Pub Date : 2024-08-17DOI: 10.1016/j.mbs.2024.109282
M. Adrian Acuña-Zegarra, Mayra R. Tocto-Erazo, Claudio C. García-Mendoza, Daniel Olmos-Liceaga
The invasion of hematophagous arthropod species in human settlements represents a threat, not only to the economy but also to the health system in general. Recent examples of this phenomenon were seen in Paris and Mexico City, evidencing the importance of understanding these dynamics. In this work, we present a reaction–diffusion model to describe the invasion dynamics of hematophagous arthropod species. The proposed model considers a denso-dependent growth rate and parameters related to the control of the invasive species. Our results illustrate the existence of two invasion levels (presence and infestation) within a region, depending on control parameter values. We also prove analytically the existence of the presence and infestation waves and show different theoretical types of invasion waves that result from varying control parameters. In addition, we present a condition threshold that determines whether or not an infestation occurs. Finally, we illustrate some results when considering the case of bedbugs and brown dog ticks as invasion species.
{"title":"Presence and infestation waves of hematophagous arthropod species","authors":"M. Adrian Acuña-Zegarra, Mayra R. Tocto-Erazo, Claudio C. García-Mendoza, Daniel Olmos-Liceaga","doi":"10.1016/j.mbs.2024.109282","DOIUrl":"10.1016/j.mbs.2024.109282","url":null,"abstract":"<div><p>The invasion of hematophagous arthropod species in human settlements represents a threat, not only to the economy but also to the health system in general. Recent examples of this phenomenon were seen in Paris and Mexico City, evidencing the importance of understanding these dynamics. In this work, we present a reaction–diffusion model to describe the invasion dynamics of hematophagous arthropod species. The proposed model considers a denso-dependent growth rate and parameters related to the control of the invasive species. Our results illustrate the existence of two invasion levels (presence and infestation) within a region, depending on control parameter values. We also prove analytically the existence of the presence and infestation waves and show different theoretical types of invasion waves that result from varying control parameters. In addition, we present a condition threshold that determines whether or not an infestation occurs. Finally, we illustrate some results when considering the case of bedbugs and brown dog ticks as invasion species.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142006207","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-13DOI: 10.1016/j.mbs.2024.109279
Sabrina H. Streipert , Gail S.K. Wolkowicz
We introduce a class of discrete single species models with distributed delay in the reproductive process and a cohort dependent survival function that accounts for survival pressure during that delay period. These delay recurrences track the mature population for species in which individuals reach maturity after at least and at most breeding cycles. Under realistic model assumptions, we prove the existence of a critical delay threshold, . For given delay kernel length , if each individual takes at least time units to reach maturity, then the population is predicted to go extinct. We show that the positive equilibrium is decreasing in both and . In the case of a constant reproductive rate, we provide an equation to determine for fixed , and similarly, provide a lower bound on the kernel length, for fixed such that the population goes extinct if . We compare these critical thresholds for different maturation distributions and show that if all else is the same, to avoid extinction it is best if all individuals in the population have the shortest delay possible. We apply the model derivation to a Beverton–Holt model and discuss its global dynamics. For this model with kernels that share the same mean delay, we show that populations with the largest variance in the time required to reach maturity have higher population levels and lower chances of extinction.
{"title":"Derivation and dynamics of discrete population models with distributed delay in reproduction","authors":"Sabrina H. Streipert , Gail S.K. Wolkowicz","doi":"10.1016/j.mbs.2024.109279","DOIUrl":"10.1016/j.mbs.2024.109279","url":null,"abstract":"<div><p>We introduce a class of discrete single species models with distributed delay in the reproductive process and a cohort dependent survival function that accounts for survival pressure during that delay period. These delay recurrences track the mature population for species in which individuals reach maturity after at least <span><math><mi>τ</mi></math></span> and at most <span><math><mrow><mi>τ</mi><mo>+</mo><msub><mrow><mi>τ</mi></mrow><mrow><mi>M</mi></mrow></msub></mrow></math></span> breeding cycles. Under realistic model assumptions, we prove the existence of a critical delay threshold, <span><math><msub><mrow><mover><mrow><mi>τ</mi></mrow><mrow><mo>˜</mo></mrow></mover></mrow><mrow><mi>c</mi></mrow></msub></math></span>. For given delay kernel length <span><math><msub><mrow><mi>τ</mi></mrow><mrow><mi>M</mi></mrow></msub></math></span>, if each individual takes at least <span><math><msub><mrow><mover><mrow><mi>τ</mi></mrow><mrow><mo>˜</mo></mrow></mover></mrow><mrow><mi>c</mi></mrow></msub></math></span> time units to reach maturity, then the population is predicted to go extinct. We show that the positive equilibrium is decreasing in both <span><math><mi>τ</mi></math></span> and <span><math><msub><mrow><mi>τ</mi></mrow><mrow><mi>M</mi></mrow></msub></math></span>. In the case of a constant reproductive rate, we provide an equation to determine <span><math><msub><mrow><mover><mrow><mi>τ</mi></mrow><mrow><mo>˜</mo></mrow></mover></mrow><mrow><mi>c</mi></mrow></msub></math></span> for fixed <span><math><msub><mrow><mi>τ</mi></mrow><mrow><mi>M</mi></mrow></msub></math></span>, and similarly, provide a lower bound on the kernel length, <span><math><msub><mrow><mover><mrow><mi>τ</mi></mrow><mrow><mo>˜</mo></mrow></mover></mrow><mrow><mi>M</mi></mrow></msub></math></span> for fixed <span><math><mi>τ</mi></math></span> such that the population goes extinct if <span><math><mrow><msub><mrow><mi>τ</mi></mrow><mrow><mi>M</mi></mrow></msub><mo>≥</mo><msub><mrow><mover><mrow><mi>τ</mi></mrow><mrow><mo>˜</mo></mrow></mover></mrow><mrow><mi>M</mi></mrow></msub></mrow></math></span>. We compare these critical thresholds for different maturation distributions and show that if all else is the same, to avoid extinction it is best if all individuals in the population have the shortest delay possible. We apply the model derivation to a Beverton–Holt model and discuss its global dynamics. For this model with kernels that share the same mean delay, we show that populations with the largest variance in the time required to reach maturity have higher population levels and lower chances of extinction.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141989855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-08DOI: 10.1016/j.mbs.2024.109275
Sana Jahedi , Lin Wang , James A. Yorke , James Watmough
We model interactions between cancer cells and viruses during oncolytic viral therapy. One of our primary goals is to identify parameter regions that yield treatment failure or success. We show that the tumor size under therapy at a particular time is less than the size without therapy. Our analysis demonstrates two thresholds for the horizontal transmission rate: a “failure threshold” below which treatment fails, and a “success threshold” above which infection prevalence reaches 100% and the tumor shrinks to its smallest size. Moreover, we explain how changes in the virulence of the virus alter the success threshold and the minimum tumor size. Our study suggests that the optimal virulence of an oncolytic virus depends on the timescale of virus dynamics. We identify a threshold for the virulence of the virus and show how this threshold depends on the timescale of virus dynamics. Our results suggest that when the timescale of virus dynamics is fast, administering a more virulent virus leads to a greater reduction in the tumor size. Conversely, when the viral timescale is slow, higher virulence can induce oscillations with high amplitude in the tumor size. Furthermore, we introduce the concept of a “Hopf bifurcation Island” in the parameter space, an idea that has applications far beyond the results of this paper and is applicable to many mathematical models. We elucidate what a Hopf bifurcation Island is, and we prove that small Islands can imply very slowly growing oscillatory solutions.
{"title":"Finding Hopf bifurcation islands and identifying thresholds for success or failure in oncolytic viral therapy","authors":"Sana Jahedi , Lin Wang , James A. Yorke , James Watmough","doi":"10.1016/j.mbs.2024.109275","DOIUrl":"10.1016/j.mbs.2024.109275","url":null,"abstract":"<div><p>We model interactions between cancer cells and viruses during oncolytic viral therapy. One of our primary goals is to identify parameter regions that yield treatment failure or success. We show that the tumor size under therapy at a particular time is less than the size without therapy. Our analysis demonstrates two thresholds for the horizontal transmission rate: a “failure threshold” below which treatment fails, and a “success threshold” above which infection prevalence reaches 100% and the tumor shrinks to its smallest size. Moreover, we explain how changes in the virulence of the virus alter the success threshold and the minimum tumor size. Our study suggests that the optimal virulence of an oncolytic virus depends on the timescale of virus dynamics. We identify a threshold for the virulence of the virus and show how this threshold depends on the timescale of virus dynamics. Our results suggest that when the timescale of virus dynamics is fast, administering a more virulent virus leads to a greater reduction in the tumor size. Conversely, when the viral timescale is slow, higher virulence can induce oscillations with high amplitude in the tumor size. Furthermore, we introduce the concept of a “Hopf bifurcation Island” in the parameter space, an idea that has applications far beyond the results of this paper and is applicable to many mathematical models. We elucidate what a Hopf bifurcation Island is, and we prove that small Islands can imply very slowly growing oscillatory solutions.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141914967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-08DOI: 10.1016/j.mbs.2024.109266
Patrick Murphy , Misha Perepelitsa , Ilya Timofeyev , Matan Lieber-Kotz , Brandon Islas , Oleg A. Igoshin
Studies in the collective motility of organisms use a range of analytical approaches to formulate continuous kinetic models of collective dynamics from rules or equations describing agent interactions. However, the derivation of these kinetic models often relies on Boltzmann’s “molecular chaos” hypothesis, which assumes that correlations between individuals are short-lived. While this assumption is often the simplest way to derive tractable models, it is often not valid in practice due to the high levels of cooperation and self-organization present in biological systems. In this work, we illustrated this point by considering a general Boltzmann-type kinetic model for the alignment of self-propelled rods where rod reorientation occurs upon binary collisions. We examine the accuracy of the kinetic model by comparing numerical solutions of the continuous equations to an agent-based model that implements the underlying rules governing microscopic alignment. Even for the simplest case considered, our comparison demonstrates that the kinetic model fails to replicate the discrete dynamics due to the formation of rod clusters that violate statistical independence. Additionally, we show that introducing noise to limit cluster formation helps improve the agreement between the analytical model and agent simulations but does not restore the agreement completely. These results highlight the need to both develop and disseminate improved moment-closure methods for modeling biological and active matter systems.
{"title":"Breakdown of Boltzmann-type models for the alignment of self-propelled rods","authors":"Patrick Murphy , Misha Perepelitsa , Ilya Timofeyev , Matan Lieber-Kotz , Brandon Islas , Oleg A. Igoshin","doi":"10.1016/j.mbs.2024.109266","DOIUrl":"10.1016/j.mbs.2024.109266","url":null,"abstract":"<div><p>Studies in the collective motility of organisms use a range of analytical approaches to formulate continuous kinetic models of collective dynamics from rules or equations describing agent interactions. However, the derivation of these kinetic models often relies on Boltzmann’s “molecular chaos” hypothesis, which assumes that correlations between individuals are short-lived. While this assumption is often the simplest way to derive tractable models, it is often not valid in practice due to the high levels of cooperation and self-organization present in biological systems. In this work, we illustrated this point by considering a general Boltzmann-type kinetic model for the alignment of self-propelled rods where rod reorientation occurs upon binary collisions. We examine the accuracy of the kinetic model by comparing numerical solutions of the continuous equations to an agent-based model that implements the underlying rules governing microscopic alignment. Even for the simplest case considered, our comparison demonstrates that the kinetic model fails to replicate the discrete dynamics due to the formation of rod clusters that violate statistical independence. Additionally, we show that introducing noise to limit cluster formation helps improve the agreement between the analytical model and agent simulations but does not restore the agreement completely. These results highlight the need to both develop and disseminate improved moment-closure methods for modeling biological and active matter systems.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0025556424001263/pdfft?md5=d3610de789d955115816de8934e2ce02&pid=1-s2.0-S0025556424001263-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141914966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-02DOI: 10.1016/j.mbs.2024.109264
Zitao He, Chris T. Bauch
Understanding the interplay between social activities and disease dynamics is crucial for effective public health interventions. Recent studies using coupled behavior-disease models assumed homogeneous populations. However, heterogeneity in population, such as different social groups, cannot be ignored. In this study, we divided the population into social media users and non-users, and investigated the impact of homophily (the tendency for individuals to associate with others similar to themselves) and online events on disease dynamics. Our results reveal that homophily hinders the adoption of vaccinating strategies, hastening the approach to a tipping point after which the population converges to an endemic equilibrium with no vaccine uptake. Furthermore, we find that online events can significantly influence disease dynamics, with early discussions on social media platforms serving as an early warning signal of potential disease outbreaks. Our model provides insights into the mechanisms underlying these phenomena and underscores the importance of considering homophily in disease modeling and public health strategies.
{"title":"Effect of homophily on coupled behavior-disease dynamics near a tipping point","authors":"Zitao He, Chris T. Bauch","doi":"10.1016/j.mbs.2024.109264","DOIUrl":"10.1016/j.mbs.2024.109264","url":null,"abstract":"<div><p>Understanding the interplay between social activities and disease dynamics is crucial for effective public health interventions. Recent studies using coupled behavior-disease models assumed homogeneous populations. However, heterogeneity in population, such as different social groups, cannot be ignored. In this study, we divided the population into social media users and non-users, and investigated the impact of homophily (the tendency for individuals to associate with others similar to themselves) and online events on disease dynamics. Our results reveal that homophily hinders the adoption of vaccinating strategies, hastening the approach to a tipping point after which the population converges to an endemic equilibrium with no vaccine uptake. Furthermore, we find that online events can significantly influence disease dynamics, with early discussions on social media platforms serving as an early warning signal of potential disease outbreaks. Our model provides insights into the mechanisms underlying these phenomena and underscores the importance of considering homophily in disease modeling and public health strategies.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S002555642400124X/pdfft?md5=74385800e80062ca5184deb43245a2fe&pid=1-s2.0-S002555642400124X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141891445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-31DOI: 10.1016/j.mbs.2024.109263
Zadoki Tabo , Livingstone Luboobi , Philipp Kraft , Lutz Breuer , Christian Albrecht
Schistosomiasis, a freshwater-borne neglected tropical disease, disproportionately affects impoverished communities mainly in the tropical regions. Transmission involves humans and intermediate host (IH) snails. This manuscript introduces a mathematical model to probe schistosomiasis dynamics and the role of non-host snail competitors and predators as biological control agents for IH snails. The numerical analyses include investigations into steady-state conditions and reproduction numbers associated with uncontrolled scenarios, as well as scenarios involving non-host snail competitors and/or predators. Sensitivity analysis reveals that increasing snail mortality rates is a key to reducing the IH snail population and control of the transmission. Results show that specific snail competitors and/or predators with strong competition/predation abilities reduce IH snails and the subsequent infectious cercaria populations, reduce the transmission, and possibly eradicate the disease, while those with weaker abilities allow disease persistence. Hence our findings advocate for the effectiveness of snail competitors with suitable competitive pressures and/or predators with appropriate predatory abilities as nature-based solutions for combating schistosomiasis, all while preserving IH snail biodiversity. However, if these strategies are implemented at insignificant levels, IH snails can dominate, and disease persistence may pose challenges. Thus, experimental screening of potential (native) snail competitors and/or predators is crucial to assess the likely behavior of biological agents and determine the optimal biological control measures for IH snails.
血吸虫病是一种淡水传播的被忽视的热带疾病,主要影响热带地区的贫困社区。传播涉及人类和中间宿主(IH)钉螺。本手稿介绍了一种数学模型,用于探究血吸虫病的动态以及作为中间宿主钉螺生物控制剂的非宿主钉螺竞争者和捕食者的作用。数值分析包括研究与不受控情况相关的稳态条件和繁殖数量,以及涉及非宿主钉螺竞争者和/或捕食者的情况。敏感性分析表明,提高蜗牛死亡率是减少 IH 蜗牛数量和控制传播的关键。结果表明,具有较强竞争/捕食能力的特定蜗牛竞争者和/或捕食者能减少 IH 蜗牛及其感染的蛔虫数量,降低传播率,并可能根除疾病,而能力较弱的竞争者和/或捕食者则会使疾病持续存在。因此,我们的研究结果表明,具有适当竞争压力的钉螺竞争者和/或具有适当捕食能力的捕食者是防治血吸虫病的有效自然解决方案,同时还能保护IH钉螺的生物多样性。然而,如果这些策略的实施水平不高,IH钉螺可能会占据主导地位,疾病的持续存在可能会带来挑战。因此,对潜在的(本地)钉螺竞争者和/或捕食者进行实验筛选,对于评估生物制剂的可能行为和确定针对 IH 钉螺的最佳生物控制措施至关重要。
{"title":"Control of schistosomiasis by the selective competitive and predatory intervention of intermediate hosts: A mathematical modeling approach","authors":"Zadoki Tabo , Livingstone Luboobi , Philipp Kraft , Lutz Breuer , Christian Albrecht","doi":"10.1016/j.mbs.2024.109263","DOIUrl":"10.1016/j.mbs.2024.109263","url":null,"abstract":"<div><p>Schistosomiasis, a freshwater-borne neglected tropical disease, disproportionately affects impoverished communities mainly in the tropical regions. Transmission involves humans and intermediate host (IH) snails. This manuscript introduces a mathematical model to probe schistosomiasis dynamics and the role of non-host snail competitors and predators as biological control agents for IH snails. The numerical analyses include investigations into steady-state conditions and reproduction numbers associated with uncontrolled scenarios, as well as scenarios involving non-host snail competitors and/or predators. Sensitivity analysis reveals that increasing snail mortality rates is a key to reducing the IH snail population and control of the transmission. Results show that specific snail competitors and/or predators with strong competition/predation abilities reduce IH snails and the subsequent infectious cercaria populations, reduce the transmission, and possibly eradicate the disease, while those with weaker abilities allow disease persistence. Hence our findings advocate for the effectiveness of snail competitors with suitable competitive pressures and/or predators with appropriate predatory abilities as nature-based solutions for combating schistosomiasis, all while preserving IH snail biodiversity. However, if these strategies are implemented at insignificant levels, IH snails can dominate, and disease persistence may pose challenges. Thus, experimental screening of potential (native) snail competitors and/or predators is crucial to assess the likely behavior of biological agents and determine the optimal biological control measures for IH snails.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0025556424001238/pdfft?md5=06a7af3d9e784d286965fd9ae24cddf4&pid=1-s2.0-S0025556424001238-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141877034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-30DOI: 10.1016/j.mbs.2024.109265
Wasiur R. KhudaBukhsh , Grzegorz A. Rempała
In epidemiology, realistic disease dynamics often require Susceptible-Exposed-Infected-Recovered (SEIR)-like models because they account for incubation periods before individuals become infectious. However, for the sake of analytical tractability, simpler Susceptible-Infected-Recovered (SIR) models are commonly used, despite their lack of biological realism. Bridging these models is crucial for accurately estimating parameters and fitting models to observed data, particularly in population-level studies of infectious diseases.
This paper investigates stochastic versions of the SEIR and SIR frameworks and demonstrates that the SEIR model can be effectively approximated by a SIR model with time-dependent infection and recovery rates. The validity of this approximation is supported by the derivation of a large-population Functional Law of Large Numbers (FLLN) limit and a finite-population concentration inequality.
To apply this approximation in practice, the paper introduces a parameter inference methodology based on the Dynamic Survival Analysis (DSA) survival analysis framework. This method enables the fitting of the SIR model to data simulated from the more complex SEIR dynamics, as illustrated through simulated experiments.
在流行病学中,现实的疾病动力学通常需要类似于 "易感-暴露-感染-恢复"(SEIR)的模型,因为这些模型考虑了个体感染前的潜伏期。然而,为了分析的可操作性,人们通常使用更简单的易感-感染-恢复(SIR)模型,尽管这些模型缺乏生物真实性。衔接这些模型对于准确估计参数和将模型与观测数据拟合至关重要,尤其是在传染病的群体水平研究中。本文研究了 SEIR 和 SIR 框架的随机版本,并证明 SEIR 模型可以有效地近似于具有随时间变化的感染率和恢复率的 SIR 模型。大群体大数函数定律(FLLN)极限和有限群体浓度不等式的推导支持了这种近似的有效性。为了在实践中应用这一近似值,本文介绍了一种基于动态生存分析(DSA)生存分析框架的参数推断方法。通过模拟实验说明,该方法可将 SIR 模型与更复杂的 SEIR 动态模拟数据进行拟合。
{"title":"How to correctly fit an SIR model to data from an SEIR model?","authors":"Wasiur R. KhudaBukhsh , Grzegorz A. Rempała","doi":"10.1016/j.mbs.2024.109265","DOIUrl":"10.1016/j.mbs.2024.109265","url":null,"abstract":"<div><p>In epidemiology, realistic disease dynamics often require Susceptible-Exposed-Infected-Recovered (SEIR)-like models because they account for incubation periods before individuals become infectious. However, for the sake of analytical tractability, simpler Susceptible-Infected-Recovered (SIR) models are commonly used, despite their lack of biological realism. Bridging these models is crucial for accurately estimating parameters and fitting models to observed data, particularly in population-level studies of infectious diseases.</p><p>This paper investigates stochastic versions of the SEIR and SIR frameworks and demonstrates that the SEIR model can be effectively approximated by a SIR model with time-dependent infection and recovery rates. The validity of this approximation is supported by the derivation of a large-population Functional Law of Large Numbers (FLLN) limit and a finite-population concentration inequality.</p><p>To apply this approximation in practice, the paper introduces a parameter inference methodology based on the Dynamic Survival Analysis (DSA) survival analysis framework. This method enables the fitting of the SIR model to data simulated from the more complex SEIR dynamics, as illustrated through simulated experiments.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0025556424001251/pdfft?md5=af4ef0b293b05ec276ca8eb18fbf004f&pid=1-s2.0-S0025556424001251-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141877035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-24DOI: 10.1016/j.mbs.2024.109249
Wisdom S. Avusuglo , Qing Han , Woldegebriel Assefa Woldegerima , Ali Asgary , Jianhong Wu , James Orbinski , Nicola Bragazzi , Ali Ahmadi , Jude Dzevela Kong
The continual social and economic impact of infectious diseases on nations has maintained sustained attention on their control and treatment, of which self-medication has been one of the means employed by some individuals. Self-medication complicates the attempt of their control and treatment as it conflicts with some of the measures implemented by health authorities. Added to these complications is the stigmatization of individuals with some diseases in some jurisdictions. This study investigates the co-infection of COVID-19 and malaria and its related deaths and further highlights how self-medication and stigmatization add to the complexities of the fight against these two diseases using Nigeria as a study case. Using a mathematical model on COVID-19 and malaria co-infection, we address the question: to what degree does the impact of the interaction between COVID-19 and malaria amplify infections and deaths induced by both diseases via self-medication and stigmatization? We demonstrate that COVID-19 related self-medication due to misdiagnoses contributes substantially to the prevalence of disease. The control reproduction numbers for these diseases and quantification of model parameters uncertainties and sensitivities are presented.
{"title":"Assessment of bidirectional impact of stigmatization induced self-medication on COVID-19 and malaria transmissions using mathematical modeling: Nigeria as a case study","authors":"Wisdom S. Avusuglo , Qing Han , Woldegebriel Assefa Woldegerima , Ali Asgary , Jianhong Wu , James Orbinski , Nicola Bragazzi , Ali Ahmadi , Jude Dzevela Kong","doi":"10.1016/j.mbs.2024.109249","DOIUrl":"10.1016/j.mbs.2024.109249","url":null,"abstract":"<div><p>The continual social and economic impact of infectious diseases on nations has maintained sustained attention on their control and treatment, of which self-medication has been one of the means employed by some individuals. Self-medication complicates the attempt of their control and treatment as it conflicts with some of the measures implemented by health authorities. Added to these complications is the stigmatization of individuals with some diseases in some jurisdictions. This study investigates the co-infection of COVID-19 and malaria and its related deaths and further highlights how self-medication and stigmatization add to the complexities of the fight against these two diseases using Nigeria as a study case. Using a mathematical model on COVID-19 and malaria co-infection, we address the question: to what degree does the impact of the interaction between COVID-19 and malaria amplify infections and deaths induced by both diseases via self-medication and stigmatization? We demonstrate that COVID-19 related self-medication due to misdiagnoses contributes substantially to the prevalence of disease. The control reproduction numbers for these diseases and quantification of model parameters uncertainties and sensitivities are presented.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141768395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-20DOI: 10.1016/j.mbs.2024.109262
Marya Sadki, Karam Allali
In this paper, we introduce a stochastic two-strain epidemic model driven by Lévy noise describing the interaction between four compartments; susceptible, infected individuals by the first strain, infected ones by the second strain and the recovered individuals. The forces of infection, for both strains, are represented by saturated incidence rates. Our study begins with the investigation of unique global solution of the suggested mathematical model. Then, it moves to the determination of sufficient conditions of extinction and persistence in mean of the two-strain disease. In order to illustrate the theoretical findings, we give some numerical simulations.
{"title":"Stochastic two-strain epidemic model with saturated incidence rates driven by Lévy noise","authors":"Marya Sadki, Karam Allali","doi":"10.1016/j.mbs.2024.109262","DOIUrl":"10.1016/j.mbs.2024.109262","url":null,"abstract":"<div><p>In this paper, we introduce a stochastic two-strain epidemic model driven by Lévy noise describing the interaction between four compartments; susceptible, infected individuals by the first strain, infected ones by the second strain and the recovered individuals. The forces of infection, for both strains, are represented by saturated incidence rates. Our study begins with the investigation of unique global solution of the suggested mathematical model. Then, it moves to the determination of sufficient conditions of extinction and persistence in mean of the two-strain disease. In order to illustrate the theoretical findings, we give some numerical simulations.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141750145","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-19DOI: 10.1016/j.mbs.2024.109261
José Geiser Villavicencio-Pulido , Rodrigo Robles-Sámano , Brenda Tapia-Santos
The ecological relationship among plants, rhizobacteria and plant consumers has attracted the attention of researchers due to its implications in field crops. It is known that, the rhizosphere is occupied not only by rhizobacteria which grant benefits to the plants but also by bacteria which are detrimental for them. In this work, we construct and analyze a plants–rhizobacteria–plant consumers system. In the modeling process, it is assumed that there is a conditioned interaction between plants and bacteria in the rhizosfera such that there is a mutualistic relationship at low densities of rhizobacteria and the relationship is parasitic or competitive at higher densities of them. Benefits granted by rhizobacteria include mechanisms that increase the plant growth and defense mechanisms against plant consumers. From the analysis of the model and its simplified version, we show that scenarios of coexistence of all populations can occur for a wide range of values of the parameters which describe biotic or abiotic factors; however, these scenarios are in risk since scenarios of exclusion of species can occur simultaneously due to the presence of bistability phenomena. The results obtained can be useful for the decision makers to design interventions strategies on field crops when plant growth-promoting rhizobacteria are used.
{"title":"Sustainable scenarios in a plants–rhizobacteria–plant consumers system are in risk when biotic or abiotic factors change","authors":"José Geiser Villavicencio-Pulido , Rodrigo Robles-Sámano , Brenda Tapia-Santos","doi":"10.1016/j.mbs.2024.109261","DOIUrl":"10.1016/j.mbs.2024.109261","url":null,"abstract":"<div><p>The ecological relationship among plants, rhizobacteria and plant consumers has attracted the attention of researchers due to its implications in field crops. It is known that, the rhizosphere is occupied not only by rhizobacteria which grant benefits to the plants but also by bacteria which are detrimental for them. In this work, we construct and analyze a plants–rhizobacteria–plant consumers system. In the modeling process, it is assumed that there is a conditioned interaction between plants and bacteria in the rhizosfera such that there is a mutualistic relationship at low densities of rhizobacteria and the relationship is parasitic or competitive at higher densities of them. Benefits granted by rhizobacteria include mechanisms that increase the plant growth and defense mechanisms against plant consumers. From the analysis of the model and its simplified version, we show that scenarios of coexistence of all populations can occur for a wide range of values of the parameters which describe biotic or abiotic factors; however, these scenarios are in risk since scenarios of exclusion of species can occur simultaneously due to the presence of bistability phenomena. The results obtained can be useful for the decision makers to design interventions strategies on field crops when plant growth-promoting rhizobacteria are used.</p></div>","PeriodicalId":51119,"journal":{"name":"Mathematical Biosciences","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141736207","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}