Pub Date : 2024-06-06DOI: 10.1016/j.mbs.2024.109230
Xuan Dai , Xiaotian Wu , Jiao Jiang , Libin Rong
In addition to the traditional transmission route via the biting-and-defecating process, non-human host predation of triatomines is recognized as another significant avenue for Chagas disease transmission. In this paper, we develop an eco-epidemiological model to investigate the impact of predation on the disease’s spread. Two critical thresholds, (the basic reproduction number of triatomines) and (the basic reproduction number of the Chagas parasite), are derived to delineate the model’s dynamics. Through the construction of appropriate Lyapunov functions and the application of the Bendixson–Dulac theorem, the global asymptotic stabilities of the equilibria are fully established. The vector-free equilibrium is globally stable when . , the disease-free equilibrium, is globally stable when and , while the endemic equilibrium is globally stable when both and . Numerical simulations highlight that the degree of host predation on triatomines, influenced by non-human hosts activities, can variably increase or decrease the Chagas disease transmission risk. Specifically, low or high levels of host predation can reduce to below unity, while intermediate levels may increase the infected host populations, albeit with a reduction in . These findings highlight the role played by non-human hosts and offer crucial insights for the prevention and control of Chagas disease.
{"title":"Modeling the impact of non-human host predation on the transmission of Chagas disease","authors":"Xuan Dai , Xiaotian Wu , Jiao Jiang , Libin Rong","doi":"10.1016/j.mbs.2024.109230","DOIUrl":"10.1016/j.mbs.2024.109230","url":null,"abstract":"<div><p>In addition to the traditional transmission route via the biting-and-defecating process, non-human host predation of triatomines is recognized as another significant avenue for Chagas disease transmission. In this paper, we develop an eco-epidemiological model to investigate the impact of predation on the disease’s spread. Two critical thresholds, <span><math><msubsup><mrow><mi>R</mi></mrow><mrow><mi>v</mi></mrow><mrow><mi>p</mi></mrow></msubsup></math></span> (the basic reproduction number of triatomines) and <span><math><msubsup><mrow><mi>R</mi></mrow><mrow><mn>0</mn></mrow><mrow><mi>p</mi></mrow></msubsup></math></span> (the basic reproduction number of the Chagas parasite), are derived to delineate the model’s dynamics. Through the construction of appropriate Lyapunov functions and the application of the Bendixson–Dulac theorem, the global asymptotic stabilities of the equilibria are fully established. The vector-free equilibrium <span><math><msub><mrow><mi>E</mi></mrow><mrow><mn>0</mn></mrow></msub></math></span> is globally stable when <span><math><mrow><msubsup><mrow><mi>R</mi></mrow><mrow><mi>v</mi></mrow><mrow><mi>p</mi></mrow></msubsup><mo><</mo><mn>1</mn></mrow></math></span>. <span><math><msub><mrow><mi>E</mi></mrow><mrow><mn>1</mn></mrow></msub></math></span>, the disease-free equilibrium, is globally stable when <span><math><mrow><msubsup><mrow><mi>R</mi></mrow><mrow><mi>v</mi></mrow><mrow><mi>p</mi></mrow></msubsup><mo>></mo><mn>1</mn></mrow></math></span> and <span><math><mrow><msubsup><mrow><mi>R</mi></mrow><mrow><mn>0</mn></mrow><mrow><mi>p</mi></mrow></msubsup><mo><</mo><mn>1</mn></mrow></math></span>, while the endemic equilibrium <span><math><msup><mrow><mi>E</mi></mrow><mrow><mo>∗</mo></mrow></msup></math></span> is globally stable when both <span><math><mrow><msubsup><mrow><mi>R</mi></mrow><mrow><mi>v</mi></mrow><mrow><mi>p</mi></mrow></msubsup><mo>></mo><mn>1</mn></mrow></math></span> and <span><math><mrow><msubsup><mrow><mi>R</mi></mrow><mrow><mn>0</mn></mrow><mrow><mi>p</mi></mrow></msubsup><mo>></mo><mn>1</mn></mrow></math></span>. Numerical simulations highlight that the degree of host predation on triatomines, influenced by non-human hosts activities, can variably increase or decrease the Chagas disease transmission risk. Specifically, low or high levels of host predation can reduce <span><math><msubsup><mrow><mi>R</mi></mrow><mrow><mn>0</mn></mrow><mrow><mi>p</mi></mrow></msubsup></math></span> to below unity, while intermediate levels may increase the infected host populations, albeit with a reduction in <span><math><msubsup><mrow><mi>R</mi></mrow><mrow><mn>0</mn></mrow><mrow><mi>p</mi></mrow></msubsup></math></span>. These findings highlight the role played by non-human hosts and offer crucial insights for the prevention and control of Chagas disease.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109230"},"PeriodicalIF":4.3,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141294092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This systematic review, conducted following the PRISMA guidelines, scrutinizes mathematical models employed in the study of Lassa fever. The analysis revealed the inherent heterogeneity in both models and data, posing significant challenges to parameter estimation. While health and behavioral interventions exhibit promise in mitigating the disease’s spread, their efficacy is contingent upon contextual factors. Identified through this review are critical gaps, limitations, and avenues for future research, necessitating increased harmonization and standardization in modeling approaches. The considerations of seasonal and spatial variations emerge as crucial elements demanding targeted investigation. The perpetual threat of emerging diseases, coupled with the enduring public health impact of Lassa fever, underscores the imperative for sustained research endeavors and investments in mathematical modeling. The conclusion underscored that while mathematical modeling remains an invaluable tool in the combat against Lassa fever, its optimal utilization mandates multidisciplinary collaboration, refined data collection methodologies, and an enriched understanding of the intricate disease dynamics. This comprehensive approach is essential for effectively reducing the burden of Lassa fever and safeguarding the health of vulnerable populations.
{"title":"A systematic review of mathematical models of Lassa fever","authors":"Praise-God Uchechukwu Madueme, Faraimunashe Chirove","doi":"10.1016/j.mbs.2024.109227","DOIUrl":"10.1016/j.mbs.2024.109227","url":null,"abstract":"<div><p>This systematic review, conducted following the PRISMA guidelines, scrutinizes mathematical models employed in the study of Lassa fever. The analysis revealed the inherent heterogeneity in both models and data, posing significant challenges to parameter estimation. While health and behavioral interventions exhibit promise in mitigating the disease’s spread, their efficacy is contingent upon contextual factors. Identified through this review are critical gaps, limitations, and avenues for future research, necessitating increased harmonization and standardization in modeling approaches. The considerations of seasonal and spatial variations emerge as crucial elements demanding targeted investigation. The perpetual threat of emerging diseases, coupled with the enduring public health impact of Lassa fever, underscores the imperative for sustained research endeavors and investments in mathematical modeling. The conclusion underscored that while mathematical modeling remains an invaluable tool in the combat against Lassa fever, its optimal utilization mandates multidisciplinary collaboration, refined data collection methodologies, and an enriched understanding of the intricate disease dynamics. This comprehensive approach is essential for effectively reducing the burden of Lassa fever and safeguarding the health of vulnerable populations.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109227"},"PeriodicalIF":4.3,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0025556424000877/pdfft?md5=ea7fe5fa53850c90a5fb265f12c6a8af&pid=1-s2.0-S0025556424000877-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141285759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-03DOI: 10.1016/j.mbs.2024.109226
Konstantinos Mamis , Mohammad Farazmand
We consider compartmental models of communicable disease with uncertain contact rates. Stochastic fluctuations are often added to the contact rate to account for uncertainties. White noise, which is the typical choice for the fluctuations, leads to significant underestimation of the disease severity. Here, starting from reasonable assumptions on the social behavior of individuals, we model the contacts as a Markov process which takes into account the temporal correlations present in human social activities. Consequently, we show that the mean-reverting Ornstein–Uhlenbeck (OU) process is the correct model for the stochastic contact rate. We demonstrate the implication of our model on two examples: a Susceptibles–Infected–Susceptibles (SIS) model and a Susceptibles–Exposed–Infected–Removed (SEIR) model of the COVID-19 pandemic and compare the results to the available US data from the Johns Hopkins University database. In particular, we observe that both compartmental models with white noise uncertainties undergo transitions that lead to the systematic underestimation of the spread of the disease. In contrast, modeling the contact rate with the OU process significantly hinders such unrealistic noise-induced transitions. For the SIS model, we derive its stationary probability density analytically, for both white and correlated noise. This allows us to give a complete description of the model’s asymptotic behavior as a function of its bifurcation parameters, i.e., the basic reproduction number, noise intensity, and correlation time. For the SEIR model, where the probability density is not available in closed form, we study the transitions using Monte Carlo simulations. Our modeling approach can be used to quantify uncertain parameters in a broad range of biological systems.
我们考虑的是接触率不确定的传染病分区模型。为了考虑不确定性,通常会在接触率中加入随机波动。白噪声是波动的典型选择,会导致对疾病严重性的严重低估。在这里,我们从对个体社会行为的合理假设出发,将接触建模为马尔可夫过程,并将人类社会活动中存在的时间相关性考虑在内。因此,我们证明了均值回复的奥恩斯坦-乌伦贝克(OU)过程是随机接触率的正确模型。我们用两个例子来证明我们的模型的意义:COVID-19 大流行病的易感人群-感染人群-易感人群(SIS)模型和易感人群-暴露人群-感染人群-移出人群(SEIR)模型,并将结果与约翰-霍普金斯大学数据库中现有的美国数据进行比较。我们特别注意到,这两种具有白噪声不确定性的分区模型都会发生转变,导致对疾病传播的系统性低估。与此相反,用 OU 过程建立接触率模型则能显著减少这种由噪声引起的不切实际的转变。对于 SIS 模型,我们对白噪声和相关噪声的静态概率密度进行了分析推导。这样,我们就能完整地描述该模型的渐近行为是其分岔参数(即基本繁殖数、噪声强度和相关时间)的函数。对于 SEIR 模型,由于其概率密度无法以封闭形式获得,我们采用蒙特卡罗模拟法研究了其转换过程。我们的建模方法可用于量化各种生物系统中的不确定参数。
{"title":"Modeling correlated uncertainties in stochastic compartmental models","authors":"Konstantinos Mamis , Mohammad Farazmand","doi":"10.1016/j.mbs.2024.109226","DOIUrl":"10.1016/j.mbs.2024.109226","url":null,"abstract":"<div><p>We consider compartmental models of communicable disease with uncertain contact rates. Stochastic fluctuations are often added to the contact rate to account for uncertainties. White noise, which is the typical choice for the fluctuations, leads to significant underestimation of the disease severity. Here, starting from reasonable assumptions on the social behavior of individuals, we model the contacts as a Markov process which takes into account the temporal correlations present in human social activities. Consequently, we show that the mean-reverting Ornstein–Uhlenbeck (OU) process is the correct model for the stochastic contact rate. We demonstrate the implication of our model on two examples: a Susceptibles–Infected–Susceptibles (SIS) model and a Susceptibles–Exposed–Infected–Removed (SEIR) model of the COVID-19 pandemic and compare the results to the available US data from the Johns Hopkins University database. In particular, we observe that both compartmental models with white noise uncertainties undergo transitions that lead to the systematic underestimation of the spread of the disease. In contrast, modeling the contact rate with the OU process significantly hinders such unrealistic noise-induced transitions. For the SIS model, we derive its stationary probability density analytically, for both white and correlated noise. This allows us to give a complete description of the model’s asymptotic behavior as a function of its bifurcation parameters, i.e., the basic reproduction number, noise intensity, and correlation time. For the SEIR model, where the probability density is not available in closed form, we study the transitions using Monte Carlo simulations. Our modeling approach can be used to quantify uncertain parameters in a broad range of biological systems.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109226"},"PeriodicalIF":4.3,"publicationDate":"2024-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141263668","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1016/j.mbs.2024.109222
Xinyue Evelyn Zhao , Wenrui Hao
Reaction–diffusion equations serve as fundamental tools in describing pattern formation in biology. In these models, nonuniform steady states often represent stationary spatial patterns. Notably, these steady states are not unique, and unveiling them mathematically presents challenges. In this paper, we introduce a framework based on bifurcation theory to address pattern formation problems, specifically examining whether nonuniform steady states can bifurcate from trivial ones. Furthermore, we employ linear stability analysis to investigate the stability of the trivial steady-state solutions. We apply the method to two classic reaction–diffusion models: the Schnakenberg model and the Gray–Scott model. For both models, our approach effectively reveals many nonuniform steady states and assesses the stability of the trivial solution. Numerical computations are also presented to validate the solution structures for these models.
{"title":"Emergence of non-trivial solutions from trivial solutions in reaction–diffusion equations for pattern formation","authors":"Xinyue Evelyn Zhao , Wenrui Hao","doi":"10.1016/j.mbs.2024.109222","DOIUrl":"10.1016/j.mbs.2024.109222","url":null,"abstract":"<div><p>Reaction–diffusion equations serve as fundamental tools in describing pattern formation in biology. In these models, nonuniform steady states often represent stationary spatial patterns. Notably, these steady states are not unique, and unveiling them mathematically presents challenges. In this paper, we introduce a framework based on bifurcation theory to address pattern formation problems, specifically examining whether nonuniform steady states can bifurcate from trivial ones. Furthermore, we employ linear stability analysis to investigate the stability of the trivial steady-state solutions. We apply the method to two classic reaction–diffusion models: the Schnakenberg model and the Gray–Scott model. For both models, our approach effectively reveals many nonuniform steady states and assesses the stability of the trivial solution. Numerical computations are also presented to validate the solution structures for these models.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109222"},"PeriodicalIF":4.3,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141238960","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-29DOI: 10.1016/j.mbs.2024.109224
Murat An , Mesut Akyuz , Ozel Capik , Cigdem Yalcin , Richard Bertram , Elanur Aydin Karatas , Omer Faruk Karatas , Vehpi Yildirim
Gain of function mutations in the pore forming Kir6 subunits of the ATP sensitive K+ channels (K(ATP) channels) of pancreatic β-cells are the major cause of neonatal diabetes in humans. In this study, we show that in insulin secreting mouse β-cell lines, gain of function mutations in Kir6.1 result in a significant connexin36 (Cx36) overexpression, which form gap junctional connections and mediate electrical coupling between β-cells within pancreatic islets. Using computational modeling, we show that upregulation in Cx36 might play a functional role in the impairment of glucose stimulated Ca2+ oscillations in a cluster of β-cells with Kir6.1 gain of function mutations in their K(ATP) channels (GoF-K(ATP) channels). Our results show that without an increase in Cx36 expression, a gain of function mutation in Kir6.1 might not be sufficient to diminish glucose stimulated Ca2+ oscillations in a β-cell cluster. We also show that a reduced Cx36 expression, which leads to loss of coordination in a wild-type β-cell cluster, restores coordinated Ca2+ oscillations in a β-cell cluster with GoF-K(ATP) channels. Our results indicate that in a heterogenous β-cell cluster with GoF-K(ATP) channels, there is an inverted u-shaped nonmonotonic relation between the cluster activity and Cx36 expression. These results show that in a neonatal diabetic β-cell model, gain of function mutations in the Kir6.1 cause Cx36 overexpression, which aggravates the impairment of glucose stimulated Ca2+ oscillations.
{"title":"Gain of function mutation in K(ATP) channels and resulting upregulation of coupling conductance are partners in crime in the impairment of Ca2+ oscillations in pancreatic ß-cells","authors":"Murat An , Mesut Akyuz , Ozel Capik , Cigdem Yalcin , Richard Bertram , Elanur Aydin Karatas , Omer Faruk Karatas , Vehpi Yildirim","doi":"10.1016/j.mbs.2024.109224","DOIUrl":"10.1016/j.mbs.2024.109224","url":null,"abstract":"<div><p>Gain of function mutations in the pore forming Kir6 subunits of the ATP sensitive K<sup>+</sup> channels (K(ATP) channels) of pancreatic β-cells are the major cause of neonatal diabetes in humans. In this study, we show that in insulin secreting mouse β-cell lines, gain of function mutations in Kir6.1 result in a significant connexin36 (Cx36) overexpression, which form gap junctional connections and mediate electrical coupling between β-cells within pancreatic islets. Using computational modeling, we show that upregulation in Cx36 might play a functional role in the impairment of glucose stimulated Ca<sup>2+</sup> oscillations in a cluster of β-cells with Kir6.1 gain of function mutations in their K(ATP) channels (GoF-K(ATP) channels). Our results show that without an increase in Cx36 expression, a gain of function mutation in Kir6.1 might not be sufficient to diminish glucose stimulated Ca<sup>2+</sup> oscillations in a β-cell cluster. We also show that a reduced Cx36 expression, which leads to loss of coordination in a wild-type β-cell cluster, restores coordinated Ca<sup>2+</sup> oscillations in a β-cell cluster with GoF-K(ATP) channels. Our results indicate that in a heterogenous β-cell cluster with GoF-K(ATP) channels, there is an inverted u-shaped nonmonotonic relation between the cluster activity and Cx36 expression. These results show that in a neonatal diabetic β-cell model, gain of function mutations in the Kir6.1 cause Cx36 overexpression, which aggravates the impairment of glucose stimulated Ca<sup>2+</sup> oscillations.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109224"},"PeriodicalIF":4.3,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0025556424000841/pdfft?md5=e53a8ca09d9411206ab239b53d8e5aab&pid=1-s2.0-S0025556424000841-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141184857","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-29DOI: 10.1016/j.mbs.2024.109223
Huan Yang , Yuanshun Tan , Sanyi Tang
Integrated Pest Management (IPM) poses a challenge in determining the optimal timing of pesticide sprays to ensure that pest populations remain below the Economic Injury Level (EIL), due to the long-term residual effects of many pesticides and the delayed responses of pest populations to pesticide sprays. To address this issue, a specific pesticide kill-rate function is incorporated into a deterministic exponential growth model and a subsequent stochastic model. The findings suggest the existence of an optimal pesticide spraying cycle that can periodically control pests below the EIL. The results regarding stochasticity indicate that random fluctuations promote pest extinction and ensure that the pest population, under the optimal cycle, does not exceed the EIL on average, even with a finite number of IPM strategies. All those confirm that the modeling approach can accurately reveal the intrinsic relationship between the two key indicators Economic Threshold and EIL in the IPM strategy, and further realize the precise characterization of the residual effect and delayed response of pesticide application.
由于许多杀虫剂的长期残留效应以及害虫种群对杀虫剂喷洒的延迟反应,害虫综合治理(IPM)在确定杀虫剂喷洒的最佳时机以确保害虫种群数量保持在经济损失水平(EIL)以下方面面临挑战。为解决这一问题,将特定的杀虫剂杀灭率函数纳入了一个确定性指数增长模型和随后的随机模型。研究结果表明,存在一个最佳杀虫剂喷洒周期,可以定期将害虫控制在 EIL 以下。有关随机性的结果表明,随机波动会促进害虫灭绝,并确保在最佳周期下,即使采用有限数量的虫害综合防治策略,害虫数量平均也不会超过 EIL。所有这些都证实了建模方法能够准确揭示 IPM 策略中经济阈值和 EIL 这两个关键指标之间的内在关系,并进一步实现农药施用的残留效应和延迟响应的精确表征。
{"title":"From economic threshold to economic injury level: Modeling the residual effect and delayed response of pesticide application","authors":"Huan Yang , Yuanshun Tan , Sanyi Tang","doi":"10.1016/j.mbs.2024.109223","DOIUrl":"10.1016/j.mbs.2024.109223","url":null,"abstract":"<div><p>Integrated Pest Management (IPM) poses a challenge in determining the optimal timing of pesticide sprays to ensure that pest populations remain below the Economic Injury Level (EIL), due to the long-term residual effects of many pesticides and the delayed responses of pest populations to pesticide sprays. To address this issue, a specific pesticide kill-rate function is incorporated into a deterministic exponential growth model and a subsequent stochastic model. The findings suggest the existence of an optimal pesticide spraying cycle that can periodically control pests below the EIL. The results regarding stochasticity indicate that random fluctuations promote pest extinction and ensure that the pest population, under the optimal cycle, does not exceed the EIL on average, even with a finite number of IPM strategies. All those confirm that the modeling approach can accurately reveal the intrinsic relationship between the two key indicators Economic Threshold and EIL in the IPM strategy, and further realize the precise characterization of the residual effect and delayed response of pesticide application.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"373 ","pages":"Article 109223"},"PeriodicalIF":4.3,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141184828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-24DOI: 10.1016/j.mbs.2024.109221
Timothy J. Pervenecki , Sharon Bewick , Garrett Otto , William F. Fagan , Bingtuan Li
We consider a hybrid model of an annual species with the timing of a stage transition governed by density dependent phenology. We show that the model can produce a strong Allee effect as well as overcompensation. The density dependent probability distribution that describes how population emergence is spread over time plays an important role in determining population dynamics. Our extensive numerical simulations with a density dependent gamma distribution indicate very rich population dynamics, from stable/unstable equilibria, limit cycles, to chaos.
{"title":"Allee effects introduced by density dependent phenology","authors":"Timothy J. Pervenecki , Sharon Bewick , Garrett Otto , William F. Fagan , Bingtuan Li","doi":"10.1016/j.mbs.2024.109221","DOIUrl":"10.1016/j.mbs.2024.109221","url":null,"abstract":"<div><p>We consider a hybrid model of an annual species with the timing of a stage transition governed by density dependent phenology. We show that the model can produce a strong Allee effect as well as overcompensation. The density dependent probability distribution that describes how population emergence is spread over time plays an important role in determining population dynamics. Our extensive numerical simulations with a density dependent gamma distribution indicate very rich population dynamics, from stable/unstable equilibria, limit cycles, to chaos.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109221"},"PeriodicalIF":4.3,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141156003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-24DOI: 10.1016/j.mbs.2024.109218
Kang-Ling Liao, Adam J. Wieler, Pedro M. Lopez Gascon
In cancer treatment, radiation therapy (RT) induces direct tumor cell death due to DNA damage, but it also enhances the deaths of radiosensitive immune cells and is followed by local relapse and up-regulation of immune checkpoint ligand PD-L1. Since the binding between PD-1 and PD-L1 curtails anti-tumor immunities, combining RT and PD-L1 inhibitor, anti-PD-L1, is a potential method to improve the treatment efficacy by RT. Some experiments support this hypothesis by showing that the combination of ionizing irradiation (IR) and anti-PD-L1 improves tumor reduction comparing to the monotherapy of IR or anti-PD-L1. In this work, we create a simplified ODE model to study the order of tumor growths under treatments of IR and anti-PD-L1. Our synergy analysis indicates that both IR and anti-PD-L1 improve the tumor reduction of each other, when IR and anti-PD-L1 are given simultaneously. When giving IR and anti-PD-L1 separately, a high dosage of IR should be given first to efficiently reduce tumor load and then followed by anti-PD-L1 with strong efficacy to maintain the tumor reduction and slow down the relapse. Increasing the duration of anti-PD-L1 improves the tumor reduction, but it cannot prolong the duration that tumor relapses to the level of the control case. Under some simplification, we also prove that the model has an unstable tumor free equilibrium and a locally asymptotically stable tumor persistent equilibrium. Our bifurcation diagram reveals a transition from tumor elimination to tumor persistence, as the tumor growth rate increases. In the tumor persistent case, both anti-PD-L1 and IR can reduce tumor amount in the long term.
在癌症治疗中,放射治疗(RT)可诱导肿瘤细胞因DNA损伤而直接死亡,但同时也会增强放射敏感免疫细胞的死亡,并随之出现局部复发和免疫检查点配体PD-L1的上调。由于PD-1和PD-L1之间的结合会抑制抗肿瘤免疫,因此将RT和PD-L1抑制剂(抗PD-L1)联合使用是提高RT治疗效果的一种潜在方法。一些实验表明,与单用电离辐射(IR)或抗-PD-L1疗法相比,联合使用电离辐射(IR)和抗-PD-L1疗法可提高肿瘤缩小率,从而支持了这一假设。在这项工作中,我们创建了一个简化的 ODE 模型来研究 IR 和抗-PD-L1 治疗下肿瘤生长的顺序。我们的协同作用分析表明,当同时给予IR和抗-PD-L1时,IR和抗-PD-L1都能改善彼此的肿瘤缩小效果。在分别给予IR和抗-PD-L1时,应先给予大剂量的IR,以有效减少肿瘤负荷,然后再给予疗效强的抗-PD-L1,以维持肿瘤缩小和延缓复发。延长抗-PD-L1 的疗程可以提高肿瘤缩小的效果,但不能将肿瘤复发的时间延长到对照组的水平。在一些简化条件下,我们还证明了该模型有一个不稳定的无肿瘤平衡和一个局部渐近稳定的肿瘤持续平衡。我们的分岔图显示,随着肿瘤生长率的增加,肿瘤会从消除过渡到持续存在。在肿瘤持续存在的情况下,抗 PD-L1 和 IR 都能长期减少肿瘤数量。
{"title":"Mathematical modeling and analysis of cancer treatment with radiation and anti-PD-L1","authors":"Kang-Ling Liao, Adam J. Wieler, Pedro M. Lopez Gascon","doi":"10.1016/j.mbs.2024.109218","DOIUrl":"10.1016/j.mbs.2024.109218","url":null,"abstract":"<div><p>In cancer treatment, radiation therapy (RT) induces direct tumor cell death due to DNA damage, but it also enhances the deaths of radiosensitive immune cells and is followed by local relapse and up-regulation of immune checkpoint ligand PD-L1. Since the binding between PD-1 and PD-L1 curtails anti-tumor immunities, combining RT and PD-L1 inhibitor, anti-PD-L1, is a potential method to improve the treatment efficacy by RT. Some experiments support this hypothesis by showing that the combination of ionizing irradiation (IR) and anti-PD-L1 improves tumor reduction comparing to the monotherapy of IR or anti-PD-L1. In this work, we create a simplified ODE model to study the order of tumor growths under treatments of IR and anti-PD-L1. Our synergy analysis indicates that both IR and anti-PD-L1 improve the tumor reduction of each other, when IR and anti-PD-L1 are given simultaneously. When giving IR and anti-PD-L1 separately, a high dosage of IR should be given first to efficiently reduce tumor load and then followed by anti-PD-L1 with strong efficacy to maintain the tumor reduction and slow down the relapse. Increasing the duration of anti-PD-L1 improves the tumor reduction, but it cannot prolong the duration that tumor relapses to the level of the control case. Under some simplification, we also prove that the model has an unstable tumor free equilibrium and a locally asymptotically stable tumor persistent equilibrium. Our bifurcation diagram reveals a transition from tumor elimination to tumor persistence, as the tumor growth rate increases. In the tumor persistent case, both anti-PD-L1 and IR can reduce tumor amount in the long term.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109218"},"PeriodicalIF":4.3,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141133264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-24DOI: 10.1016/j.mbs.2024.109220
Xiaoyue Yuan , Wenjun Liu , Guangying Lv , Ali Moussaoui , Pierre Auger
Ecological balance and stable economic development are crucial for the fishery. This study proposes a predator–prey system for marine communities, where the growth of predators follows the Allee effect and takes into account the rapid fluctuations in resource prices caused by supply and demand. The system predicts the existence of catastrophic equilibrium, which may lead to the extinction of prey, consequently leading to the extinction of predators, but fishing efforts remain high. Marine protected areas are established near fishing areas to avoid such situations. Fish migrate rapidly between these two areas and are only harvested in the nonprotected areas. A three-dimensional simplified model is derived by applying variable aggregation to describe the variation of global variables on a slow time scale. To seek conditions to avoid species extinction and maintain sustainable fishing activities, the existence of positive equilibrium points and their local stability are explored based on the simplified model. Moreover, the long-term impact of establishing marine protected areas and levying taxes based on unit catch on fishery dynamics is studied, and the optimal tax policy is obtained by applying Pontryagin’s maximum principle. The theoretical analysis and numerical examples of this study demonstrate the comprehensive effectiveness of increasing the proportion of marine protected areas and controlling taxes on the sustainable development of fishery.
{"title":"Sustainable management of predatory fish affected by an Allee effect through marine protected areas and taxation","authors":"Xiaoyue Yuan , Wenjun Liu , Guangying Lv , Ali Moussaoui , Pierre Auger","doi":"10.1016/j.mbs.2024.109220","DOIUrl":"10.1016/j.mbs.2024.109220","url":null,"abstract":"<div><p>Ecological balance and stable economic development are crucial for the fishery. This study proposes a predator–prey system for marine communities, where the growth of predators follows the Allee effect and takes into account the rapid fluctuations in resource prices caused by supply and demand. The system predicts the existence of catastrophic equilibrium, which may lead to the extinction of prey, consequently leading to the extinction of predators, but fishing efforts remain high. Marine protected areas are established near fishing areas to avoid such situations. Fish migrate rapidly between these two areas and are only harvested in the nonprotected areas. A three-dimensional simplified model is derived by applying variable aggregation to describe the variation of global variables on a slow time scale. To seek conditions to avoid species extinction and maintain sustainable fishing activities, the existence of positive equilibrium points and their local stability are explored based on the simplified model. Moreover, the long-term impact of establishing marine protected areas and levying taxes based on unit catch on fishery dynamics is studied, and the optimal tax policy is obtained by applying Pontryagin’s maximum principle. The theoretical analysis and numerical examples of this study demonstrate the comprehensive effectiveness of increasing the proportion of marine protected areas and controlling taxes on the sustainable development of fishery.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"373 ","pages":"Article 109220"},"PeriodicalIF":4.3,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141142880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-23DOI: 10.1016/j.mbs.2024.109219
Brian D. Sleeman , Iain W. Stewart
This paper develops a theory for anaphase in cells. After a brief description of microtubules, the mitotic spindle and the centrosome, a mathematical model for anaphase is introduced and developed in the context of the cell cytoplasm and liquid crystalline structures. Prophase, prometaphase and metaphase are then briefly described in order to focus on anaphase, which is the main study of this paper. The entities involved are modelled in terms of liquid crystal defects and microtubules are represented as defect flux lines. The mathematical techniques employed make extensive use of energy considerations based on the work that was developed by Dafermos (1970) from the classical Frank–Oseen nematic liquid crystal energy (Frank, 1958; Oseen, 1933). With regard to liquid crystal theory we introduce the concept of regions of influence for defects which it is believed have important implications beyond the subject of this paper. The results of this paper align with observed biochemical phenomena and are explored in application to HeLa cells and Caenorhabditis elegans. This unified approach offers the possibility of gaining insight into various consequences of mitotic abnormalities which may result in Down syndrome, Hodgkin lymphoma, breast, prostate and various other types of cancer.
本文提出了细胞无丝分裂期的理论。在简要介绍了微管、有丝分裂纺锤体和中心体之后,介绍了无丝分裂期的数学模型,并结合细胞胞质和液晶结构对该模型进行了阐释。然后简要介绍了前期、中期和后期,以便重点讨论无丝分裂期,这也是本文的主要研究内容。所涉及的实体以液晶缺陷建模,微管则以缺陷通量线表示。所采用的数学技术广泛使用了能量考虑,其基础是 Dafermos(1970 年)从经典的 Frank-Oseen 向列液晶能量(Frank,1958 年;Oseen,1933 年)发展而来的工作。关于液晶理论,我们引入了缺陷影响区域的概念,相信这一概念的重要意义超出了本文的主题。本文的结果与观察到的生化现象一致,并在 HeLa 细胞和秀丽隐杆线虫的应用中进行了探讨。这种统一的方法为深入了解有丝分裂异常的各种后果提供了可能,这些异常可能导致唐氏综合症、霍奇金淋巴瘤、乳腺癌、前列腺癌和其他各种癌症。
{"title":"A theoretical model of anaphase","authors":"Brian D. Sleeman , Iain W. Stewart","doi":"10.1016/j.mbs.2024.109219","DOIUrl":"10.1016/j.mbs.2024.109219","url":null,"abstract":"<div><p>This paper develops a theory for anaphase in cells. After a brief description of microtubules, the mitotic spindle and the centrosome, a mathematical model for anaphase is introduced and developed in the context of the cell cytoplasm and liquid crystalline structures. Prophase, prometaphase and metaphase are then briefly described in order to focus on anaphase, which is the main study of this paper. The entities involved are modelled in terms of liquid crystal defects and microtubules are represented as defect flux lines. The mathematical techniques employed make extensive use of energy considerations based on the work that was developed by Dafermos (1970) from the classical Frank–Oseen nematic liquid crystal energy (Frank, 1958; Oseen, 1933). With regard to liquid crystal theory we introduce the concept of <em>regions of influence</em> for defects which it is believed have important implications beyond the subject of this paper. The results of this paper align with observed biochemical phenomena and are explored in application to HeLa cells and Caenorhabditis elegans. This unified approach offers the possibility of gaining insight into various consequences of mitotic abnormalities which may result in Down syndrome, Hodgkin lymphoma, breast, prostate and various other types of cancer.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":"374 ","pages":"Article 109219"},"PeriodicalIF":4.3,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0025556424000798/pdfft?md5=e431286472ea8976254b6a5cf772312d&pid=1-s2.0-S0025556424000798-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141141314","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}