New Phytologist最新文献

Understanding isotope fractionation mechanisms is fundamental for analyses of plant ecophysiology and paleoclimate based on tree-ring isotope data. To gain new insights into isotope fractionation, we analysed intramolecular ¹³C discrimination in tree-ring glucose (Δ_i', i = C-1 to C-6) and metabolic deuterium fractionation at H¹ and H² (ε_met) combinedly. This dual-isotope approach was used for isotope-signal deconvolution. We found evidence for metabolic processes affecting Δ₁' and Δ₃', which respond to air vapour pressure deficit (VPD), and processes affecting Δ₁', Δ₂', and ε_met, which respond to precipitation but not VPD. These relationships exhibit change points dividing a period of homeostasis (1961-1980) from a period of metabolic adjustment (1983-1995). Homeostasis may result from sufficient groundwater availability. Additionally, we found Δ₅' and Δ₆' relationships with radiation and temperature, which are temporally stable and consistent with previously proposed isotope fractionation mechanisms. Based on the multitude of climate covariables, intramolecular carbon isotope analysis has a remarkable potential for climate reconstruction. While isotope fractionation beyond leaves is currently considered to be constant, we propose significant parts of the carbon and hydrogen isotope variation in tree-ring glucose originate in stems (precipitation-dependent signals). As basis for follow-up studies, we propose mechanisms introducing Δ₁', Δ₂', Δ₃', and ε_met variability.

The potential for widespread sink-limited plant growth has received increasing attention in the literature in the past few years. Despite recent evidence for sink limitations to plant growth, there are reasons to be cautious about a sink-limited world view. First, source-limited vegetation models do a reasonable job at capturing geographic patterns in plant productivity and responses to resource limitations. Second, from an evolutionary perspective, it is nonadaptive for plants to invest in increasing carbon assimilation if growth is primarily sink-limited. In this review, we synthesize the potential evidence for and underlying physiology of sink limitation across terrestrial ecosystems and contrast mechanisms of sink limitation with those of source-limited productivity. We highlight evolutionary restrictions on the magnitude of sink limitation at the organismal level. We also detail where mechanisms regulating sink limitation at the organismal and ecosystem scale (e.g. the terrestrial carbon sink) diverge. Although we find that there is currently no direct evidence for widespread organismal sink limitation, we propose a series of follow-up growth chamber manipulations, systematized measurements, and modeling experiments targeted at diagnosing nonadaptive buildup of excess nonstructural carbohydrates that will help illuminate the prevalence and magnitude of organismal sink limitation.

Villins are versatile, multifunctional actin regulatory proteins. They promote actin stabilization and remodeling mainly via their actin bundling and Ca²⁺-dependent severing activities, respectively. Arabidopsis subclass II and III villins normally coexist in cells, but the biological significance of their coexistence remains unknown. Here we demonstrate that subclass II villin binds to Ca²⁺ with high affinity and exhibits strong severing but weak bundling activity compared to subclass III villin. Subclass II villin plays a dominant role in promoting actin remodeling, which requires its Ca²⁺-dependent severing activity. Subclass II villin is also strictly required for physiological processes including oriented organ growth and stress tolerance. By comparison, subclass III villin binds to Ca²⁺ with low affinity and exhibits weak severing but strong bundling activity, and acts as the major player in controlling actin stabilization and organization. Thus, we demonstrate that multifunctional villin isovariants have diverged biochemically to ensure exquisite control of the actin cytoskeleton to meet different cellular needs in plants. This study provides new insights into the role of villins in fine-tuning actin dynamics and plant development.

Whole genome duplication (WGD) likely plays an important role in plant macroevolution, and has been implicated in diversification rate shifts, structural innovations, and increased disparity. But the general effects of WGD are challenging to evaluate, in part due to the difficulty of directly comparing morphological patterns across disparate clades. We explored relationships between WGD and the evolution of reproductive complexity across vascular plants using a metric based on the number of reproductive part types. We used multiple regression models to evaluate the relative importance of inferred WGD events, genome size, and a suite of additional variables relating to growth habit and reproductive biology in explaining part type complexity. WGD was a consistent predictor of reproductive complexity only among angiosperms. Across vascular plants generally, reproductive biology, clade identity, and the presence of bisexual strobili (those that produce microsporangiate and megasporangiate organs) were better predictors of complexity. Angiosperms are unique among vascular plants in combining frequent polyploidy with high-reproductive complexity. Whether WGD is mechanistically linked to floral complexity is unclear, but we suggest widespread polyploidy and increased complexity were ultimately facilitated by the evolution of herbaceous growth habits in early angiosperms.

The precise mechanisms by which plant viral proteases interact with and cleave host proteins, thereby participating in virus-host interactions, are not well understood. Potyviruses, the largest group of known plant-infecting RNA viruses, are known to rely on the nuclear inclusion protease a (NIa-Pro) for the processing of viral polyproteins. Here, we demonstrate that the proteolytic activity of NIa-Pro from potyvirus turnip mosaic virus (TuMV) is indispensable for inducing hypersensitive cell death in Nicotiana benthamiana. NIa-Pro targets and degrades the host DEAD-box protein 5 (DBP5) via a specific cleavage motif, which initiates host cell death. Both the silencing of DBP5 and the overexpression of NIa-Pro lead to an increased frequency of stop codon readthrough, which could be potentially harmful to the host, as it may result in the production of aberrant proteins. Unlike the NIa-Pro of most other potyviruses, the NIa-Pro of tobacco etch virus can also degrade DBP5 and trigger cell death, in both pepper and N. benthamiana. Furthermore, we discovered that the TuMV-encoded nuclear inclusion b can counteract NIa-Pro-induced cell death by co-opting DBP5. These findings unveil hitherto uncharacterized roles for plant virus proteases in cleaving host proteins and highlight the role of host DBP5 in modulating plant immunity.

Marine microalgae demonstrate a notable capacity to adapt to high CO₂ and warming in the context of global change. However, the dynamics of their evolutionary processes under simultaneous high CO₂ and warming conditions remain poorly understood. Here, we analyze the dynamics of evolution in experimental populations of a model marine diatom Phaeodactylum tricornutum. We conducted whole-genome resequencing of populations under ambient, high-CO₂, warming and high CO₂ + warming at 2-yr intervals over a 4-yr adaptation period. The common genes selected between 2- and 4-yr adaptation were found to be involved in protein ubiquitination and degradation and the tricarboxylic acid (TCA) cycle, and were consistently selected regardless of the experimental conditions or adaptation duration. The unique genes selected only by 4-yr adaptation function in respiration, fatty acid, and amino acid metabolism, facilitating adaptation to prolonged high CO₂ with warming conditions. Corresponding changes at the metabolomic level, with significant alterations in metabolites abundances involved in these pathways, support the genomic findings. Our study, integrating genomic and metabolomic data, demonstrates that long-term adaptation of microalgae to high CO₂ and/or warming can be characterized by a complex and dynamic genetic process and may advance our understanding of microalgae adaptation to global change.

Rice false smut disease, caused by the fungal pathogen Ustilaginoidea virens, significantly restricts both the production and quality of rice grains. However, the molecular mechanism underlying rice resistance against U. virens remain largely elusive. Transcriptome analysis of rice panicles infected with U. virens revealing the crucial role of genes involved in sakuranetin biosynthesis in conferring resistance to the pathogen. In vitro assays demonstrated that sakuranetin was most effective at inhibiting mycelial growth, spore germination, and host infection by U. virens. The expression of OsNOMT, the key enzyme in sakuranetin biosynthesis, is directly regulated by the transcription factor OsWRKY67. Furthermore, OsMPK6, a mitogen-activated protein kinase, interacts with and phosphorylates OsWRKY67, thereby modulating sakuranetin biosynthesis and resistance to U. virens. Moreover, the exogenous application of synthetic sakuranetin significantly reduces U. virens infection. Our findings reveal that the OsMPK6-OsWRKY67-OsNOMT signaling cascade plays a pivotal role in rice resistance to U. virens by regulating sakuranetin biosynthesis.

Bolting time is an important agronomic trait in lettuce (Lactuca sativa) production. Premature bolting significantly reduces crop quality and marketability. Here, we report map-based cloning and characterization of a LsKN1 gene that controls bolting in lettuce. A segregating population was developed by crossing a crisphead-type cultivar with a stem-type cultivar to genetically map and clone the LsKN1 gene. In the late-bolting parent (crisphead), the LsKN1 was activated by a CACTA-like transposon which was inserted into the first exon of LsKN1. Complementation test, overexpression, and CRISPR/cas9 knockout showed that the activated LsKN1 allele (LsKN1^TP) delays bolting in lettuce. ChIP-seq and phytohormone analysis demonstrated that LsKN1 regulates gibberellin (GA) biosynthesis and response. LsKN1^TP binds to the promoter of the LsGA20ox1 and LsRGA1, and down- and upregulates their expression, respectively. Furthermore, LsRGA1 interacts with LsKN1^TP to enhance the repression of GA biosynthesis. LsOFP6 acts as a safeguard, interacting with LsKN1^TP to prevent excessive inhibition of GA biosynthesis and response during the vegetative-to-reproductive phase transition. The LsKN1-LsOFP6 module orchestrates the GA pathway to regulate bolting time in lettuce, which provides insight into the bolting development in lettuce and offers valuable genetic resources for breeding lettuce varieties resistant to premature bolting.

Fossilized plant-insect herbivore associations provide fundamental information about the assembly of terrestrial communities through geologic time. However, fossil evidence of associations originating in deep time and persisting to the modern day is scarce. We studied the insect herbivore damage found on 284 Eucalyptus frenguelliana leaves from the early Eocene Laguna del Hunco rainforest locality in Argentinean Patagonia and compared damage patterns with those observed on extant, rainforest-associated Eucalyptus species from Australasia (> 10 000 herbarium sheets reviewed). In the fossil material, we identified 28 insect herbivory damage types, including 12 types of external feeding, one of piercing-and-sucking, five of galls, and 10 of mines. All 28 damage types were observed in the herbarium specimens. The finding of all the fossil damage types on extant Eucalyptus specimens suggests long-standing associations between multiple insect herbivore lineages and their host genus spanning 52 million years across the Southern Hemisphere. This long-term persistence, probably enabled through niche conservatism in wet eucalypt forests, demonstrates the imprint of fossil history on the composition of extant insect herbivore assemblages. Although the identities of most insect culprits remain unknown, we provide a list of Eucalyptus species and specific population locations to facilitate their discovery, highlighting the relevance of fossils in discovering extant biodiversity.