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Social vs. individual age-dependent costs of imperfect vaccination 不完善疫苗接种的社会成本与个人年龄成本。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-15 DOI: 10.1016/j.mbs.2024.109259
Fabio A.C.C. Chalub, Paulo Doutor, Paula Patrício, Maria do Céu Soares

In diseases with long-term immunity, vaccination is known to increase the average age at infection as a result of the decrease in the pathogen circulation. This implies that a vaccination campaign can have negative effects when a disease is more costly (financial or health-related costs) for higher ages. This work considers an age-structured population transmission model with imperfect vaccination. We aim to compare the social and individual costs of vaccination, assuming that disease costs are age-dependent, while the disease’s dynamic is age-independent. A model for pathogen deterministic dynamics in a population consisting of juveniles and adults, assumed to be rational agents, is introduced. The parameter region for which vaccination has a positive social impact is fully characterized and the Nash equilibrium of the vaccination game is obtained. Finally, collective strategies designed to promote voluntary vaccination, without compromising social welfare, are discussed.

众所周知,在具有长期免疫力的疾病中,由于病原体循环的减少,接种疫苗会提高平均感染年龄。这就意味着,当一种疾病对较高年龄段的人来说成本更高(经济成本或与健康相关的成本)时,疫苗接种活动就会产生负面影响。本研究考虑的是不完全接种疫苗的年龄结构人口传播模型。我们旨在比较疫苗接种的社会成本和个人成本,假设疾病成本与年龄有关,而疾病的动态变化与年龄无关。我们引入了一个病原体确定性动态耦合模型,该模型由假定为理性主体的青少年和成年人组成。疫苗接种对社会产生积极影响的参数区域得到了充分表征,疫苗接种博弈的纳什均衡也被求得。最后,讨论了旨在促进自愿接种疫苗而又不损害社会福利的集体策略。
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引用次数: 0
Infection thresholds for two interacting pathogens in a wild animal population 野生动物种群中两种相互影响的病原体的感染阈值。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-14 DOI: 10.1016/j.mbs.2024.109258
M.G. Roberts

We present a model for the dynamics of two interacting pathogen variants in a wild animal host population. Using the next-generation matrix approach we define the invasion threshold for one pathogen variant when the other is already established and at steady state. We then provide explicit criteria for the special cases where: i) the two pathogen variants exclude each other; ii) one variant excludes the other; iii) the population dynamics of hosts infected with both variants are independent of the order of infection; iv) there is no interaction between the variants; and v) one variant enhances transmission of the other.

我们提出了一个野生动物宿主种群中两种相互作用的病原体变体的动态模型。利用下一代矩阵方法,我们定义了一种病原体变体在另一种病原体变体已经确定并处于稳定状态时的入侵阈值。然后,我们为以下特殊情况提供了明确的标准:i) 两种病原体变体相互排斥;ii) 一种变体排斥另一种变体;iii) 感染两种变体的宿主的种群动态与感染顺序无关;iv) 变体之间没有相互作用;v) 一种变体增强了另一种变体的传播。
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引用次数: 0
Mathematical analysis of simple behavioral epidemic models 简单行为流行病模型的数学分析。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-14 DOI: 10.1016/j.mbs.2024.109250
Leah LeJeune , Navid Ghaffarzadegan , Lauren M. Childs , Omar Saucedo

COVID-19 highlighted the importance of considering human behavior change when modeling disease dynamics. This led to developing various models that incorporate human behavior. Our objective is to contribute to an in-depth, mathematical examination of such models. Here, we consider a simple deterministic compartmental model with endogenous incorporation of human behavior (i.e., behavioral feedback) through transmission in a classic Susceptible–Exposed–Infectious–Recovered (SEIR) structure. Despite its simplicity, the SEIR structure with behavior (SEIRb) was shown to perform well in forecasting, especially compared to more complicated models. We contrast this model with an SEIR model that excludes endogenous incorporation of behavior. Both models assume permanent immunity to COVID-19, so we also consider a modification of the models which include waning immunity (SEIRS and SEIRSb). We perform equilibria, sensitivity, and identifiability analyses on all models and examine the fidelity of the models to replicate COVID-19 data across the United States. Endogenous incorporation of behavior significantly improves a model’s ability to produce realistic outbreaks. While the two endogenous models are similar with respect to identifiability and sensitivity, the SEIRSb model, with the more accurate assumption of the waning immunity, strengthens the initial SEIRb model by allowing for the existence of an endemic equilibrium, a realistic feature of COVID-19 dynamics. When fitting the model to data, we further consider the addition of simple seasonality affecting disease transmission to highlight the explanatory power of the models.

COVID-19 强调了在建立疾病动态模型时考虑人类行为变化的重要性。因此,我们开发了各种包含人类行为的模型。我们的目标是对此类模型进行深入的数学研究。在这里,我们考虑了一个简单的确定性分区模型,该模型通过经典的 "易感-暴露-感染-恢复"(SEIR)结构中的传播,内生地纳入了人类行为(即行为反馈)。带行为的 SEIR 结构(SEIRb)尽管简单,但在预测方面表现良好,尤其是与更复杂的模型相比。我们将该模型与不包含内生行为的 SEIR 模型进行对比。这两个模型都假定 COVID-19 具有永久免疫力,因此我们还考虑对包含减弱免疫力的模型(SEIRS 和 SEIRSb)进行修改。我们对所有模型进行了平衡、敏感性和可识别性分析,并检验了这些模型在全美范围内复制 COVID-19 数据的保真度。内生行为的纳入大大提高了模型产生真实疫情的能力。虽然两种内生模型在可识别性和敏感性方面相似,但 SEIRSb 模型对免疫力减弱的假设更为准确,通过允许存在流行平衡(COVID-19 动态的一个现实特征)来加强最初的 SEIRb 模型。在将模型与数据拟合时,我们进一步考虑增加影响疾病传播的简单季节性,以突出模型的解释能力。
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引用次数: 0
Efficient and scalable prediction of stochastic reaction–diffusion processes using graph neural networks 利用图神经网络高效、可扩展地预测随机反应-扩散过程。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-08 DOI: 10.1016/j.mbs.2024.109248

The dynamics of locally interacting particles that are distributed in space give rise to a multitude of complex behaviours. However the simulation of reaction–diffusion processes which model such systems is highly computationally expensive, the cost increasing rapidly with the size of space. Here, we devise a graph neural network based approach that uses cheap Monte Carlo simulations of reaction–diffusion processes in a small space to cast predictions of the dynamics of the same processes in a much larger and complex space, including spaces modelled by networks with heterogeneous topology. By applying the method to two biological examples, we show that it leads to accurate results in a small fraction of the computation time of standard stochastic simulation methods. The scalability and accuracy of the method suggest it is a promising approach for studying reaction–diffusion processes in complex spatial domains such as those modelling biochemical reactions, population evolution and epidemic spreading.

分布在空间中的局部相互作用粒子的动力学产生了许多复杂的行为。然而,模拟此类系统的反应扩散过程的计算成本非常高昂,随着空间大小的增加,成本也在迅速增加。在这里,我们设计了一种基于图神经网络的方法,利用在较小空间内对反应扩散过程进行的廉价蒙特卡洛模拟,来预测相同过程在更大和更复杂空间内的动态,包括由具有异质拓扑结构的网络建模的空间。通过将该方法应用于两个生物实例,我们发现它只需要标准随机模拟方法的一小部分计算时间,就能得出准确的结果。该方法的可扩展性和准确性表明,它是研究复杂空间领域(如生化反应建模、种群进化和流行病传播)中反应扩散过程的一种有前途的方法。
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引用次数: 0
Analyzing the use of non-pharmaceutical personal protective measures through self-interest and social optimum for the control of an emerging disease 分析通过自我利益和社会最优化使用非药物个人防护措施来控制一种新出现的疾病。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-04 DOI: 10.1016/j.mbs.2024.109246
Aniruddha Deka , Ceyhun Eksin , Martial L. Ndeffo-Mbah

Non-pharmaceutical personal protective (NPP) measures such as face masks use, and hand and respiratory hygiene can be effective measures for mitigating the spread of aerosol/airborne diseases, such as COVID-19, in the absence of vaccination or treatment. However, the usage of such measures is constrained by their inherent perceived cost and effectiveness for reducing transmission risk. To understand the complex interaction of disease dynamics and individuals decision whether to adopt NPP or not, we incorporate evolutionary game theory into an epidemic model such as COVID-19. To compare how self-interested NPP use differs from social optimum, we also investigated optional control from a central planner’s perspective. We use Pontryagin’s maximum principle to identify the population-level NPP uptake that minimizes disease incidence by incurring the minimum costs. The evolutionary behavior model shows that NPP uptake increases at lower perceived costs of NPP, higher transmission risk, shorter duration of NPP use, higher effectiveness of NPP, and shorter duration of disease-induced immunity. Though social optimum NPP usage is generally more effective in reducing disease incidence than self-interested usage, our analysis identifies conditions under which both strategies get closer. Our model provides new insights for public health in mitigating a disease outbreak through NPP.

在没有疫苗接种或治疗的情况下,使用口罩、保持手部和呼吸道卫生等非药物个人防护(NPP)措施可以有效减少 COVID-19 等气溶胶/空气传播疾病的传播。然而,这些措施的使用受到其固有的成本和降低传播风险的有效性的限制。为了理解疾病动态与个人是否采用国家预防计划的决定之间复杂的相互作用,我们将进化博弈论纳入了 COVID-19 等流行病模型。为了比较自利使用 NPP 与社会最优的不同之处,我们还从中央规划者的角度研究了可选控制。我们利用庞特里亚金的最大原则来确定群体层面的国家杀虫剂摄入量,从而通过最小的成本将疾病发病率降至最低。进化行为模型表明,在国家预防计划的感知成本较低、传播风险较高、国家预防计划使用时间较短、国家预防计划效果较好以及疾病诱导免疫持续时间较短的情况下,国家预防计划的使用率会增加。虽然在降低疾病发病率方面,社会最优使用 NPP 通常比自利使用 NPP 更有效,但我们的分析确定了在哪些条件下这两种策略更接近。我们的模型为公共卫生通过国家杀虫剂方案缓解疾病爆发提供了新的见解。
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引用次数: 0
A soluble model for synchronized rhythmic activity in ant colonies 蚁群同步节律活动的可溶性模型
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-03 DOI: 10.1016/j.mbs.2024.109245
Pedro M.M. da Silveira, José F. Fontanari

Synchronization is one of the most striking instances of collective behavior, occurring in many natural phenomena. For example, in some ant species, ants are inactive within the nest most of the time, but their bursts of activity are highly synchronized and involve the entire nest population. Here we revisit a simulation model that generates this synchronized rhythmic activity through autocatalytic behavior, i.e., active ants can activate inactive ants, followed by a period of rest. We derive a set of delay differential equations that provide an accurate description of the simulations for large ant colonies. Analysis of the fixed-point solutions, complemented by numerical integration of the equations, indicates the existence of stable limit-cycle solutions when the rest period is greater than a threshold and the event of spontaneous activation of inactive ants is very unlikely, so that most of the arousal of ants is done by active ants. Furthermore, we argue that the persistent oscillations observed in the simulations for colonies of finite size are due to resonant amplification of demographic noise.

同步是集体行为中最显著的例子之一,出现在许多自然现象中。例如,在某些蚂蚁物种中,蚂蚁在巢穴内大部分时间是不活动的,但它们的突发性活动是高度同步的,并涉及整个巢穴种群。在这里,我们重新探讨了一种通过自催化行为产生这种同步节律活动的模拟模型,即活跃的蚂蚁可以激活不活跃的蚂蚁,然后休息一段时间。我们推导出一组延迟微分方程,可以准确描述大型蚂蚁群的模拟情况。对定点解的分析以及对方程的数值积分表明,当休息期大于临界值时,存在稳定的极限循环解,而非活动蚂蚁自发激活的可能性很小,因此蚂蚁的大部分唤醒是由活动蚂蚁完成的。此外,我们还认为,在有限规模的蚁群中观察到的持续振荡是由于人口噪声的共振放大造成的。
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引用次数: 0
Modeling and analysis of a human papilloma virus transmission model with impact of media 受媒体影响的人类乳头瘤病毒传播模型的建模与分析。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-03 DOI: 10.1016/j.mbs.2024.109247

The human papillomavirus (HPV) is threatening human health as it spreads globally in varying degrees. On the other hand, the speed and scope of information transmission continues to increase, as well as the significant increase in the number of HPV-related news reports, it has never been more important to explore the role of media news coverage in the spread and control of the virus. Using a decreasing factor that captures the impact of media on the actions of people, this paper develops a model that characterizes the dynamics of HPV transmission with media impact, vaccination and recovery. We obtain global stability of equilibrium points employing geometric method, and further yield effective methods to contain the HPV pandemic by sensitivity analysis. With the center manifold theory, we show that there is a forward bifurcation when R0=1. Our study suggested that, besides controlling contact between infected and susceptible populations and improving effective vaccine coverage, a better intervention would be to strengthen media coverage. In addition, we demonstrated that contact rate and the effect of media coverage result in multiple epidemics of infection when certain conditions are met, implying that interventions need to be tailored to specific situations.

人类乳头瘤病毒(HPV)在全球范围内不同程度的传播,威胁着人类的健康。另一方面,随着信息传播速度和范围的不断提高,以及与 HPV 相关的新闻报道数量的大幅增加,探讨媒体新闻报道在病毒传播和控制中的作用变得前所未有的重要。本文利用一个能捕捉媒体对人们行为影响的递减因子,建立了一个模型,描述了 HPV 传播与媒体影响、疫苗接种和恢复的动态关系。我们利用几何方法获得了平衡点的全局稳定性,并通过敏感性分析进一步得出了遏制人乳头瘤病毒大流行的有效方法。利用中心流形理论,我们证明了当 R0=1 时存在正向分叉。我们的研究表明,除了控制感染人群和易感人群之间的接触、提高疫苗的有效覆盖率外,更好的干预措施是加强媒体报道。此外,我们还证明了在满足特定条件时,接触率和媒体覆盖率的影响会导致多重感染流行,这意味着需要根据具体情况采取相应的干预措施。
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引用次数: 0
Spatial heterogeneity analysis for the transmission of syphilis disease in China via a data-validated reaction–diffusion model 通过数据验证的反应-扩散模型分析中国梅毒疾病传播的空间异质性。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-07-02 DOI: 10.1016/j.mbs.2024.109243
Peng Wu , Xiunan Wang , Hao Wang

Based on the distinctive spatial diffusion characteristics observed in syphilis transmission patterns, this paper introduces a novel reaction–diffusion model for syphilis disease dynamics, incorporating general incidence functions within a heterogeneous environment. We derive the basic reproduction number essential for threshold dynamics and investigate the uniform persistence of the model. We validate the model and estimate its parameters by employing the multi-objective Markov Chain Monte Carlo (MCMC) method, using real syphilis data from the years 2004 to 2018 in China. Furthermore, we explore the impact of spatial heterogeneity and intervention measures on syphilis transmission. Our findings reveal several key insights: (1) In addition to the original high-incidence areas of syphilis, Xinjiang, Guizhou, Hunan and Northeast China have also emerged as high-incidence regions for syphilis in China. (2) The latent syphilis cases represent the highest proportion of newly reported cases, highlighting the critical importance of considering their role in transmission dynamics to avoid underestimation of syphilis outbreaks. (3) Neglecting spatial heterogeneity results in an underestimation of disease prevalence and the number of syphilis-infected individuals, undermining effective disease prevention and control strategies. (4) The initial conditions have minimal impact on the long-term spatial distribution of syphilis-infected individuals in scenarios of varying diffusion rates. This study underscores the significance of spatial dynamics and intervention measures in assessing and managing syphilis transmission, which offers insights for public health policymakers.

基于在梅毒传播模式中观察到的独特空间扩散特征,本文引入了一种新的梅毒疾病动力学反应-扩散模型,将一般发病率函数纳入异质环境中。我们推导了阈值动力学所必需的基本繁殖数,并研究了模型的均匀持久性。我们利用中国 2004 年至 2018 年的真实梅毒数据,采用多目标马尔可夫链蒙特卡洛(MCMC)方法验证了该模型并估计了其参数。此外,我们还探讨了空间异质性和干预措施对梅毒传播的影响。我们的研究结果揭示了以下几个重要观点:(1)除原有的梅毒高发区外,新疆、贵州、湖南和东北地区也已成为中国梅毒的高发区。(2)潜伏梅毒病例占新报告病例的比例最高,这说明考虑潜伏梅毒病例在传播动态中的作用对避免低估梅毒疫情至关重要。(3)忽视空间异质性会导致低估疾病流行率和梅毒感染人数,影响有效的疾病预防和控制策略。(4)在扩散率不同的情况下,初始条件对梅毒感染者长期空间分布的影响微乎其微。这项研究强调了空间动态和干预措施在评估和管理梅毒传播中的重要性,为公共卫生决策者提供了启示。
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引用次数: 0
Multiple endemic equilibria in an environmentally-transmitted disease with three disease stages 具有三个发病阶段的环境传播疾病的多重流行平衡。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-06-29 DOI: 10.1016/j.mbs.2024.109244

We construct, analyze and interpret a mathematical model for an environmental transmitted disease characterized for the existence of three disease stages: acute, severe and asymptomatic. Besides, we consider that severe and asymptomatic cases may present relapse between them. Transmission dynamics driven by the contact rates only occurs when a parameter R>1, as normally occur in directly-transmitted or vector-transmitted diseases, but it will not adequately correspond to a basic reproductive number as it depends on environmental parameters. In this case, the forward transcritical bifurcation that exists for R<1, becomes a backward bifurcation, producing multiple steady-states, a hysteresis effect and dependence on initial conditions. A threshold parameter for an epidemic outbreak, independent of R is only the ratio of the external contamination inflow shedding rate to the environmental clearance rate. R describes the strength of the transmission to infectious classes other than the I-(acute) type infections. The epidemic outbreak conditions and the structure of R appearing in this model are both responsible for the existence of endemic states.

我们构建、分析和解释了一种环境传播疾病的数学模型,该模型的特点是存在三个疾病阶段:急性、严重和无症状。此外,我们还考虑到重症病例和无症状病例之间可能会复发。只有当参数 R∗>1 时,才会出现由接触率驱动的传播动态,这通常发生在直接传播或病媒传播的疾病中,但由于它取决于环境参数,因此与基本繁殖数量并不完全对应。在这种情况下,R∗∗ 存在的前向临界分岔只是外部污染流入脱落率与环境清除率之比。R∗ 描述了对 I-(急性)型感染以外的感染类别的传播强度。该模型中出现的流行病爆发条件和 R∗ 的结构都是流行病状态存在的原因。
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引用次数: 0
The importance of incorporating ventricular–ventricular interaction (VVI) in the study of pulmonary hypertension 将心室-心室相互作用(VVI)纳入肺动脉高压研究的重要性。
IF 1.9 4区 数学 Q2 BIOLOGY Pub Date : 2024-06-27 DOI: 10.1016/j.mbs.2024.109242

Ventricular ventricular interaction (VVI) affects blood volume and pressure in the right and left ventricles of the heart due to the location and balance of forces on the septal wall separating the ventricles. In healthy patients, the pressure of the left ventricle is considerably higher than the right, resulting in a septal wall that bows into the right ventricle. However, in patients with pulmonary hypertension, the pressure in the right ventricle increases significantly to a point where the pressure is similar to or surpasses that of the left ventricle during portions of the cardiac cycle. For these patients, the septal wall deviates towards the left ventricle, impacting its function. It is possible to study this effect using mathematical modeling, but existing models are nonlinear, leading to a system of algebraic differential equations that can be challenging to solve in patient-specific optimizations of clinical data. This study demonstrates that a simplified linearized model is sufficient to account for the effect of VVI and that, as expected, the impact is significantly more pronounced in patients with pulmonary hypertension.

心室与心室间的相互作用(VVI)会影响心脏左右心室的血容量和压力,其原因在于分隔心室的室间隔壁的位置和受力平衡。在健康患者中,左心室的压力大大高于右心室,导致室间隔壁向右心室弯曲。然而,在肺动脉高压患者中,右心室的压力会显著增加,以至于在部分心动周期中与左心室的压力相近或超过左心室的压力。对于这些患者,室间隔壁会向左心室偏移,从而影响左心室的功能。利用数学建模研究这种影响是可能的,但现有的模型都是非线性的,会产生一个代数微分方程系统,在针对患者的临床数据优化过程中解决这个问题具有挑战性。本研究表明,简化的线性化模型足以解释 VVI 的影响,而且正如预期的那样,VVI 对肺动脉高压患者的影响更为明显。
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引用次数: 0
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