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2009 2nd International Conference on Biomedical Engineering and Informatics最新文献

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Clinical Information Driven Ensemble Clustering for Inferring Robust Tumor Subtypes 临床信息驱动的集成聚类推断稳健肿瘤亚型
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305032
Hai-Yang Wang, Min Ding, Xia Li, Bairong Shen
Inferring tumor subtypes based on the gene expression data alone does not appear to be as powerful as expected for the lack of robustness and clinical meaning. The ultimate aim of clustering tumor samples should be to support clinical evaluation or treatment. Therefore, clustering procedure should closely integrate the clinical outcome and/or treatment information for final representation of the tumor homogeneity and heterogeneity. In this work, we developed an ensemble clustering method guided by the clinical outcome and treatment information for the identification of the robust and clinically meaningful tumor subtypes. Our method was expected to yield more robust and clinically relevant results than other commonly used methods and to give us comprehensive understanding of tumor heterogeneity. Keywords-Ensemble clustering, survival analysis, tumor heterogeneity, clinical outcome
由于缺乏稳健性和临床意义,仅根据基因表达数据推断肿瘤亚型似乎并不像预期的那样强大。聚类肿瘤样本的最终目的应该是支持临床评估或治疗。因此,聚类过程应紧密结合临床结果和/或治疗信息,以最终表征肿瘤的同质性和异质性。在这项工作中,我们开发了一种以临床结果和治疗信息为指导的集成聚类方法,用于识别稳健且具有临床意义的肿瘤亚型。我们的方法有望产生比其他常用方法更可靠和临床相关的结果,并使我们全面了解肿瘤异质性。关键词:集合聚类,生存分析,肿瘤异质性,临床结果
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引用次数: 2
Analysis of Bio-Impedance Measurement Method via Electromagnetic Induction Using Probe-Coil 探针线圈电磁感应生物阻抗测量方法分析
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305564
Chao Wang, C. Xu, Ming Zhang, W. Yin
The bio-impedance measurement method via electromagnetic induction has the non-contact character which overcomes influences of the electrode's contact impedance to measurements. However its measurement results have a highly complicated relationship with impedance properties of measured objects. In order to discover the regularity, this paper deduces an analytical resolution model using a probe-coil and analyzes affections of conductivity and lift-off to mutual inductance variation. The achieved disciplinary characters are valuable not only to this measurement method using the probe-coil but also to the data analysis in Electromagnetic Tomography (EMT).
电磁感应生物阻抗测量方法具有非接触的特点,克服了电极接触阻抗对测量的影响。然而,它的测量结果与被测对象的阻抗特性有着高度复杂的关系。为了发现互感变化的规律,本文用探针线圈推导了解析解析模型,分析了电导率和升力对互感变化的影响。所获得的学科特性不仅对这种探针线圈测量方法有价值,而且对电磁层析成像(EMT)的数据分析也有价值。
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引用次数: 0
Conductivity Reconstruction of Human Head Tissues by Means of MREIT MREIT在人体头部组织电导率重建中的应用
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305454
Dan-dan Yan, Jing Li
This paper focuses on the inhomogeneous conductivity reconstruction of human head tissues by means of magnetic resonance electrical impedance tomography (MREIT). MREIT is a recently introduced and non-invasive conductivity imaging modality that combines Current Density Imaging (CDI) and traditional Electrical Impedance Tomography (EIT) techniques. MREIT, designed to deal with the well-known ill-posed problem in traditional EIT, has been applied to reconstruct the conductivities of human head tissues. We have developed two realistic geometry finite element method (FEM) head models, with five tissues including the scalp, skull, CSF, gray matter and white matter, based on the hexahedral element and the tetrahedral element, respectively. The J-substitution MREIT algorithm is used in our simulation for its easy realization. The present simulation results show that the MREIT algorithm combined with the realistic geometry FEM head model can reconstruct the inhomogeneous human head tissue conductivity distributions with higher accuracy. Our work so far suggests that the proposed MREIT algorithms can provide useful conductivity information for solving the EEG/MEG forward/inverse problems, and for further investigations on human head tissues using MREIT.
利用磁共振电阻抗断层扫描(MREIT)对人体头部组织的非均匀电导率进行了重建。MREIT是一种结合电流密度成像(CDI)和传统电阻抗断层成像(EIT)技术的非侵入性电导率成像方式。MREIT是为了解决传统EIT中众所周知的不适定问题而设计的,已被用于重建人体头部组织的电导率。基于六面体单元和四面体单元,分别建立了包含头皮、颅骨、脑脊液、灰质和白质等5个组织的真实几何有限元头部模型。仿真中采用了j代入MREIT算法,该算法易于实现。仿真结果表明,结合真实几何有限元头部模型的MREIT算法可以较好地重建非均匀的人体头部组织电导率分布。到目前为止,我们的工作表明,所提出的MREIT算法可以为解决EEG/MEG正/逆问题提供有用的电导率信息,并为使用MREIT进一步研究人类头部组织提供有用的电导率信息。
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引用次数: 0
A New 3D Segmentation Algorithm Based on 3D PCNN for Lung CT Slices 基于三维PCNN的肺CT切片三维分割新算法
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305554
Qian Chang, Jun Shi, Zhiheng Xiao
Three-dimension (3D) based image data analysis has an important role for significantly improving the detection and diagnosis of lung disease with computed tomography (CT). In this paper, we proposed a new volume-based 3D segmentation algorithm based on the extended 3D pulse coupled neural network (PCNN) model. This algorithm was successfully used to segment the lung field in CT slice with the mean distance, root means square distance and Tanimoto coefficient of 0.0029±0.0005, 0.0715±0.0056, 0.9760±0.0093, respectively. Furthermore, the means running time was only 273s, which was much less than those of 2D PCNN segmentation algorithm and Otsu algorithm. The experimental results demonstrated the extended 3D PCNN segmentation algorithm had the advantage of short execution time with good segmentation accuracy. The results suggest that the proposed 3D PCNN algorithm can be potentially used for lung computer-aided diagnosis.
基于三维(3D)的图像数据分析对于显著提高计算机断层扫描(CT)肺部疾病的检测和诊断具有重要作用。本文提出了一种基于扩展三维脉冲耦合神经网络(PCNN)模型的基于体的三维分割算法。该算法成功地对CT切片肺场进行了分割,平均距离为0.0029±0.0005,均方根距离为0.0715±0.0056,谷本系数为0.9760±0.0093。平均运行时间仅为273秒,远小于2D PCNN分割算法和Otsu算法。实验结果表明,扩展的三维PCNN分割算法具有执行时间短、分割精度高的优点。结果表明,所提出的三维PCNN算法具有应用于肺部计算机辅助诊断的潜力。
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引用次数: 5
31P MRS Data Diagnosis of Hepatocellular Carcinoma Based on Support Vector Machine 基于支持向量机的31P MRS数据诊断肝细胞癌
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5302035
Tingting Fu, Yihui Liu, Jinyong Cheng, Qiang Liu, Baopeng Li
SVM (Support Vector Machine) is a new machinelearning technique which is developed based on statistical theory and it is applied in the various fields in recent years. We use SVM model based on P MRS (Phosphorus magnetic resonance spectroscopy) data to distinguish three categories of hepatocellular carcinoma, hepatic cirrhosis and normal hepatic tissue. The recognition accuracy of the three categories was obtained, and the classification accuracy of SVM based on polynomial and radial basis function kernel is compared. The result of experiments shows that SVM model based on P MRS data provides diagnostic prediction of liver in vivo, and the performance based on polynomial is better than based on radial basis function kernel. KeywordsSVM; 31P MRS; Kernel Function; Hepatocellular Carcinoma
支持向量机是近年来在统计理论的基础上发展起来的一种新的机器学习技术,在各个领域得到了广泛的应用。我们使用基于P MRS(磷磁共振波谱)数据的SVM模型来区分肝细胞癌、肝硬化和正常肝组织三种类型。得到了三类的识别精度,并比较了基于多项式和径向基函数核的支持向量机的分类精度。实验结果表明,基于P - MRS数据的SVM模型能够提供活体肝脏的诊断预测,且基于多项式的性能优于基于径向基函数核的性能。KeywordsSVM;31 p MRS;核函数;肝细胞癌
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引用次数: 0
A Reduction Method of Three-Dimensional Point Cloud 一种三维点云的约简方法
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305186
Weiwei Song, S. Cai, Bo Yang, W. Cui, Yanfang Wang
Recently, non-contact measurement technology has improved significantly. With the increasing of the accuracy and the speed of data acquisition of 3D laser scanners, the amount of point data has increased dramatically . 3D laser scanners generate up to thousands of points per second, which have become a burden of both computation and store of the data. It is quite important, therefore, to reduce the amount of acquire point data and convert them into formats required by reconstruction processes while maintaining the accuracy. In this paper, we presented a convenient way to solve the problem. The scattered point cloud data is first regularized and compressed by the octree structure and then reduced further according to a curvature rule. Compared with the other reduction methods, the method presented in this paper not only reduced the arithmetic complication on space and time , but also preserved the characteristic of the original object and finished the data reduction quickly. This paper presents a novel approach of point cloud reduction based on octree structure and curvature rule. The proposed method not only reduces the amount of point data and computational complexity but also makes the point cloud data be organized, which makes it easy to be traversed and searched in reconstruction process. The proposed methods are applied to different types of surfaces and the results are discussed.
近年来,非接触式测量技术有了显著的进步。随着三维激光扫描仪数据采集精度的提高和速度的提高,点数据量急剧增加。三维激光扫描仪每秒产生数千个点,这已经成为计算和存储数据的负担。因此,在保证精度的前提下,减少采集点数据的数量,并将其转换为重建过程所需的格式是非常重要的。在本文中,我们提出了一种简便的解决方法。首先对分散的点云数据进行八叉树结构的正则化和压缩,然后根据曲率规则进行进一步的约简。与其他约简方法相比,本文提出的方法不仅降低了算法在空间和时间上的复杂度,而且保留了原始目标的特征,快速完成了数据约简。提出了一种基于八叉树结构和曲率规则的点云约简方法。该方法不仅减少了点数据量和计算复杂度,而且使点云数据具有组织性,便于在重建过程中遍历和搜索。将所提出的方法应用于不同类型的表面,并对结果进行了讨论。
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引用次数: 6
Application of Semiconductor Quantum Dots for Breast Cancer Cell Sensing 半导体量子点在乳腺癌细胞传感中的应用
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305551
Hengyi Xu, Hua Wei, Zoraida P. Aguilar, Jamie L. Waldron, Andrew Z. Wang
a brighter signal compared to the organic dye using similar parameters and the same number of cells. Future directions will involve elimination of non-specific signal as well as quantification to establish the limit of detection for the QD-based cell sensing.
使用相似的参数和相同数量的细胞,与有机染料相比,信号更亮。未来的方向将包括消除非特异性信号以及量化以建立基于量子点的细胞传感的检测极限。
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引用次数: 5
Evaluation Model for Breast Cancer Susceptibly Gene and its Implementation Using Cytoscape 乳腺癌易感基因评价模型及其细胞景观实现
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305530
Yan Jiang, Chao Xu
Based on the analysis of some literature, this paper proposes a multi-criteria evaluation model for breast cancer susceptibility gene and implements the evaluation using Cytoscape. Most of the data come from the online supplementary table of the literature, and a little missing is completed by the BiNGO plugin of Cytoscape. The Pub Med literature search shows CDC2 gene ranked first in our final evaluation list showed by Cytoscape has a close relation with breast cancer genes. Meanwhile TopBP1 gene ranked second and HMMR gene ranked sixth are proposed as breast cancer susceptibility genes by previous research. This shows our multi-criteria evaluation model can represent the complex relationship between genes and breast cancer susceptibly correctly. So other genes in the evaluation result should also be focused on. Besides, the practical application indicates that Cytoscape is a powerful biological analytical tool. Multi-criteria decision method is mainly used to resolve the problem with multi-criteria, the characteristic of which is the non-commensurable and incompatibility between objectives. The relationship between human genes is complicated, so some criteria are needed to find out those relationships and evaluate them. The previous research has given out the evaluation measure. Consequently multi-objective evaluation can be applied to analyze the relationship between researched gene and known breast cancer genes. Multi-criteria evaluation is a method to analyze the multi- criteria decision problem. The main procedures are: determine evaluation criterion, identify attribute, construct alternative set, estimate parameter, and evaluate by some calculation method.
本文在对部分文献分析的基础上,提出了乳腺癌易感基因的多标准评价模型,并利用Cytoscape实现了评价。大部分数据来自文献的在线补充表,少量缺失由Cytoscape的BiNGO插件完成。Pub Med文献检索显示,CDC2基因在我们最终的Cytoscape显示的评价列表中排名第一,与乳腺癌基因关系密切。同时,TopBP1基因和HMMR基因被既往研究提出为乳腺癌易感基因,TopBP1基因排名第二,HMMR基因排名第六。这说明我们的多标准评价模型能够较好地反映基因与乳腺癌之间的复杂关系。因此评价结果中的其他基因也应予以关注。此外,实际应用表明,Cytoscape是一种强大的生物分析工具。多准则决策方法主要用于解决多准则问题,多准则的特点是目标之间不可通约和不相容。人类基因之间的关系是复杂的,因此需要一些标准来发现这些关系并对其进行评价。前人的研究已经给出了评价指标。因此,多目标评价可用于分析研究基因与已知乳腺癌基因之间的关系。多准则评价是分析多准则决策问题的一种方法。主要步骤为:确定评价标准,识别属性,构造备选集,估计参数,并用计算方法进行评价。
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引用次数: 2
Quantified Vector Oriented Tongue Color Classification 量化矢量导向舌色分类
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305118
Bo Huang, Kuanquan Wang, Xiangqian Wu, Dongyu Zhang, Naimin Li
Tongue diagnosis is a distinctive and essential diagnostic method. The color category of the tongue can be utilized to discover pathological changes on the tongues for identifying diseases. In this paper, a novel scheme is established which classify tongue images into various categories, including coating and substance categories. Firstly, we proposed a two level hierarch clustering method for quantizing all pixels into numerous vectors of feature value. Each vector can code a very small sub-class in RGB color space. Secondly, we utilized the vectors' distribution of these sub-classes to represent approximate chromatic information of tongue images. Then, a Bayesian Network is employed to model the relationship between these quantized vectors and tongue color categories. The effectiveness of this scheme is tested on a group of 418 tongue images, and the classification results are reported.
舌诊是一种独特而又必不可少的诊断方法。舌头的颜色类别可以用来发现舌头的病理变化,从而识别疾病。本文建立了一种新的舌形图像分类方案,将舌形图像分为不同的类别,包括涂层类别和物质类别。首先,提出了一种两级层次聚类方法,将所有像素量化为多个特征值向量;每个向量都可以在RGB色彩空间中编码一个非常小的子类。其次,我们利用这些子类的向量分布来表示舌头图像的近似颜色信息。然后,利用贝叶斯网络对这些量化向量与舌头颜色类别之间的关系进行建模。在418张舌形图像上对该方法进行了有效性测试,并给出了分类结果。
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引用次数: 3
Bipolar EEG Analysis Based on Cross Spectrum: Focal Detection of Slowing Wave for Automatic EEG Interpretation 基于交叉谱的双相脑电图分析:用于脑电图自动解释的慢波焦点检测
Pub Date : 2009-10-30 DOI: 10.1109/BMEI.2009.5305322
Bei Wang, T. Sugi, Xingyu Wang, A. Ikeda, T. Nagamine, H. Shibasaki, Masatoshi Nakamura
EEG is represented to referential derivation with ear lobe reference and bipolar derivations for quantitative inter- pretation. When the ear lobe was activated, referential derivation with ear lobe reference was contaminated by ear lobe artifacts. In this study, the focus and extension of EEG components were estimated based on the cross spectrum of bipolar derivation. A referential derivation was constructed by choosing the electrodes out of the focus and extension area to obtain the distribution of EEG components. The constructed referential derivation can avoid the artifacts of ear lobe activation for quantitative EEG interpretation. Keywords-cross spectrum; bipolar derivation; focal and extension; automatic EEG interpretation; slowing wave
脑电图用耳垂参考和双极导数表示为参考导数进行定量解释。当耳垂被激活时,使用耳垂参考的参考导数会受到耳垂伪影的污染。在本研究中,基于双极衍生的交叉谱估计了脑电成分的焦点和外延。通过在焦点和延伸区域中选取电极,构造参考导数,得到脑电信号分量的分布。构造的参考导数可以避免耳垂激活的伪影,用于定量脑电解释。Keywords-cross频谱;双极推导;焦点和延伸;脑电图自动判读;慢波
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引用次数: 3
期刊
2009 2nd International Conference on Biomedical Engineering and Informatics
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