Bosen Zhang, Amber L. Hauvermale, Zhiwu Zhang, Alison Thompson, Clark Neely, Aaron Esser, Michael Pumphrey, Kimberly Garland-Campbell, Jianming Yu, Camille Steber, Xianran Li
Modern agriculture is a complex system that demands real-time and large-scale quantification of trait values for evidence-based decisions. However, high-profile traits determining market values often lack high-throughput phenotyping technologies to achieve this objective; therefore, risks of undermining crop values through arbitrary decisions are high. Because environmental conditions are major contributors to performance fluctuation, with the contemporary informatics infrastructures, we proposed enviromic prediction as a potential strategy to assess traits for informed decisions. We demonstrated this concept with wheat falling number (FN), a critical end-use quality trait that significantly impacts wheat market values but is measured using a low-throughput technology. Using 8 years of FN records from elite variety testing trials, we developed a predictive model capturing the general trend of FN based on biologically meaningful environmental conditions. An explicit environmental index that was highly correlated (r = 0.646) with the FN trend observed from variety testing trials was identified. An independent validation experiment verified the biological relevance of this index. An enviromic prediction model based on this index achieved accurate and on-target predictions for the FN trend in new growing seasons. Two applications designed for production fields illustrated how such enviromic prediction models could assist informed decision along the food supply chain. We envision that enviromic prediction would have a vital role in sustaining food security amidst rapidly changing climate. As conducting variety testing trials is a standard component in modern agricultural industry, the strategy of leveraging historical trial data is widely applicable for other high-profile traits in various crops.
{"title":"Harnessing enviromics to predict climate-impacted high-profile traits to assist informed decisions in agriculture","authors":"Bosen Zhang, Amber L. Hauvermale, Zhiwu Zhang, Alison Thompson, Clark Neely, Aaron Esser, Michael Pumphrey, Kimberly Garland-Campbell, Jianming Yu, Camille Steber, Xianran Li","doi":"10.1002/fes3.544","DOIUrl":"https://doi.org/10.1002/fes3.544","url":null,"abstract":"<p>Modern agriculture is a complex system that demands real-time and large-scale quantification of trait values for evidence-based decisions. However, high-profile traits determining market values often lack high-throughput phenotyping technologies to achieve this objective; therefore, risks of undermining crop values through arbitrary decisions are high. Because environmental conditions are major contributors to performance fluctuation, with the contemporary informatics infrastructures, we proposed enviromic prediction as a potential strategy to assess traits for informed decisions. We demonstrated this concept with wheat falling number (FN), a critical end-use quality trait that significantly impacts wheat market values but is measured using a low-throughput technology. Using 8 years of FN records from elite variety testing trials, we developed a predictive model capturing the general trend of FN based on biologically meaningful environmental conditions. An explicit environmental index that was highly correlated (<i>r</i> = 0.646) with the FN trend observed from variety testing trials was identified. An independent validation experiment verified the biological relevance of this index. An enviromic prediction model based on this index achieved accurate and on-target predictions for the FN trend in new growing seasons. Two applications designed for production fields illustrated how such enviromic prediction models could assist informed decision along the food supply chain. We envision that enviromic prediction would have a vital role in sustaining food security amidst rapidly changing climate. As conducting variety testing trials is a standard component in modern agricultural industry, the strategy of leveraging historical trial data is widely applicable for other high-profile traits in various crops.</p>","PeriodicalId":54283,"journal":{"name":"Food and Energy Security","volume":"13 3","pages":""},"PeriodicalIF":5.0,"publicationDate":"2024-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/fes3.544","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140914748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The deposition of atmospheric nitrogen can significantly boost the amount of nitrogen available in various ecosystems, potentially altering the mutualistic association between arbuscular mycorrhizal fungi (AMF) and their host plants. Nevertheless, the precise mechanisms and the degree to which externally induced nitrogen-related changes in AMF functionality might impact Sorghum bicolor (L.) Moench, a plant known for its high mycorrhizal colonization, remains unclear. In this study, the mycorrhizal response affected by environmental N enrichment was addressed by conducting a glasshouse experiment, and four fertilization treatments (N1, N2, N3, and N4, 0, 15, 30, and 60 kg N hm−1 a−1, respectively) were used to simulate N deposition differences over the mycorrhizal response. The changes in mycorrhizal colonization and plant variables during different AMF and N fertilizer applications were investigated. When the gradient's nitrogen levels increased, the mycorrhizal growth response and mycorrhizal nitrogen response showed a pattern of first dropping and then increasing. N-induced changes in the mycorrhizal response were associated with vesicular colonization, arbuscular colonization, and root-length colonization. The variation in the mycorrhizal response over the N concentration gradient highlights the critical role of AMF in agroecosystems.
大气中的氮沉积会显著增加各种生态系统中的氮含量,从而可能改变丛枝菌根真菌(AMF)与其寄主植物之间的互惠关系。然而,外部诱导的与氮有关的变化可能会在多大程度上影响高粱(Sorghum bicolor (L.) Moench)--一种以菌根定殖率高而著称的植物--的确切机制和程度仍不清楚。本研究通过玻璃温室实验研究了环境氮富集对菌根反应的影响,并采用四种施肥处理(N1、N2、N3 和 N4,分别为 0、15、30 和 60 kg N hm-1 a-1)来模拟氮沉积对菌根反应的影响。研究了在施用不同的 AMF 和氮肥时菌根定殖和植物变量的变化。当梯度氮含量增加时,菌根的生长响应和菌根的氮响应呈现先下降后上升的模式。氮引起的菌根反应变化与泡状定植、树胶定植和根长定植有关。菌根反应在氮浓度梯度上的变化凸显了 AMF 在农业生态系统中的关键作用。
{"title":"Shifts of arbuscular mycorrhizal fungal functioning along a simulated nitrogen deposition gradient","authors":"Jian Wang, Chenxi Yang, Haiou Zhang, Tianqing Chen","doi":"10.1002/fes3.542","DOIUrl":"https://doi.org/10.1002/fes3.542","url":null,"abstract":"<p>The deposition of atmospheric nitrogen can significantly boost the amount of nitrogen available in various ecosystems, potentially altering the mutualistic association between arbuscular mycorrhizal fungi (AMF) and their host plants. Nevertheless, the precise mechanisms and the degree to which externally induced nitrogen-related changes in AMF functionality might impact <i>Sorghum bicolor</i> (<i>L.</i>) Moench, a plant known for its high mycorrhizal colonization, remains unclear. In this study, the mycorrhizal response affected by environmental N enrichment was addressed by conducting a glasshouse experiment, and four fertilization treatments (N1, N2, N3, and N4, 0, 15, 30, and 60 kg N hm<sup>−1</sup> a<sup>−1</sup>, respectively) were used to simulate N deposition differences over the mycorrhizal response. The changes in mycorrhizal colonization and plant variables during different AMF and N fertilizer applications were investigated. When the gradient's nitrogen levels increased, the mycorrhizal growth response and mycorrhizal nitrogen response showed a pattern of first dropping and then increasing. N-induced changes in the mycorrhizal response were associated with vesicular colonization, arbuscular colonization, and root-length colonization. The variation in the mycorrhizal response over the N concentration gradient highlights the critical role of AMF in agroecosystems.</p>","PeriodicalId":54283,"journal":{"name":"Food and Energy Security","volume":"13 2","pages":""},"PeriodicalIF":5.0,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/fes3.542","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140559769","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jiameng Chen, Peiyan Zhang, Junming Liu, Jingyuan Deng, Wei Su, Pengxin Wang, Ying Li
Crop growth models, such as the WOrld FOod STudies (WOFOST) model, mimic the mechanistic processes involved in crop development, growth, and yield production. The accuracy of simulation is decreased in unfavorable low-temperature settings because these models do not accurately represent crop response processes in low-temperature stress. Enhancing the WOFOST crop growth model's accuracy in simulating crops' responses to cold temperatures is the aim of this work. Given its vulnerability to low temperatures, the inquiry uses winter wheat in Henan Province as a focal point. It integrates the WHEATGROW wheat phenology model with the Frost model of Lethal Temperature 50 (FROSTOL) inside the framework of the crop growth model. This link aims to improve simulation accuracy and supplement the model's mechanisms, particularly when it comes to the impact of low temperatures on crop development. The study uses Long Short-Term Memory networks to build a yield model that integrates remote sensing data with information from simulated crop models. Under low temperatures, the leaf area index, total above ground biomass, and total weight of storage organs of the model WWF—which combines FROSTOL and WHEATGROW with WOFOST—show a considerable decline. It was discovered that there is a greater improvement in simulation accuracy of the linked model WWF relative to the WOFOST model in frost years than in normal years, based on a comparison analysis between typical frost years and normal years. To be more precise, the improvement is 8.03% in frost years and 1.98% in regular years. When all is said and done, the coupled model advances our knowledge of how winter wheat is impacted by low temperatures.
{"title":"Study on the impact of low-temperature stress on winter wheat based on multi-model coupling","authors":"Jiameng Chen, Peiyan Zhang, Junming Liu, Jingyuan Deng, Wei Su, Pengxin Wang, Ying Li","doi":"10.1002/fes3.543","DOIUrl":"https://doi.org/10.1002/fes3.543","url":null,"abstract":"<p>Crop growth models, such as the WOrld FOod STudies (WOFOST) model, mimic the mechanistic processes involved in crop development, growth, and yield production. The accuracy of simulation is decreased in unfavorable low-temperature settings because these models do not accurately represent crop response processes in low-temperature stress. Enhancing the WOFOST crop growth model's accuracy in simulating crops' responses to cold temperatures is the aim of this work. Given its vulnerability to low temperatures, the inquiry uses winter wheat in Henan Province as a focal point. It integrates the WHEATGROW wheat phenology model with the Frost model of Lethal Temperature 50 (FROSTOL) inside the framework of the crop growth model. This link aims to improve simulation accuracy and supplement the model's mechanisms, particularly when it comes to the impact of low temperatures on crop development. The study uses Long Short-Term Memory networks to build a yield model that integrates remote sensing data with information from simulated crop models. Under low temperatures, the leaf area index, total above ground biomass, and total weight of storage organs of the model WWF—which combines FROSTOL and WHEATGROW with WOFOST—show a considerable decline. It was discovered that there is a greater improvement in simulation accuracy of the linked model WWF relative to the WOFOST model in frost years than in normal years, based on a comparison analysis between typical frost years and normal years. To be more precise, the improvement is 8.03% in frost years and 1.98% in regular years. When all is said and done, the coupled model advances our knowledge of how winter wheat is impacted by low temperatures.</p>","PeriodicalId":54283,"journal":{"name":"Food and Energy Security","volume":"13 2","pages":""},"PeriodicalIF":5.0,"publicationDate":"2024-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/fes3.543","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140345739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Robert MacKenzie, Sami Ullah, Christine H. Foyer
The cover image is based on the Review Article Building forests for the future by A. Robert MacKenzie et al., https://doi.org/10.1002/fes3.518. Image Credit: Ian Crompton.