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NCR343 is required to maintain the viability of differentiated bacteroids in nodule cells in Medicago truncatula 需要NCR343来维持树干苜蓿根瘤细胞中分化的类杆菌的生存能力
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-08-02 DOI: 10.1111/nph.19180
Fengzhan Gao, Jian Yang, Niu Zhai, Chao Zhang, Xinru Ren, Yating Zeng, Yuhui Chen, Rujin Chen, Huairong Pan

  • Bacteroid (name for rhizobia inside nodule cells) differentiation is a prerequisite for successful nitrogen-fixing symbiosis. In certain legumes, under the regulation of host proteins, for example, a large group of NCR (nodule cysteine rich) peptides, bacteroids undergo irreversible terminal differentiation. This process causes them to lose the ability to propagate inside nodule cells while boosting their competency for nitrogen fixation. How host cells maintain the viability of differentiated bacteroids while maximizing their nitrogen-reducing activities remains elusive.
  • Here, through mutant screen, map-based cloning, and genetic complementation, we find that NCR343 is required for the viability of differentiated bacteroids. In Medicago truncatula debino1 mutant, differentiated bacteroids decay prematurely, and NCR343 is proved to be the casual gene for debino1.
  • NCR343 is mainly expressed in the nodule fixation zone, where bacteroids are differentiated. In nodule cells, mature NCR343 peptide is secreted into the symbiosomes. RNA-Seq assay shows that many stress-responsive genes are significantly induced in debino1 bacteroids. Additionally, a group of stress response-related rhizobium proteins are identified as putative interacting partners of NCR343.
  • In summary, our findings demonstrate that beyond promoting bacteroid differentiation, NCR peptides are also required in maintaining the viability of differentiated bacteroids.
拟杆菌(根瘤细胞内根瘤菌的名称)分化是成功固氮共生的先决条件。在某些豆类中,在宿主蛋白的调节下,例如一大群NCR(富含结节半胱氨酸)肽,类杆菌发生不可逆的末端分化。这一过程导致它们失去在结节细胞内繁殖的能力,同时提高了它们的固氮能力。宿主细胞如何在最大限度地提高其氮还原活性的同时保持分化的类杆菌的生存能力仍然难以捉摸。在这里,通过突变体筛选、基于图谱的克隆和遗传互补,我们发现NCR343是分化类杆菌生存能力所必需的。在Medicago truncatula debino1突变体中,分化的类杆菌过早腐烂,NCR343被证明是debino1的偶然基因。NCR343主要在结节固定区表达,在那里类杆菌分化。在结节细胞中,成熟的NCR343肽被分泌到共生体中。RNA-Seq分析显示,许多应激反应基因在debino1类杆菌中被显著诱导。此外,一组与应激反应相关的根瘤菌蛋白被鉴定为NCR343的假定相互作用伙伴。总之,我们的研究结果表明,除了促进类杆菌分化外,NCR肽也是维持分化类杆菌生存能力所必需的。
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引用次数: 2
The power of patterns: new insights into pattern-triggered immunity 模式的力量:对模式触发免疫的新见解
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-31 DOI: 10.1111/nph.19148
Lin-Jie Shu, Parvinderdeep S. Kahlon, Stefanie Ranf

The plant immune system features numerous immune receptors localized on the cell surface to monitor the apoplastic space for danger signals from a broad range of plant colonizers. Recent discoveries shed light on the enormous complexity of molecular signals sensed by these receptors, how they are generated and removed to maintain cellular homeostasis and immunocompetence, and how they are shaped by host-imposed evolutionary constraints. Fine-tuning receptor sensing mechanisms at the molecular, cellular and physiological level is critical for maintaining a robust but adaptive host barrier to commensal, pathogenic, and symbiotic colonizers alike. These receptors are at the core of any plant-colonizer interaction and hold great potential for engineering disease resistance and harnessing beneficial microbiota to keep crops healthy.

植物免疫系统的特点是定位在细胞表面的许多免疫受体,以监测细胞外基质空间中来自广泛植物定植体的危险信号。最近的发现揭示了这些受体感知的分子信号的巨大复杂性,它们是如何产生和去除以维持细胞稳态和免疫活性的,以及它们是如何被宿主施加的进化限制所塑造的。在分子、细胞和生理水平上微调受体传感机制对于维持对共生、致病和共生定植体的强大但适应性的宿主屏障至关重要。这些受体是任何植物-定植体相互作用的核心,在工程抗病性和利用有益微生物群保持作物健康方面具有巨大潜力。
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引用次数: 2
Recent advances in plant endomembrane research and new microscopical techniques 植物膜研究的新进展及新的显微技术
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-28 DOI: 10.1111/nph.19134
Yonglun Zeng, Zizhen Liang, Zhiqi Liu, Baiying Li, Yong Cui, Caiji Gao, Jinbo Shen, Xiangfeng Wang, Qiong Zhao, Xiaohong Zhuang, Philipp S. Erdmann, Kam-Bo Wong, Liwen Jiang

The endomembrane system consists of various membrane-bound organelles including the endoplasmic reticulum (ER), Golgi apparatus, trans-Golgi network (TGN), endosomes, and the lysosome/vacuole. Membrane trafficking between distinct compartments is mainly achieved by vesicular transport. As the endomembrane compartments and the machineries regulating the membrane trafficking are largely conserved across all eukaryotes, our current knowledge on organelle biogenesis and endomembrane trafficking in plants has mainly been shaped by corresponding studies in mammals and yeast. However, unique perspectives have emerged from plant cell biology research through the characterization of plant-specific regulators as well as the development and application of the state-of-the-art microscopical techniques. In this review, we summarize our current knowledge on the plant endomembrane system, with a focus on several distinct pathways: ER-to-Golgi transport, protein sorting at the TGN, endosomal sorting on multivesicular bodies, vacuolar trafficking/vacuole biogenesis, and the autophagy pathway. We also give an update on advanced imaging techniques for the plant cell biology research.

内膜系统由各种膜结合细胞器组成,包括内质网(ER)、高尔基体、反式高尔基网络(TGN)、内体和溶酶体/液泡。不同腔室之间的膜运输主要通过囊泡运输实现。由于所有真核生物的膜室和调节膜运输的机制在很大程度上是保守的,我们目前对植物细胞器生物发生和膜运输的认识主要是通过对哺乳动物和酵母的相应研究形成的。然而,通过植物特异性调节因子的表征以及最先进的显微技术的发展和应用,植物细胞生物学研究出现了独特的视角。在这篇综述中,我们总结了我们目前对植物膜系统的了解,重点介绍了几种不同的途径:内质网到高尔基体的转运、TGN的蛋白质分选、多泡体的内体分选、液泡运输/液泡生物发生以及自噬途径。对植物细胞生物学研究的先进成像技术进行了综述。
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引用次数: 0
Molecular perspectives on age-related resistance of plants to (viral) pathogens 植物对(病毒)病原体年龄相关抗性的分子观点
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-28 DOI: 10.1111/nph.19131
April DeMell, Veria Alvarado, Herman B. Scholthof

Age-related resistance to microbe invasion is a commonly accepted concept in plant pathology. However, the impact of such age-dependent interactive phenomena is perhaps not yet sufficiently recognized by the broader plant science community. Toward cataloging an understanding of underlying mechanisms, this review explores recent molecular studies and their relevance to the concept. Examples describe differences in genetic background, transcriptomics, hormonal balances, protein-mediated events, and the contribution by short RNA-controlled gene silencing events. Throughout, recent findings with viral systems are highlighted as an illustration of the complexity of the interactions. It will become apparent that instead of uncovering a unifying explanation, we unveiled only trends. Nevertheless, with a degree of confidence, we propose that the process of plant age-related defenses is actively regulated at multiple levels. The overarching goal of this control for plants is to avoid a constitutive waste of resources, especially at crucial metabolically draining early developmental stages.

与年龄相关的对微生物入侵的抗性是植物病理学中普遍接受的概念。然而,这种与年龄相关的相互作用现象的影响可能尚未被更广泛的植物科学界充分认识到。为了对潜在机制的理解进行编目,本文综述了最近的分子研究及其与这一概念的相关性。例子描述了遗传背景、转录组学、激素平衡、蛋白质介导事件以及短rna控制的基因沉默事件的差异。在整个过程中,最近对病毒系统的发现被强调为相互作用复杂性的例证。很明显,我们没有揭示一个统一的解释,而只是揭示了趋势。然而,有一定程度的信心,我们提出植物年龄相关防御过程在多个水平上受到积极调节。这种控制对植物的总体目标是避免资源的构成浪费,特别是在关键的代谢消耗的早期发育阶段。
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引用次数: 0
Accounting for trait variability and coordination in predictions of drought-induced range shifts in woody plants 在木本植物干旱诱导范围变化预测中的性状变异和协调
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-27 DOI: 10.1111/nph.19138
Jordi Martínez-Vilalta, Raúl García-Valdés, Alistair Jump, Albert Vilà-Cabrera, Maurizio Mencuccini

Functional traits offer a promising avenue to improve predictions of species range shifts under climate change, which will entail warmer and often drier conditions. Although the conceptual foundation linking traits with plant performance and range shifts appears solid, the predictive ability of individual traits remains generally low. In this review, we address this apparent paradox, emphasizing examples of woody plants and traits associated with drought responses at the species' rear edge. Low predictive ability reflects the fact not only that range dynamics tend to be complex and multifactorial, as well as uncertainty in the identification of relevant traits and limited data availability, but also that trait effects are scale- and context-dependent. The latter results from the complex interactions among traits (e.g. compensatory effects) and between them and the environment (e.g. exposure), which ultimately determine persistence and colonization capacity. To confront this complexity, a more balanced coverage of the main functional dimensions involved (stress tolerance, resource use, regeneration and dispersal) is needed, and modelling approaches must be developed that explicitly account for: trait coordination in a hierarchical context; trait variability in space and time and its relationship with exposure; and the effect of biotic interactions in an ecological community context.

功能性状为改善气候变化下物种范围变化的预测提供了一条有希望的途径,气候变化将导致更温暖、更干燥的条件。虽然性状与植物生产性能和范围变化之间的联系的概念基础似乎是坚实的,但个体性状的预测能力仍然普遍较低。在这篇综述中,我们解决了这个明显的悖论,强调木本植物的例子和与物种后缘干旱反应相关的性状。低预测能力不仅反映了范围动态的复杂性和多因素性,以及相关性状识别的不确定性和有限的数据可用性,还反映了性状效应的规模和背景依赖性。后者是性状之间(如补偿效应)和性状与环境(如暴露)之间复杂的相互作用的结果,最终决定了持久性和定殖能力。为了应对这种复杂性,需要对所涉及的主要功能维度(应力耐受性、资源利用、再生和扩散)进行更平衡的覆盖,并且必须开发明确考虑以下因素的建模方法:层次背景下的特征协调;性状的时空变异及其与暴露的关系;以及生态群落背景下生物相互作用的影响。
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引用次数: 2
Parallel selection of loss-of-function alleles of Pdh1 orthologous genes in warm-season legumes for pod indehiscence and plasticity is related to precipitation 暖季豆科植物Pdh1同源基因功能缺失等位基因的平行选择与降水有关
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-27 DOI: 10.1111/nph.19150
Bin Yong, Weiwei Zhu, Siming Wei, Bingbing Li, Yan Wang, Nan Xu, Jiangjie Lu, Qingshan Chen, Chaoying He

  • Pod dehiscence facilitates seed dispersal in wild legumes but results in yield loss in cultivated legumes. The evolutionary genetics of the legume pod dehiscence trait remain largely elusive.
  • We characterized the pod dehiscence of chromosome segment substitution lines of Glycine max crossed with Glycine soja and found that the gene underlying the predominant quantitative trait locus (QTL) of soybean pod-shattering trait was Pod dehiscence 1 (Pdh1). A few rare loss-of-function (LoF) Pdh1 alleles were identified in G. soja, while only an allele featuring a premature stop codon was selected for pod indehiscence in cultivated soybean and spread to low-precipitation regions with increased frequency. Moreover, correlated interactions among Pdh1's haplotype, gene expression, and environmental changes for the developmental plasticity of the pod dehiscence trait were revealed in G. max.
  • We found that orthologous Pdh1 genes specifically originated in warm-season legumes and their LoF alleles were then parallel-selected during the domestication of legume crops.
  • Our results provide insights into the convergent evolution of pod dehiscence in warm-season legumes, facilitate an understanding of the intricate interactions between genetic robustness and environmental adaptation for developmental plasticity, and guide the breeding of new legume varieties with pod indehiscence.
豆荚开裂有利于野生豆类的种子传播,但会导致栽培豆类的产量损失。豆荚开裂特性的进化遗传学在很大程度上仍然难以捉摸。我们对大豆与大豆杂交的染色体片段替代品系的裂荚进行了表征,发现大豆裂荚性状的主要数量性状基因座(QTL)为裂荚1(Pdh1)。在大豆中发现了一些罕见的功能丧失(LoF)Pdh1等位基因,而在栽培大豆中只选择了一个具有过早终止密码子的等位基因来进行豆荚不裂,并以增加的频率传播到低降水区。此外,Pdh1的单倍型、基因表达、,揭示了G.max裂荚性状发育可塑性的环境变化。我们发现,在豆科作物的驯化过程中,同源Pdh1基因特异性起源于暖季豆类,然后平行选择了它们的LoF等位基因。我们的研究结果为暖季豆科植物裂荚的趋同进化提供了见解,有助于理解遗传稳健性和环境适应对发育可塑性之间的复杂相互作用,并指导具有裂荚的豆科新品种的选育。
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引用次数: 0
Global hotspots of plant phylogenetic diversity 植物系统发育多样性的全球热点
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-26 DOI: 10.1111/nph.19151
Melanie Tietje, Alexandre Antonelli, Félix Forest, Rafaël Govaerts, Stephen A. Smith, Miao Sun, William J. Baker, Wolf L. Eiserhardt

具有高度独特系统发育多样性(PD)的地区是保护的优先目标。在这里,我们分析了植物PD的全球分布,尽管植物是大多数陆地栖息地的基础和人类生计的关键,但人们对植物PD的了解仍然很少。利用最近完成的全球维管植物综合清单,我们确定了独特植物PD的热点,并验证了三个假设:(1)PD比物种多样性分布更均匀;(2)最高PD的区域(通常称为“热点”)不会使累积PD最大化;(3)需要许多生物群系来最大化累积PD。我们的研究结果支持所有三个假设:覆盖50%的全球植物PD所需的区域是覆盖50%的物种所需区域的两倍以上;累积PD最大化的区域与个体PD突出的区域存在显著差异;虽然(亚)热带湿润森林地区在整个PD热点地区占主导地位,但其他森林类型和开放生物群落也必不可少。在人类世中保护PD(包括保护一些相对物种贫乏的地区)是一项全球性的、日益被认可的责任。在强调了具有突出独特植物PD的国家之后,现在需要进一步分析以充分了解植物PD的全球分布及其在空间尺度上的相关保护要求。
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引用次数: 1
Plasticity in growth is genetically variable and highly conserved across spatial scales in a Mediterranean pine 地中海松生长的可塑性在遗传上是可变的,并且在空间尺度上高度保守
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-25 DOI: 10.1111/nph.19158
Raul de la Mata, Rafael Zas

  • Phenotypic plasticity is a main mechanism for sessile organisms to cope with changing environments. Plasticity is genetically based and can evolve under natural selection so that populations within a species show distinct phenotypic responses to environment. An important question that remains elusive is whether the intraspecific variation in plasticity at different spatial scales is independent from each other.
  • To test whether variation in plasticity to macro- and micro-environmental variation is related among each other, we used growth data of 25 Pinus pinaster populations established in seven field common gardens in NW Spain. Phenotypic plasticity to macro-environmental variation was estimated across test sites while plasticity to micro-environmental variation was estimated by using semivariography and kriging for modeling within-site heterogeneity.
  • We provide empirical evidence of among-population variation in the magnitude of plastic responses to both micro- and macro-environmental variation. Importantly, we found that such responses were positively correlated across spatial scales.
  • Selection for plasticity at one scale of environmental variation may impact the expression of plasticity at other scales, having important consequences on the ability of populations to buffer climate change. These results improve our understanding of the ecological drivers underlying the expression of phenotypic plasticity.
表型可塑性是固着生物应对环境变化的主要机制。可塑性是基于遗传的,可以在自然选择下进化,因此一个物种内的种群对环境表现出不同的表型反应。一个仍然难以捉摸的重要问题是,在不同的空间尺度上,可塑性的种内变异是否相互独立。为了测试可塑性的变化与宏观和微观环境变化之间是否相互关联,我们使用了在西班牙西北部七个野外常见花园中建立的25个松种群的生长数据。各试验场地对宏观环境变化的表型可塑性进行了估计,而对微观环境变化的可塑性则通过使用半变差法和克里格法对场地内异质性建模进行了估计。我们提供了人口之间对微观和宏观环境变化的塑性反应幅度变化的经验证据。重要的是,我们发现这种反应在空间尺度上呈正相关。在一个环境变化尺度上选择可塑性可能会影响其他尺度上可塑性的表达,对种群缓冲气候变化的能力产生重要影响。这些结果提高了我们对表型可塑性表达背后的生态驱动因素的理解。
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引用次数: 0
Mosaic assembly of regulatory programs for vascular cambial growth: a view from the Early Devonian 血管形成层生长调控程序的镶嵌组合:从早泥盆纪的观点
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-25 DOI: 10.1111/nph.19146
Kelly C. Pfeiler, Alexandru M. F. Tomescu

  • Evidence for secondary growth extends into the Early Devonian, 407 million years ago, raising questions about tempo and mode of origination of this key developmental feature. To address such questions, we analyze anatomy in the four oldest fossil plants with well-characterized woody tissues; one of these represents a new genus, described here formally.
  • The new fossil is documented using the cellulose acetate peel technique and associated methods. We use the paradigm of structural fingerprints to identify developmental components of cambial growth based on fossil anatomy. We integrate developmental inferences within a theoretical framework of modular regulation of secondary growth.
  • The fossils possess structural fingerprints consistent with four different combinations of regulatory mechanisms (modules) acting in cambial growth, representing four distinct modes of secondary growth.
  • The different modes of secondary growth demonstrate that cambial growth is an assemblage of regulatory modules whose deployment followed a mosaic pattern across woody plants, which may represent ancestors of younger lineages that exhibit woody growth. The diverse modes of wood development occupy a wide morphospace in the anatomy of wood in the Early Devonian, suggesting that the origins of secondary growth and of its modular components pre-date this interval.
次生生长的证据延伸到早泥盆纪,407 万年前,人们对这一关键发展特征的起源速度和模式提出了疑问。为了解决这些问题,我们分析了四种最古老的化石植物的解剖结构,这些植物具有良好的木质组织特征;其中一个代表一个新属,在这里正式描述。使用醋酸纤维素剥离技术和相关方法记录了新化石。我们使用结构指纹的范式来识别基于化石解剖的形成层生长的发育成分。我们将发展推断整合在二次生长模块化调节的理论框架内。这些化石具有与作用于形成层生长的四种不同调节机制(模块)组合一致的结构指纹,代表了四种不同的次生生长模式。不同的次生生长模式表明,形成层生长是一个调节模块的集合,其在木本植物中的部署遵循马赛克模式,这可能代表表现出木质生长的年轻谱系的祖先。在早泥盆纪的木材解剖中,不同的木材发育模式占据了广阔的形态空间,这表明次生生长及其模块化成分的起源早于这一时期。
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引用次数: 0
Compartment-specific Ca2+ imaging in the green alga Chlamydomonas reinhardtii reveals high light-induced chloroplast Ca2+ signatures 绿藻莱茵衣藻的特定区室 Ca2+ 成像揭示了高光诱导叶绿体 Ca2+ 特征
IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-07-24 DOI: 10.1111/nph.19142
Matteo Pivato, Matteo Grenzi, Alex Costa, Matteo Ballottari

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引用次数: 0
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New Phytologist
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