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Surveillance of coronavirus in wild mammals seized and rescued by the National Forest and Wildlife Service of Peru 对秘鲁国家森林和野生动物管理局捕获和救助的野生哺乳动物冠状病毒进行监测。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-11-02 DOI: 10.1016/j.actatropica.2024.107453
Carol Sanchez-Chicana , Lisseth M. Leiva , Juan Jimenez-Chunga , Walter Silva , Javier Jara , Teresa Lopez-Urbina , Armando E. Gonzalez , Miguel Rojas , Luis A. Gomez-Puerta
Coronaviruses are common around the world and infect a wide variety of animals, including domestic and wild ones. They are characterized by causing respiratory, enteric, hepatic, and neurological diseases of varying severity, from asymptomatic to severe. Wild animals play a crucial role in this group of viruses since they can act as hosts or reservoirs for pathogenic species of humans and domestic animals. The purpose of this study was to molecularly identify coronaviruses present in wild mammals seized and rescued by the National Forestry and Wildlife Service (SERFOR) of Peru. We molecularly analyzed tracheal and rectal swabs from 90 wild mammals seized and/or rescued by SERFOR, partially amplifying the coronavirus RdRp gene. Ten of the 90 animals studied (11.1%) were positive only for Alphacoronavirus. These were non-human primates (Aotus sp., Sapajus apella, and Saimiri sciureus), the crab-eating raccoon (Procyon cancrivorus), and the South American sea lion (Otaria flavescens). The partial sequence analysis of the RdRp gene revealed that nine sequences belonged to the Pedacovirus subgenus and shared 99.1% nucleotide identity with the porcine epidemic diarrhea virus (PEDV), and only one sequence belonged to the Tegacovirus subgenus and shared 95.6% identity with the Feline coronavirus (FCoV). The results show that various wild mammal species from Peru can act as hosts for coronaviruses capable of infecting domestic species. Due to this, it is necessary to implement measures that help us identify the genera and species of coronaviruses in these species to prevent and contain future epidemics or pandemics resulting from the high rate of recombination and mutation of this virus.
冠状病毒在世界各地都很常见,可感染多种动物,包括家畜和野生动物。冠状病毒的特点是引起呼吸道、肠道、肝脏和神经系统疾病,病情轻重不一,从无症状到病情严重不等。野生动物在这类病毒中扮演着至关重要的角色,因为它们可以成为人类和家畜病原体的宿主或储库。本研究的目的是对秘鲁国家森林和野生动物管理局(SERFOR)捕获和救助的野生哺乳动物体内的冠状病毒进行分子鉴定。我们对 SERFOR 捕获和/或救助的 90 只野生哺乳动物的气管和直肠拭子进行了分子分析,部分扩增了冠状病毒 RdRp 基因。在研究的 90 只动物中,有 10 只(11.1%)仅对阿尔法康病毒呈阳性反应。这些动物是非人灵长类动物(Aotus sp.、Sapajus apella 和 Saimiri sciureus)、食蟹浣熊(Procyon cancrivorus)和南美海狮(Otaria flavescens)。对RdRp基因的部分序列分析表明,9个序列属于Pedacovirus亚属,与猪流行性腹泻病毒(PEDV)有99.1%的核苷酸同一性,只有1个序列属于Tegacovirus亚属,与猫冠状病毒(FCoV)有95.6%的同一性。研究结果表明,秘鲁的各种野生哺乳动物可以作为冠状病毒的宿主,感染家养动物。因此,有必要采取措施,帮助我们确定这些物种中冠状病毒的属和种,以预防和控制这种病毒的高重组率和变异所导致的未来流行病或大流行。
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引用次数: 0
Detection of Theileria in cattle ticks (Rhipicephalus microplus) (Canestrini, 1888) in upper-northeastern Thailand 在泰国东北部上游地区的牛虱(Rhipicephalus microplus)(Canestrini,1888 年)中检测到 Theileria。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.actatropica.2024.107452
Kanchana Thinnabut , Rutchanee Rodpai , Oranuch Sanpool , Wanchai Maleewong , Ubon Tangkawanit
Theileria parasites were investigated from cattle ticks (Rhipicephalus microplus (Canestrini, 1888)) collected in 12 provinces in upper-northeastern Thailand based on the sequences of 18S rRNA and MPSP gene. Polymerase chain reactions (PCRs) and sequencing specific regions for the 18S rRNA gene revealed two species of Theileria pathogens; T. orientalis (n = 42) and T. sinensis (n = 31) with 94.50−100 % identity. In the provinces of upper-northeastern Thailand, the nucleotide diversity of Theileria's 18S rRNA for T. sinensis and T. orientalis were 0 % and 1.3 %. respectively. The MPSP gene was used to categorize the T. orientalis genotypes. The sequences were compared with those available in the public database (GenBank) for species identification. Phylogenetic trees of Theileria were constructed from the MPSP gene sequences of our amplicons and those available in GenBank using maximum-likelihood and neighbor-joining analyses. The results revealed three identified genotypes: type 3, 5, and 7. Although the main carriers of T. orientalis are ticks in the genus Haemaphysalis, T. orientalis was the most frequently found in R. microplus in upper-northeastern Thailand. Theileria was frequent in Nong Khai, Mukdahan, and Loei, three Thai provinces that bordered the Lao PDR close to the Mekong River. Epidemiological surveys and control strategies in this region should be considered.
根据 18S rRNA 和 MPSP 基因的序列,研究了从泰国东北部上游 12 个府采集的牛虱(Rhipicephalus microplus (Canestrini, 1888))中的寄生虫。聚合酶链式反应(PCR)和 18S rRNA 基因特定区域的测序结果显示,病原菌有两个物种:T. orientalis(n=42)和 T. sinensis(n=31),其同一性为 94.50%-100%。在泰国上东北部各府,T. sinensis 和 T. orientalis 的丝核菌 18S rRNA 核苷酸多样性分别为 0% 和 1.3%。利用 MPSP 基因对东方蓟马的基因型进行了分类。将序列与公共数据库(GenBank)中的序列进行比较,以确定物种。使用最大似然法和邻接分析法,根据我们的扩增子的 MPSP 基因序列和 GenBank 中的序列构建了东方蓟马的系统发生树。结果发现了三种已确定的基因型:3 型、5 型和 7 型。虽然 T. orientalis 的主要携带者是 Haemaphysalis 属的蜱虫,但在泰国上东北部的 R. microplus 中最常发现 T. orientalis。在靠近湄公河、与老挝人民民主共和国接壤的泰国廊开府、木爹罕府和乐毅府,东方蜱属螨虫十分常见。应考虑在这一地区开展流行病学调查并制定控制策略。
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引用次数: 0
Influence of metalloproteinase-3 (-1171 5A>6A) polymorphism on periportal fibrosis in patients with schistosomiasis mansoni, Pernambuco, Brazil 金属蛋白酶-3(-1171 5A>6A)多态性对巴西伯南布哥州曼森血吸虫病患者肾周围纤维化的影响。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.actatropica.2024.107450
Thaysa Carolina Gonçalves Silva , Paula Carolina Valença Silva , Elker Lene Santos de Lima , Maria Tereza Cartaxo Muniz , Edmundo Pessoa Lopes , Ana Lúcia Coutinho Domingues
In schistosomiasis mansoni (SM), periportal fibrosis (PPF) arises due to an inflammatory response exacerbated by parasite eggs in the intrahepatic portal space, culminating in the deposition of collagen and extracellular matrix proteins. This fibrosis results from a remodeling process of the extracellular matrix, in which metalloproteinases play a significant role. The study evaluated the association between MMP-3 polymorphism (-1171 5A>6A) (rs 3025058) and sociodemographic factors with PPF in individuals with SM. This is an analytical cross-sectional study involving 242 individuals infected with S. mansoni, of these 122 were diagnosed with hepatosplenic form (HS) and 119 hepatointestinal form (HI), all from the state of Pernambuco, Brazil. Polymerase chain reaction with restriction enzyme digestion (Psyl) was used to determine the MMP-3 polymorphism (-1171 5A>6A). There was a significant association between the male gender and the HS form (OR = 1.7623 95% CI [1.0481–2.9631]; p-value = 0.0439) as well as individuals aged over 41, also had a greater chance of developing this clinical form of the disease (OR = 2.8299; 95% CI [1.5211–5.2650]; p-value = 0.0014), with greater emphasis on individuals over 61 years old (OR= 8.5541; 95% CI [3.6895–19.8326], p-value= 0.0000). There was no statistically significant association between the MMP-3 polymorphism (-1171 5A>6A) between the clinical groups (5A6A CI [0.7144–1.9879] p-value 0.5882 5A5A CI [0.0912–2.9231] p-value 0.7331 5A6A / 5A5A CI [0.6904–1.8937] p-value 0.6949). In conclusion, the results showed no association between the MMP-3 polymorphism (-1171 5A>6A) and the development of PPF. In addition, males, and age over 41 were predictive factors for the HS form of the disease in this Brazilian population.
在曼氏血吸虫病(SM)中,肝门静脉周围纤维化(PPF)是由于肝门静脉内寄生虫卵加剧了炎症反应,最终导致胶原蛋白和细胞外基质蛋白沉积。这种纤维化是细胞外基质重塑过程的结果,金属蛋白酶在其中发挥了重要作用。本研究评估了 SM 患者的 MMP-3 多态性(-1171 5A>6A)(rs 3025058)和社会人口因素与 PPF 之间的关联。这是一项横断面分析研究,涉及 242 名曼氏沙门氏菌感染者,其中 122 人被诊断为肝脾型(HS),119 人被诊断为肝肠型(HI),他们都来自巴西伯南布哥州。聚合酶链反应与限制性酶消化(Psyl)被用来确定 MMP-3 的多态性(-1171 5A>6A)。男性性别与 HS 形态之间存在明显关联(OR = 1.7623 95% CI [1.0481-2.9631];P 值 = 0.0439),41 岁以上的人患这种临床形态疾病的几率也更大(OR = 2.8299;95% CI [1.5211-5.2650];P 值 = 0.0014),61 岁以上者的发病率更高(OR= 8.5541;95% CI [3.6895-19.8326],P 值 = 0.0000)。临床组之间的 MMP-3 多态性(-1171 5A>6A)之间没有统计学意义上的显著关联(5A6A CI [0.7144-1.9879] p-value 0.5882 5A5A CI [0.0912-2.9231] p-value 0.7331 5A6A / 5A5A CI [0.6904-1.8937] p-value 0.6949)。总之,研究结果表明,MMP-3 多态性(-1171 5A>6A)与 PPF 的发生没有关联。此外,在这一巴西人群中,男性和 41 岁以上是预测 HE 型疾病的因素。
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引用次数: 0
An immuno-inflammatory profiling of asymptomatic individuals in a malaria endemic area in Uganda 对乌干达疟疾流行地区无症状人群的免疫炎症分析。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-10-31 DOI: 10.1016/j.actatropica.2024.107446
Bandar Hasan Saleh , Allan Lugaajju , Muyideen Kolapo Tijani , Lena Danielsson , Ulrika Morris , Kristina E M Persson
Malaria caused by Plasmodium falciparum leads to the destruction of red blood cells (RBCs). A better understanding of how naturally immune individuals control infections should be valuable for future vaccine studies. Antibodies against RBCs and RBC surface antigens were measured together with different inflammatory markers in healthy adults living in a malaria endemic area of Uganda and compared to Swedish healthy adults. Antibodies binding to RBCs were clearly elevated in Ugandans compared to Swedish samples, and for RBC surface antigens the Ugandans had higher levels of antibodies against JMH, but not against Cromer or Kell. Twenty-eight percent of the Ugandans were PCR-positive for P. falciparum, and these had higher levels of IgG against parasite extract and more inhibition in functional growth/invasion assays, but levels of antibodies against RBC, RBC surface antigens, results from Direct Antiglobulin Tests (DAT) and indirect antiglobulin tests were similar when compared with PCR-negative individuals. When inflammatory markers (α-1-antitrypsin, haptoglobin, orosomucoid/α-1-acid glycoprotein, CRP, IgG, IgA and IgM) were measured there were in general almost no signs of inflammation except for clearly elevated levels of IgG. Some had low levels of haptoglobin and for orosomucoid more than half of the individuals had clearly reduced levels. There was no correlation between the inflammatory markers and PCR-positivity, antibodies against RBCs or parasites. In conclusion, for healthy adults living in a malaria endemic area, there was a clear presence of antibodies against RBCs in parallel with high levels of IgG and almost no signs of inflammation, even though many individuals were carrying parasites.
由恶性疟原虫引起的疟疾会导致红细胞(RBC)的破坏。更好地了解天然免疫个体如何控制感染对未来的疫苗研究很有价值。研究人员对生活在乌干达疟疾流行地区的健康成年人进行了红细胞抗体和红细胞表面抗原以及不同炎症指标的测定,并与瑞典健康成年人进行了比较。与瑞典样本相比,乌干达人体内与红细胞结合的抗体明显升高;在红细胞表面抗原方面,乌干达人体内针对JMH的抗体水平较高,但针对Cromer或Kell的抗体水平并不高。28%的乌干达人对恶性疟原虫的PCR检测呈阳性,这些人体内针对寄生虫提取物的IgG水平较高,在功能性生长/侵入试验中的抑制作用也更强,但针对红细胞、红细胞表面抗原的抗体水平,以及直接抗球蛋白试验(DAT)和间接抗球蛋白试验的结果与PCR检测阴性的人相似。在测量炎症标记物(α-1-抗胰蛋白酶、隐球蛋白、口服类粘蛋白/α-1-酸糖蛋白、CRP、IgG、IgA 和 IgM)时,除了 IgG 水平明显升高外,一般几乎没有炎症迹象。有些人的血红蛋白水平较低,半数以上的人的类橙皮苷水平明显降低。炎症指标与 PCR 阳性、红细胞抗体或寄生虫抗体之间没有相关性。总之,对于生活在疟疾流行地区的健康成年人来说,尽管许多人身上都有寄生虫,但他们身上明显存在针对红细胞的抗体,同时IgG水平也很高,而且几乎没有炎症迹象。
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引用次数: 0
Emerging zooanthroponotic risks: Detection of the human norovirus GII.4 Sydney[P31] strain in a domestic dog in Brazil 新出现的动物人类风险:在巴西的一只家犬中检测到人类诺罗病毒 GII.4_Sydney[P31] 株。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-10-30 DOI: 10.1016/j.actatropica.2024.107449
Lais Sampaio de Azevedo , Vanessa Cristina Martins Silva , Raquel Guiducci , Simone Guadagnucci , Fernanda Faria Costa , Monique Beerens Abdul Ghani , Ricardo Duarte Lopes , Antonio Charlys da Costa , Lia Cunha , Marcilio Figueredo Lemos , Adriana Parise , Regina Célia Moreira , Adriana Luchs
Recent increases in zoonotic diseases underscore the integration of companion animals into urban environments, posing complex transmission risks and highlighting the necessity of One Health approaches. Respiratory and enteric viruses have been consistently linked to interspecies transmission between humans and animals. This study aimed to assess the circulation of human noroviruses (NoV), human adenoviruses (HAdV), enteroviruses (EV), parechoviruses (PeV-A), human bocaviruses (HBoV), hepatitis A (HAV) and E viruses (HEV), Influenza A and B viruses (Flu A/B), respiratory syncytial virus (RSV), and SARS-CoV-2 in domestic dogs and cats in Brazil to understand potential zooanthroponosis risks. Between 2012 and 2021, 600 fecal samples from dogs and cats (516 and 84, respectively) were collected at small animal clinics in São Paulo state, Brazil. The specimens underwent in-house qPCR screening for HBoV and HAdV, while EV, PeV-A, NoV, and HEV were tested using in-house RT-qPCR. SARS-CoV-2, Flu A/B, and RSV were investigated with a commercial RT-qPCR kit assay. HAV detection utilized conventional nested (RT)-PCR. Positive samples were sequenced for molecular characterization and phylogenetic analysis. NoV was detected in 0.2 % (1/600) of the animals, while all other investigated viruses tested negative. The NoV-positive sample, collected in 2012 from a pet dog, was identified as genotype GII.4_Sydney[P31]. The Dog/BRA/2012/GII.4_Sydney[P31]/IAL-M21 strain exhibited a close genetic relationship to Brazilian human and environmental NoV GII.4_Sydney[P31] strains, with 98.1–99.2 % nucleotide similarity in ORF1 and 99.2–99.6 % in ORF2 sequences, suggesting interspecies transmission. Pet dogs are frequently exposed to human fecal-borne viruses, highlighting the potential for zooanthroponotic transmission due to their close interaction with humans in shared environments. There is an urgent need to enhance surveillance studies in companion animals to better understand the implications of detecting human NoV strains in pets, as NoV could potentially act as a reverse zoonotic disease in households, animal hospitals, or shelters worldwide.
最近人畜共患病的增加凸显了伴侣动物与城市环境的融合,带来了复杂的传播风险,突出了 "一体健康 "方法的必要性。呼吸道和肠道病毒一直与人类和动物之间的种间传播有关。本研究旨在评估巴西家犬和家猫中人类诺罗病毒(NoV)、腺病毒(HAdV)、肠道病毒(EV)、帕雷奇病毒(PeV-A)、博卡病毒(HBoV)、甲型肝炎病毒(HAV)和戊型肝炎病毒(HEV)、甲型和乙型流感病毒(Flu A/B)、呼吸道合胞病毒(RSV)以及 SARS-CoV-2 的传播情况,以了解潜在的动物传染病风险。2012 年至 2021 年间,巴西圣保罗州的小动物诊所收集了 600 份狗和猫的粪便样本(分别为 516 份和 84 份)。这些样本接受了 HBoV 和 HAdV 的内部 qPCR 筛查,同时使用内部 RT-qPCR 对 EV、PeV-A、NoV 和 HEV 进行了检测。SARS-CoV-2、Flu A/B 和 RSV 采用商用 RT-qPCR 试剂盒检测。HAV 检测采用传统的巢式 (RT)-PCR。对阳性样本进行了测序,以确定其分子特征并进行系统发育分析。在 0.2%(1/600)的动物中检测到了 NoV,而所有其他调查病毒的检测结果均为阴性。2012 年从一只宠物狗身上采集到的 NoV 阳性样本被鉴定为基因型 GII.4_Sydney[P31]。Dog/BRA/2012/GII.4_Sydney[P31]/IAL-M21株与巴西人类和环境中的NoV GII.4_Sydney[P31]株有密切的遗传关系,ORF1核苷酸相似度为98.1-99.2%,ORF2序列相似度为99.2-99.6%,表明存在种间传播。宠物狗经常接触到人类粪便传播的病毒,这凸显了由于宠物狗与人类在共同环境中的密切互动而造成动物间传播的可能性。目前迫切需要加强对伴侣动物的监测研究,以更好地了解在宠物体内检测到人类 NoV 株系的影响,因为 NoV 有可能在全球家庭、动物医院或收容所中成为反向人畜共患病。
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引用次数: 0
The genetic composition of Anopheles mosquitoes and the diverse population of gut-microbiota within the Anopheles subpictus and Anopheles vagus mosquitoes in Tamil Nadu, India 印度泰米尔纳德邦按蚊的基因组成以及亚按蚊和按蚊肠道微生物群的多样性。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-10-29 DOI: 10.1016/j.actatropica.2024.107439
Sathishkumar Vinayagam , Kathirvel Sekar , Devianjana Rajendran , Karthikeyan Meenakshisundaram , Ashish Panigrahi , Dhanush Kumar Arumugam , Ipsita Pal Bhowmick , Kamaraj Sattu
In recent days, in tropical and subtropical regions, secondary vectors of Anopheles mosquitoes are becoming more important in transmitting diseases to humans as primary vectors. Various molecular techniques have separated closely related Anopheles subpictus and Anopheles vagus mosquitoes based on their diversity with other mosquito species. Despite their widespread distribution, the An. subpictus and An. vagus mosquitoes, which carry Plasmodium in their salivary glands, were not considered primary malaria vectors in India. An. vagus mosquitoes are zoophilic and physically similar to An. subpictus. We intend to identify An. subpictus and An. vagus mosquito's sister species based on their Interspaced Transcribed Region-2 (ITS2). We isolated the midgut gDNA from each mosquito and used ITS2-PCR and Sanger sequencing to characterize the mosquito species. BioEdit software aligned the sequences, and MEGA7 built a phylogenetic tree from them. According to this study, the information gathered from these mosquito samples fits the An. subpictus species A form and the An. vagus Indian form. Furthermore, gut microbiome plays an important role in providing nutrients, immunity, and food processing, whereas mosquitoes' midgut microbiota changes their hosts and spreads illnesses. So, we used the Illumina sequencer to look at the gut microbiome diversity of An. subpictus and An. vagus mosquitoes using 16S rRNA-based metagenomic sequencing. Both mosquito species had an abundant phylum of Pseudomonadota (Proteobacteria), Bacillota, Bacteroidota, and Actinomycetota in their gut microbiomes. Notably, both mosquito species had the genus Serratia in their gut. In the subpictus midgut, the genus of Haematosprillum bacteria was dominant, whereas in the vagus mosquito, the genus of Salmonella was dominant. Notably, current research has observed the Sodalis spp. Bacterial genus for the first time.
近来,在热带和亚热带地区,按蚊的次级传播媒介在向人类传播疾病方面正变得像一级传播媒介一样重要。各种分子技术根据亚按蚊(Anopheles subpictus)和按蚊(Anopheles vagus)与其他蚊子物种的多样性,将这两种密切相关的蚊子区分开来。尽管亚按蚊和迷走蚊分布广泛,但它们的唾液腺中携带疟原虫,在印度并不被认为是疟疾的主要传播媒介。迷走蚊具有嗜动物性,与亚疟蚊体形相似。我们打算根据它们的间距转录区-2(ITS2)来确定亚爪蝇蚊和迷走蚊的姊妹种。我们分离了每只蚊子的中肠 gDNA,并使用 ITS2-PCR 和 Sanger 测序来确定蚊子的种类。BioEdit 软件对序列进行了比对,MEGA7 据此构建了系统发生树。根据这项研究,从这些蚊子样本中收集到的信息符合亚型疟蚊(An. subpictus species A form)和印度型疟蚊(An. vagus Indian form)。此外,肠道微生物群在提供营养、免疫力和食物加工方面发挥着重要作用,而蚊子的中肠微生物群会改变宿主并传播疾病。因此,我们利用Illumina测序仪,使用基于16S rRNA的元基因组测序技术,研究了亚疟蚊和迷走蚊的肠道微生物组多样性。这两种蚊子的肠道微生物组中都有丰富的假单胞菌门(蛋白菌门)、芽孢杆菌门、类杆菌门和放线菌门。值得注意的是,两种蚊子的肠道中都有沙雷氏菌属。在亚目蚊子的中肠中,血吸虫属细菌占主导地位,而在迷走蚊子中,沙门氏菌属细菌占主导地位。值得注意的是,目前的研究首次观察到了索达利属细菌。
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引用次数: 0
Accuracy evaluation of diagnostic methods for visceral leishmaniasis in adult patients with and without HIV infection: Clinical management implications 对感染和未感染 HIV 的成年患者内脏利什曼病诊断方法的准确性评估:对临床管理的影响。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-10-29 DOI: 10.1016/j.actatropica.2024.107441
Angelita Fernandes Druzian , Adriana de Oliveira França , Minoru German Higa-Júnior , Maria Elizabeth Cavalheiros Dorval , Manoel Sebastião da Costa Lima-Junior , Mauricio Antonio Pompilio , Maria de Fatima Cepa Matos , Lídia Raquel de Carvalho , Rinaldo Poncio Mendes , Anamaria Mello Miranda Paniago
Visceral leishmaniasis (VL) poses a serious health threat, particularly when untreated, necessitating accurate diagnosis. While the gold-standard method involves identifying amastigotes in bone marrow aspirate (BMA), this procedure is invasive and occasionally contraindicated. Additionally, when VL is associated with HIV infection the serologies accuracies could be affected. This study aims to evaluate and compare diagnostic methods for VL in patients with and without HIV coinfection. We enrolled prospectively 127 consecutive adult VL patients, 48 (37.8%) of whom had HIV coinfection, in Brazil's Midwestern region, where VL is endemic. Parasitological examination served as the reference standard for accuracy analysis, with index tests including immunofluorescent antibody test (IFAT), immunochromatographic test with rK39 protein (rK39-ICT), and blood polymerase chain reaction (PCR). Specificity assessment involved 430 healthy blood donors from the same endemic area. Ninety-two patients had parasitologically confirmed VL. Among HIV-uninfected patients, rK39-ICT exhibited sensitivity comparable to PCR (93.6%; 95% CI: 83.6–100 vs. 97.8%; 95% CI: 93.6–99.2, respectively) and superior to IFAT (71.1%; 95% CI: 57.9–84.3). However, in HIV-infected patients, rK39-ICT sensitivity was notably lower than PCR (40.0%; 95% CI: 22.5–57.5 vs. 97.4%; 95% CI: 92.5–98.9) and similar to IFAT (67.5%; 95% CI: 52.9–82.0). Combining two serological tests in parallel identified 82.1% of parasitologically confirmed VL cases, with a negative likelihood ratio significantly lower than either test alone. No test achieved a specificity of 90%, and there were no significant differences in specificity observed among the index tests. The positivity rate of parasitological examination in the 127 VL patients was higher in HIV-infected compared to HIV-uninfected patients, 91.3% (95% CI: 83.2–99.4) versus 67.6% (95% CI: 56.9–78.3), respectively. These findings underscore the necessity of accounting for HIV infection when choosing VL diagnostic methods. Although rK39-ICT provides reliable results in HIV-uninfected patients, BMA examination remains crucial for accurate diagnosis in individuals with HIV/AIDS. In cases where bone marrow aspiration is contraindicated, employing IFAT and rK39-ICT in parallel could be considered, as the occurrence of both positive results is uncommon in healthy individuals from endemic areas.
内脏利什曼病(VL)对健康构成严重威胁,尤其是在未经治疗的情况下,因此必须进行准确诊断。虽然黄金标准方法是在骨髓抽吸物(BMA)中识别非主凝集体,但这一过程具有侵入性,有时会有禁忌。此外,当 VL 伴有 HIV 感染时,血清学的准确性也会受到影响。本研究旨在评估和比较合并和未合并 HIV 感染患者的 VL 诊断方法。我们在 VL 流行的巴西中西部地区连续招募了 127 名成年 VL 患者,其中 48 人(37.8%)合并有 HIV 感染。寄生虫学检查是准确性分析的参考标准,指标检测包括免疫荧光抗体检测(IFAT)、rK39 蛋白免疫层析检测(rK39-ICT)和血液聚合酶链反应(PCR)。特异性评估涉及来自同一流行地区的 430 名健康献血者。92 名患者经寄生虫学证实患有 VL。在未感染 HIV 的患者中,rK39-ICT 的灵敏度与 PCR 相当(分别为 93.6%;95% CI:83.6-100 与 97.8%;95% CI:93.6-99.2),优于 IFAT(71.1%;95% CI:57.9-84.3)。然而,在 HIV 感染者中,rK39-ICT 的灵敏度明显低于 PCR(40.0%;95% CI:22.5-57.5 vs. 97.4%;95% CI:92.5-98.9),与 IFAT 相似(67.5%;95% CI:52.9-82.0)。同时使用两种血清学检测方法可鉴定出 82.1% 的寄生虫学确诊 VL 病例,其阴性似然比明显低于单独使用任何一种检测方法。没有一种检测的特异性达到 90%,而且各指标检测的特异性没有明显差异。在 127 例 VL 患者中,HIV 感染者的寄生虫学检查阳性率高于 HIV 未感染者,分别为 91.3%(95% CI:83.2-99.4)和 67.6%(95% CI:56.9-78.3)。这些发现强调了在选择 VL 诊断方法时考虑 HIV 感染的必要性。尽管 rK39-ICT 可为未感染 HIV 的患者提供可靠的结果,但骨髓穿刺检查对于准确诊断 HIV 感染者/艾滋病患者仍然至关重要。在骨髓穿刺有禁忌的情况下,可以考虑同时采用 IFAT 和 rK39-ICT 方法,因为在流行地区的健康人中,同时出现这两种阳性结果的情况并不常见。
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引用次数: 0
Integrated all-atom and coarse-grained simulations uncover structural, dynamics and energetic shifts in SARS-CoV-2 JN.1 and BA.2.86 variants 全原子和粗粒度综合模拟揭示了 SARS-CoV-2 JN.1 和 BA.2.86 变体的结构、动力学和能量变化。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-10-28 DOI: 10.1016/j.actatropica.2024.107444
Akshit Sharma , Shweata Maurya , Timir Tripathi , Aditya K. Padhi
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), responsible for the COVID-19 pandemic, is an enveloped, positive-stranded RNA virus that enters human cells by using its spike protein to bind to the human angiotensin-converting enzyme 2 (ACE2) receptor. Since its emergence, the virus has mutated, producing variants with increased transmissibility, immune evasion, and infectivity. The JN.1 variant, detected in January 2024, features a single substitution mutation (Leu455Ser) in the receptor-binding domain (RBD) of its spike protein, setting it apart from its parent lineage, BA.2.86. This variant has rapidly become globally predominant due to its enhanced transmission and significant epidemiological impact. To understand the causes behind the dominance of the JN.1 variant, we conducted a comprehensive study using all-atom molecular dynamics (MD) and coarse-grained MD simulations. This allowed us to examine the structural, dynamic, energetics and binding properties of the wild-type (Wuhan strain), BA.2.86, and JN.1 variants. Principal component and free energy landscape analyses revealed enhanced structural stability in the JN.1 variant. Molecular Mechanics Poisson-Boltzmann Surface Area (MM/PBSA) assessments indicated lower binding affinity for JN.1 as compared to BA.2.86. Intermolecular interaction analyses further confirmed BA.2.86′s superior binding affinity over JN.1 and wild-type. Additionally, we compared and validated our findings against experimentally determined cryo-electron microscopy (cryo-EM) structures of JN.1 and BA.2.86 variants, confirming the reliability of our simulation results. Overall, this study provides crucial insights into the structural-dynamics-energetics features and physicochemical properties that have contributed to the global prevalence of the JN.1 variant and sheds light on its potential to generate future subvariants.
造成 COVID-19 大流行的严重急性呼吸系统综合症冠状病毒 2(SARS-CoV-2)是一种有包膜的正链 RNA 病毒,它利用其尖峰蛋白与人类血管紧张素转换酶 2(ACE2)受体结合,从而进入人体细胞。自出现以来,该病毒发生了变异,产生了传播性、免疫逃避性和感染性更强的变种。2024年1月检测到的JN.1变体,其尖峰蛋白的受体结合域(RBD)发生了单个置换突变(L455S),使其有别于母系BA.2.86。由于该变异体的传播性增强,对流行病学产生了重大影响,因此已迅速成为全球主要变异体。为了了解 JN.1 变异体占据主导地位的原因,我们利用全原子 MD 分子动力学(MD)和粗粒度 MD 模拟进行了一项全面的研究。这使我们能够研究野生型(武汉株)、BA.2.86 和 JN.1 变体的结构、动态、能量和结合特性。主成分和自由能景观分析表明,JN.1 变体的结构稳定性更强。分子力学泊松-波尔兹曼表面积(MM/PBSA)评估表明,与 BA.2.86 相比,JN.1 的结合亲和力较低。分子间相互作用分析进一步证实 BA.2.86 的结合亲和力优于 JN.1 和野生型。此外,我们还将我们的研究结果与实验测定的 JN.1 和 BA.2.86 变体的冷冻电镜(cryo-EM)结构进行了比较和验证,从而证实了我们模拟结果的可靠性。总之,这项研究为我们深入了解导致 JN.1 变体在全球流行的结构-动力学-能量学和物理化学特征提供了重要依据,并揭示了其产生未来亚变体的潜力。
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引用次数: 0
Cytokine levels in the severity of falciparum malaria: An umbrella review 细胞因子水平与恶性疟原虫疟疾严重程度的关系:综述。
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-10-28 DOI: 10.1016/j.actatropica.2024.107447
Cho Naing , Han Ni , Arun Kumar Basavaraj , Htar Htar Aung , Wong Siew Tung , Maxine A Whittaker
This study aimed to synthesise evidence comparing the levels of cytokines in severe falciparum malaria with those in uncomplicated malaria from available systematic reviews and meta- analyses. Relevant individual meta-analyses were searched in PubMed, Ovid, and Google Scholar, following the selection criteria specified for this umbrella review. The AMSTAR-2 tool was applied to grade the quality of the meta-analyses identified. The random-effects model was applied to recalculate the effect sizes of each included meta-analysis. Heterogeneity between meta-analyses was investigated with I2 value. 95% predicting interval (PI) for the summary random-effects model was also made. In each meta-analysis identified, information on largest study's effect, the excess significance test, small study effects, and publication bias were addressed. This umbrella review included nine meta-analyses (n = 12,674) for nine unique cytokines (IL-1β, IL-2, IL-4, IL-6, IL-8, IL-10, IL-12, IL-13, and TNF-α). Only one individual meta-analysis showed significantly higher levels of cytokine IL-1β (p: 0.009) amongst those with severe falciparum malaria compared to those with uncomplicated malaria. The 95% PIs did not show significance in any individual meta-analyses. Nine individual meta-analyses showed substantial heterogeneity, with I2 tests ranging from 81% to 99%. Two independent meta-analyses (the IL-4 and IL-12) showed evidence of ‘excess significant bias’. The meta-analysis of IL-1β only showed “Class III evidence”, indicating that this cytokine was “suggestive” in contributing to those with severity of malaria in comparison to those with uncomplicated malaria. The remaining eight cytokines showed “Class IV evidence,” indicating "weak" evidence on the impact of malaria severity.
In conclusion, the findings suggest that compared to uncomplicated malaria, pro-inflammatory cytokine IL-1β contributes to the development of severe falciparum malaria. Due to the limited level of evidence, further well-designed larger studies with multiple cytokines are needed to investigate cytokine levels as reliable biomarkers in malaria severity.
本研究旨在综合现有系统综述和荟萃分析中的证据,比较重症恶性疟原虫疟疾与无并发症疟疾的细胞因子水平。按照本综述规定的选择标准,在 PubMed、Ovid 和 Google Scholar 上搜索了相关的荟萃分析。采用 AMSTAR-2 工具对所确定的荟萃分析进行质量分级。随机效应模型用于重新计算每项纳入荟萃分析的效应大小。荟萃分析之间的异质性用 I2 值进行调查。此外,还对随机效应模型进行了 95% 预测区间 (PI)。在确定的每项荟萃分析中,都涉及了最大研究效应、过度显著性检验、小研究效应和发表偏倚等信息。本综述包括九项荟萃分析(n = 12,674),涉及九种独特的细胞因子(IL-1β、IL-2、IL-4、IL-6、IL-8、IL-10、IL-12、IL-13 和 TNF-α)。只有一项荟萃分析显示,与无并发症疟疾患者相比,重症恶性疟原虫疟疾患者的细胞因子 IL-1β 水平明显更高(P:0.009)。95%的PIs在任何一项荟萃分析中均未显示出显著性。九项单独的荟萃分析表明存在很大的异质性,I2 检验的范围在 81% 到 99% 之间。两项独立的荟萃分析(IL-4 和 IL-12)显示出 "过度显著偏倚 "的证据。对IL-1β的荟萃分析只显示了 "III级证据",表明该细胞因子与无并发症疟疾患者相比,对严重疟疾患者的影响是 "提示性的"。其余 8 种细胞因子显示出 "IV 级证据",表明其对疟疾严重程度的影响 "微弱"。总之,研究结果表明,与无并发症疟疾相比,促炎细胞因子 IL-1β 会导致重症恶性疟原虫疟疾的发生。由于证据水平有限,需要进一步开展设计良好的、使用多种细胞因子的大型研究,以调查细胞因子水平作为疟疾严重程度的可靠生物标志物的情况。
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引用次数: 0
Anti-toxoplasmic effects of celecoxib alone and combined with spiramycin in experimental mice 塞来昔布单独使用或与螺旋霉素联合使用对实验小鼠的抗肿瘤作用
IF 2.1 3区 医学 Q2 PARASITOLOGY Pub Date : 2024-10-28 DOI: 10.1016/j.actatropica.2024.107448
Sawsan S Shendi , Sahar M Selim , Soraya A Sharaf , Marwa A Gouda , Hebatallah M Sallam , Dina M Sweed , Dalia A Shafey
Even though toxoplasmosis is a worldwide parasitic disease caused by Toxoplasma gondii (T. gondii), the available drugs used for the treatment of symptomatic toxoplasmosis have multiple drawbacks. So, there is a considerable need to discover new potential therapeutic agents. The current study aimed to assess the effect of celecoxib (CELE) alone or combined with spiramycin against chronic toxoplasmosis in experimentally infected mice. The study documented the reduction rate of T. gondii cysts in brain tissues and ultrastructural changes through transmission electron microscopy after treatment. We also investigated pathological changes in the brain, liver, lung, and spleen, as well as the expression of TGF-β, iNOS, and pSTAT-1 in brain tissues. Other markers for kidney function and serum levels of interleukins 10 and 12 were also assessed. The study reported a reduction rate of T. gondii brain cyst count of 32.9 % after CELE treatment, 71.7 % after spiramycin treatment, and 75.7 % after combined treatment. Furthermore, the CELE and spiramycin combination improved the ultrastructure and histopathology in brain tissues while decreasing TGF-β, iNOS, and pSTAT-1 expression. The combined therapy ameliorated the inflammation of the liver, lung, and spleen, upregulated the IL-12 level, reduced the IL-10 level, and was accompanied by a reduction in creatinine and urea in serum. In conclusion, CELE increased spiramycin therapeutic efficacy, and their combination showed a better response than spiramycin alone. Thus, the CELE combination with spiramycin represents a hopeful therapy against chronic toxoplasmosis.
尽管弓形虫病是由弓形虫(T. gondii)引起的一种世界性寄生虫病,但用于治疗无症状弓形虫病的现有药物存在多种缺陷。因此,亟需发现新的潜在治疗药物。本研究旨在评估塞来昔布(CELE)单独或与螺旋霉素联合使用对实验感染小鼠慢性弓形虫病的影响。研究通过透射电子显微镜记录了治疗后脑组织中淋巴囊肿的减少率和超微结构的变化。我们还研究了脑部、肝脏、肺部和脾脏的病理变化,以及脑组织中 TGF-β、iNOS 和 pSTAT-1 的表达。此外,还评估了肾功能的其他指标以及白细胞介素 10 和 12 的血清水平。研究报告显示,CELE治疗后,淋球菌脑囊肿数量减少率为32.9%,螺旋霉素治疗后减少率为71.7%,联合治疗后减少率为75.7%。此外,CELE和螺旋霉素联合疗法改善了脑组织的超微结构和组织病理学,同时降低了TGF-β、iNOS和pSTAT-1的表达。联合疗法改善了肝、肺和脾的炎症,上调了 IL-12 水平,降低了 IL-10 水平,同时降低了血清中的肌酐和尿素。总之,CELE 增加了螺旋霉素的疗效,二者联合使用比单独使用螺旋霉素有更好的疗效。因此,CELE 与螺旋霉素的联合疗法是一种治疗慢性弓形虫病的希望疗法。
{"title":"Anti-toxoplasmic effects of celecoxib alone and combined with spiramycin in experimental mice","authors":"Sawsan S Shendi ,&nbsp;Sahar M Selim ,&nbsp;Soraya A Sharaf ,&nbsp;Marwa A Gouda ,&nbsp;Hebatallah M Sallam ,&nbsp;Dina M Sweed ,&nbsp;Dalia A Shafey","doi":"10.1016/j.actatropica.2024.107448","DOIUrl":"10.1016/j.actatropica.2024.107448","url":null,"abstract":"<div><div>Even though toxoplasmosis is a worldwide parasitic disease caused by <em>Toxoplasma gondii</em> (<em>T. gondii</em>), the available drugs used for the treatment of symptomatic toxoplasmosis have multiple drawbacks. So, there is a considerable need to discover new potential therapeutic agents. The current study aimed to assess the effect of celecoxib (CELE) alone or combined with spiramycin against chronic toxoplasmosis in experimentally infected mice. The study documented the reduction rate of <em>T. gondii</em> cysts in brain tissues and ultrastructural changes through transmission electron microscopy after treatment. We also investigated pathological changes in the brain, liver, lung, and spleen, as well as the expression of TGF-β, iNOS, and pSTAT-1 in brain tissues. Other markers for kidney function and serum levels of interleukins 10 and 12 were also assessed. The study reported a reduction rate of <em>T. gondii</em> brain cyst count of 32.9 % after CELE treatment, 71.7 % after spiramycin treatment, and 75.7 % after combined treatment. Furthermore, the CELE and spiramycin combination improved the ultrastructure and histopathology in brain tissues while decreasing TGF-β, iNOS, and pSTAT-1 expression. The combined therapy ameliorated the inflammation of the liver, lung, and spleen, upregulated the IL-12 level, reduced the IL-10 level, and was accompanied by a reduction in creatinine and urea in serum. In conclusion, CELE increased spiramycin therapeutic efficacy, and their combination showed a better response than spiramycin alone. Thus, the CELE combination with spiramycin represents a hopeful therapy against chronic toxoplasmosis.</div></div>","PeriodicalId":7240,"journal":{"name":"Acta tropica","volume":"260 ","pages":"Article 107448"},"PeriodicalIF":2.1,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142543000","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Acta tropica
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