级内共生。红藻有几个特征,如相对较小的内含子贫乏的基因组,缺乏与运动相关的细胞骨架结构,如鞭毛和中心粒,以及高效的光合能力。多细胞红藻(或大型藻类)是最早进化出复杂多细胞性的分化真核生物谱系之一,尽管它们在生态、进化和商业上具有重要意义,但它们仍然是一组研究不足的生物。考虑到红藻基因组序列的可用性越来越高,我们对红藻生物学的基本方面进行了广泛的概述,并假设这将如何在未来几年加速红藻生物学许多领域的研究。
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引用次数: 0
A genome-scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost–benefit of nitrogen fixation 大豆和重氮慢生根瘤菌的基因组级代谢重建揭示了固氮的成本效益
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-30 DOI: 10.1111/nph.19203
Bethany L. Holland, Megan L. Matthews, Pedro Bota, Lee J. Sweetlove, Stephen P. Long, George C. diCenzo

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引用次数: 0
How deep should we go to understand roots at the top of the world? 我们应该深入到什么程度才能理解世界之巅的根源?
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-26 DOI: 10.1111/nph.19220
S?ren E. Weber, Colleen M. Iversen

Informed by vegetation maps across high-latitude landscapes, terrestrial biosphere models are a tool that can be used to predict changes in the composition and function of vegetation, above- and belowground, across the land surface in response to changing environmental conditions. However, terrestrial biosphere models represent vegetation characteristics at a finer grain than mapped vegetation communities. These models group plant species that colonize high-latitude biomes by their functional trait variation into plant functional types (PFTs) that characterize the impacts of plant species on, and their response to changes in, their surrounding abiotic and biotic environment. Blume-Werry et al. (2023) found that vegetation mapping units that broadly incorporate multiple plant species and functional types are too coarse, or encompass too much biological variation, to fully capture belowground plant trait variation. However, they did find that they could successfully cluster rooting depth observations into ‘Root Profile Types’, suggesting that modeling PFTs may be a useful tool to characterize above- and belowground linkages across high-latitude environments.

In many arctic and boreal ecosystems, plant roots are constrained by permafrost to a shallow ‘active layer’ of soil that thaws progressively over the course of each growing season. Blume-Werry et al. (2023) identified active layer thickness and the closely related minimum temperature of the coldest month as two of three main abiotic drivers constraining rooting depth distribution in their analysis (a third, cation exchange capacity, is more indicative of nutrient availability than a physical impediment). Furthermore, waterlogging can limit root distribution to surface, oxic soils, and can lead to a thick layer of poorly decomposed, organic peat at the soil surface with different characteristics from mineral soils (Fig. 1; Walker et al., 2003). Indeed, Blume-Werry et al. (2023) found that despite similarities in species composition between wetland and graminoid tundra in CAVM mapping units, rooting depth in wetland tundra was shallower than graminoid tundra. This may indicate that waterlogged conditions can constrain rooting depth distribution, even in vegetation communities dominated by species with aerenchymatous roots. Ranging from rootless mosses and plant-like lichens to vascular graminoids and shrubs, and deciduous and evergreen trees, PFTs inhabiting the arctic tundra and boreal forest vary in their rooting depth distributions, their interactions with soil microbiota, and their ratio of belowground to aboveground tissues (e.g. root : shoot ratio; Chapin et al., 1996). However, terrestrial biosphere models have often neglected the unique characteristics of the species that colonize high-latitude biomes, especially belowground (Iversen et al., 2015, 2018

根据高纬度景观的植被图,陆地生物圈模型是一种工具,可用于预测地表上和地下植被组成和功能的变化,以应对不断变化的环境条件。然而,陆地生物圈模型比绘制的植被群落更精细地代表了植被特征。这些模型将通过功能特征变化定居在高纬度生物群落中的植物物种分为植物功能类型(PFTs),PFTs表征了植物物种对周围非生物和生物环境变化的影响及其对变化的反应。Blume Werry等人。(2023)发现,广泛包含多种植物物种和功能类型的植被制图单元过于粗糙,或包含了太多的生物变异,无法完全捕捉地下植物特征变异。然而,他们确实发现,他们可以成功地将生根深度观测结果聚类为“根剖面类型”,这表明PFT建模可能是一个有用的工具,可以用来表征高纬度环境中的地上和地下联系。在许多北极和北方生态系统中,植物根系被永久冻土限制在一层浅的“活动层”土壤中,在每个生长季节逐渐融化。Blume Werry等人。(2023)在他们的分析中确定,活性层厚度和最冷月的密切相关的最低温度是限制生根深度分布的三个主要非生物驱动因素中的两个(第三个,阳离子交换能力,更能表明营养物质的可用性,而不是物理障碍)。此外,内涝会限制根系在表层有毒土壤中的分布,并会在土壤表面形成一层厚厚的分解不良的有机泥炭,其特征与矿物土壤不同(图1;Walker等人,2003年)。(2023)发现,尽管在CAVM绘图单元中,湿地和类禾本科苔原的物种组成相似,但湿地苔原的生根深度比类禾本科冻土带浅。这可能表明,积水条件会限制生根深度的分布,即使在由具有通气性根系的物种主导的植被群落中也是如此。从无根苔藓和植物状地衣到维管类禾本科植物和灌木,以及落叶和常绿树木,栖息在北极苔原和北方森林中的PFT在生根深度分布、与土壤微生物群的相互作用以及地下组织与地上组织的比例(如根 : 芽率;Chapin等人。,1996)。然而,陆地生物圈模型往往忽视了定居在高纬度生物群落,特别是地下的物种的独特特征(Iversen等人,20152018)。而Blume-Werry等人。(2023)没有发现CAVM植被分类可以用于预测和缩放泛北极地区的生根深度分布,他们的方法可以在模型中进一步完善,将苔原植物的生根深度分配与周围土壤特征联系起来(Drewniak,2019)。预测北高纬度广阔地区地下形态和功能的能力是一个复杂的问题,涉及空间和时间尺度,包括生物和环境因素。作者建议通过考虑“根函数类型”来向前推进。在这里,我们提出了一些额外的前进道路,以便我们作为地下研究社区能够找到联系,从而解锁我们对世界快速变化地区地下过程的理解和预测。Blume Werry等人。(2023)承担了从整个泛北极地区观测到的地上植被群落组成预测根系形态和功能的重要而艰巨的挑战。Blume Werry等人的植被图无法捕捉根系深度的大规模变化,以及随之而来的模拟碳排放的差异。源于多种可能的来源,尤其是这些地图是地上植被。作者提出的一个解决方案是根据地下而不是地上的特征对生态系统进行分类。了解地下环境在北极和北方生态系统中的作用可能需要一种以地下环境为重点的方法,并结合遥感(Blume Werry et al.,2023;Yang et al.,2021)、机械建模、机器学习(Langford et al.,2019;施等人,2021;Sulman等人,2021),以及与实证研究人员的跨学科合作(Sulman等人,2021;Blume Werry等人,2023)。
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引用次数: 0
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